BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75680.1
Length=2039
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926953 jgi|Araly1|926953|scaffold_202514.1 2556 0.0
Ahg472218 jgi|Araly1|472218|fgenesh2_kg.1__2172__AT1G19940.1 1009 0.0
> Ahg926953 jgi|Araly1|926953|scaffold_202514.1
Length=1621
Score = 2556 bits (1384), Expect = 0.0
Identities = 1528/1599 (96%), Gaps = 4/1599 (0%)
Strand=Plus/Plus
Query 282 CTC-TGGAATTCaaaaaaaTGGAGGAGAAATCCAAGTCAAGAGGTTGGTGCGGTTGGTTC 340
||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 4 CTCGTGGAATTC-GAAAAATGGGGGAGAAATCCAAGTCAAGAGGTTGGTGCGGTTGGTTT 62
Query 341 ATCGCCATTATTGTGCTAGCTTCTGTTATCCTCGCCGTCGTTTACACTGTTAAATTGAGA 400
||||| ||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 63 ATCGCGATTATTGTGCTTGCTTCTGTTGTCCTCGCCGTCGTTTACACCGTTAAATTGAGA 122
Query 401 ACGAAGAAATCCGGTGACGATGACGGTGGCGGTCCCGTTCCTGGACCTCCCGGCGCCATT 460
| ||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 123 ATGAAGAAACCCGGTGACGATGATGGTGGTGGTCCCGTTCCTGGACCTCCCGGCGCCATT 182
Query 461 GATAAGAAATACGCCGACGCTCTTAAGCTCGCTTTGCAGTTCTTCGATATCCAGAAATCT 520
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 183 GATAAGAAATACGCCGACGCTCTCAAGCTCGCTTTGCAGTTCTTCGATATCCAGAAATCT 242
Query 521 GGTAAATTGGAGAACAATAAGATACCTTGGAGAGGAGATTCAGGTCTTAAAGATGGAAGT 580
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 243 GGTAAATTGGAGAACAATAAGATATCTTGGAGAGGAGATTCAGGTCTTAAAGATGGAAGT 302
Query 581 GAAGATAATCTGGATCTTTCCAAAGGCTTATATGATGCTGGAGATCATATAAAGTTTGGT 640
|||| ||||| ||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 303 GAAGCCAATCTTGATCTTTCCAAGGGTTTATATGATGCTGGAGATCATATTAAGTTTGGT 362
Query 641 TTTCCAATGGCTTTCACTGCTACAGTTTTGTCATGGTCGATTCTTGAGTATGGTGATCAA 700
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 363 TTTCCAATGGCTTTCACTGCTACTGTTTTGTCATGGTCGATTCTTGAGTATGGTGATCAA 422
Query 701 ATGAATGCAGTGAACCAATTGGATCCTGCTAAAGACTCTCTCCGGTGGATCACTGACTAT 760
||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 423 ATGAATGTAGTGAACCAATTGGATCCTGCTAAAGACTCGCTCCGGTGGACCACTGACTAT 482
Query 761 CTTATCAAAGCTCATCCTTCTGACAATGTCCTCTATATCCAGGTGGGAGATCCAAAAGTA 820
||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 483 CTTATCAAAGCTCATCCTTCTGATAATGTCCTCTATATTCAGGTGGGAGATCCGAAAGTA 542
Query 821 GATCATCCATGCTGGGAGAGACCAGAGGATATGAAAGAGAAGAGACCACTTACTAAAATT 880
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 543 GATCATCCATGTTGGGAGAGACCAGAGGATATGAAAGAGAAGAGACCACTCACTAAAATT 602
Query 881 GATGTAGATACTCCAGGGACAGAGGTTGCTGCTGAAACTGCTGCAGCTATGGCTTCAGCG 940
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 603 GATGCAGATACTCCAGGGACAGAGGTTGCTGCGGAAACTGCTGCAGCTATGGCTTCAGCA 662
Query 941 TCTTTGGTGTTTAAGGATAGTGATCCTAC-ATATTCAGCAACGCTTCTGAAACATGCGAA 999
||||||||||||||||||||||||||| | ||||||||| ||||||||||| ||||||||
Sbjct 663 TCTTTGGTGTTTAAGGATAGTGATCCT-CAATATTCAGCCACGCTTCTGAAGCATGCGAA 721
Query 1000 GCAGTTGTTTAATTTTGCAGATACAAAGAGAGGCTCTTACAGTGTTAACATACCTGAGGT 1059
|||||||||| ||||||| || || |||||||||||||||||||| ||||||||||||||
Sbjct 722 GCAGTTGTTTGATTTTGCTGACACTAAGAGAGGCTCTTACAGTGTCAACATACCTGAGGT 781
Query 1060 TCAGAAGTTTTACAATTCGACTGGATATGGTGATGAGCTACTATGGGCAGCTAGTTGGTT 1119
|||||||||||||||||| || ||||| || |||||||||||||||||||||||||||||
Sbjct 782 TCAGAAGTTTTACAATTCAACGGGATACGGGGATGAGCTACTATGGGCAGCTAGTTGGTT 841
Query 1120 GTATCATGCAACAGAGGATAAAACTTACCTTGATTATGTGTCTAATCATGGAAAAGAATT 1179
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 842 GTATCATGCAACGGAGGACAAAACTTACCTTGATTATGTGTCTAATCATGGAAAAGAATT 901
Query 1180 TGCTAGTTTTGGAAATCCTACTTGGTTTAGTTGGGACAACAAGCTTGCAGGAACACAGGT 1239
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 902 TGCTAGTTTTGGAAATCCAACTTGGTTTAGTTGGGACAACAAGCTTGCAGGAACACAGGT 961
Query 1240 ACTATTATCAAGATTACTCTTCTTTAAGAAAGATTTATCAGGAAGCAAGGGACTTGGAAA 1299
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 962 ACTATTATCAAGATTACTCTTCTTTAAAAAAGATTTATCAGGAAGCAAGGGACTTGGAAA 1021
Query 1300 TTACAGGAACACAGCTAAAGCTGTCATGTGTGGACTTCTACCAAAGTCTCCAACATCTAC 1359
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1022 TTACAGGAACACAGCTAAAGCTGTCATGTGTGGACTTCTACCAAAGTCTCCAACAGCTAC 1081
Query 1360 AGCTAGTAGAACAAACGGTGGTCTTATATGGGTTAGTGAATGGAACTCGATGCAACAATC 1419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 AGCTAGTAGAACAAACGGTGGTCTTATATGGGTTAGTGAATGGAACTCGATGCAACAATC 1141
Query 1420 CGTTTCGTCAGCGTTTTTAGCCTCGCTTTTCAGTGATTACATGCTCACTTCCCGTATCCA 1479
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 CGTTTCCTCAGCGTTCTTAGCCTCGCTTTTCAGTGATTACATGCTCACTTCCCGTATCCA 1201
Query 1480 TAAAATATCTTGCGACGGGAAAATCTTCAAAGCAACAGAGCTTAGAGATTTCGCCAAATC 1539
||||||||| |||||||||||||| |||||||||||||| || || ||||||||||||||
Sbjct 1202 TAAAATATCATGCGACGGGAAAATTTTCAAAGCAACAGATCTCAGGGATTTCGCCAAATC 1261
Query 1540 GCAGGCTGATTACATGCTGGGGAAGAATCCGTTGGGAACGAGCTTCGTGGTGGGTTATGG 1599
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1262 GCAGGCTGATTACATGCTGGGGAAGAATCCGCTGGGAACAAGCTTCGTGGTGGGTTATGG 1321
Query 1600 AGACAAATACCCACAATTTGTGCATCATAGAGGAGCTTCGATCCCGGCAGATGCAACAAC 1659
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1322 AGACAAATACCCACAATTTGTGCATCATAGAGGAGCTTCGATTCCGGCAGATGCAACCAC 1381
Query 1660 GGGTTGCTTAGATGGATTCAAATGGTTTAACTCGACGAAACCAAACCCAAACATAGCATA 1719
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1382 GGGTTGCTTAGATGGATTCAAATGGTTTAACTCAACGAAACCAAACCCAAACATAGCATA 1441
Query 1720 TGGTGCACTCGTAGGTGGACCTTTCTTCAATGAGACGTTCACTGACTCACGAGAGAACCC 1779
|||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1442 TGGTGCACTCGTTGGTGGGCCTTTCTTCAACGAGACGTTTACTGACTCACGAGAGAACCC 1501
Query 1780 AATGCAGAACGAGCCAACCACTTACAACAATGCACTCCTCGTTGGTCTCTTGTCTAGTCT 1839
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1502 GATGCAGAACGAGCCAACCACTTACAACAATGCACTCCTCGTTGGTCTCTTGTCTAGTCT 1561
Query 1840 TGTCACTACATCTTCTACTTTACAGTCGTTGAAGTGAGC 1878
||||||||| |||||| ||||||| ||||||||||||||
Sbjct 1562 TGTCACTACCTCTTCTGCTTTACAATCGTTGAAGTGAGC 1600
> Ahg472218 jgi|Araly1|472218|fgenesh2_kg.1__2172__AT1G19940.1
Length=1602
Score = 1009 bits (546), Expect = 0.0
Identities = 1155/1442 (80%), Gaps = 70/1442 (5%)
Strand=Plus/Plus
Query 448 TCCCGGCGCCATTGATAAGAAA-TACGCCGACGCTCTTAAGCTCGCTTTGCAGTTCTTCG 506
||| ||| |||||||||| ||| ||||| | ||||| ||| ||||| |||| |||||||
Sbjct 126 TCCTGGCTCCATTGATAA-AAATTACGCTAATGCTCTCAAGATCGCTATGCAATTCTTCG 184
Query 507 ATATCCAGAAATCTGGTAAATTGGAGAACAATAAGATACCTTGGAGAGGAGATTCAGGTC 566
||||||||||||||||||| |||||||||| |||||| | |||||||||||||||||||
Sbjct 185 ATATCCAGAAATCTGGTAAGCTGGAGAACAACAAGATATCATGGAGAGGAGATTCAGGTC 244
Query 567 TTAAAGATGGAAGTGAAGATAA-TCTGGATCTTTCCAAAGGCTTATATGATGCTGGAGAT 625
||||||||||||| |||| || | | || ||||| ||||| ||||| ||||| |||||
Sbjct 245 TTAAAGATGGAAGCGAAGC-AAGTATCGACCTTTCGAAAGGTTTATACGATGCAGGAGAC 303
Query 626 CATATAAAGTTTGGTTTTCCAATGGCTTTCACTGCTACAGTTTTGTCATGGTCGATTCTT 685
|| || ||||||||||| ||||||||||||||||| |||||| | |||||||| ||||||
Sbjct 304 CACATGAAGTTTGGTTTCCCAATGGCTTTCACTGCCACAGTTCTCTCATGGTCTATTCTT 363
Query 686 GAGTATGGTGATCAAATGAATGCAGTGAACCAATTGGATCCTGCTAAAGACTCTCTCCGG 745
||||| |||||||||||| | | ||||||| |||||||| ||||||||||||||||
Sbjct 364 GAGTACGGTGATCAAATGGCTTCTGTGAACCTATTGGATCATGCTAAAGACTCTCTCAAA 423
Query 746 TGGA-TCACTGACTATCTT-ATCAAAGCTCATCCTTCTGACAA-TGTCCTCTATATCCAG 802
|||| | ||||| | || | ||||| |||||||||||| ||| |||||||||||| |||
Sbjct 424 TGGACT-ACTGATT-TCCTCATCAATGCTCATCCTTCTC-CAAATGTCCTCTATATTCAG 480
Query 803 GTGGGAGATCCAAAAGTA-G-ATCATCCATGCTGGGAGAGACCAGAGGATA-TGA-AAGA 858
||||||||||| | | | ||||| ||| ||||| || ||||| | | ||| |||
Sbjct 481 GTGGGAGATCCGGT-G-ACGGATCATAAATGTTGGGATAGGCCAGAA-ACAATGACAAG- 536
Query 859 GAAGAGACCACTTACTAAAATTGATGTAGATACTCCAGGGACAGAGGTTGCTGCTGAAAC 918
||||||| | |||||||| |||||| ||| ||||||||||| ||||||||||| || ||
Sbjct 537 GAAGAGAACTCTTACTAAGATTGATACAGAGACTCCAGGGACTGAGGTTGCTGCAGAGAC 596
Query 919 TGCTGCAGCTATGGCTTCAGCGTCTTTGGTGTTTAAGGATAGTGAT-CCTACATATTCA- 976
|| |||||||||||| |||| ||||| || || || || |||||| || | ||||||
Sbjct 597 AGCAGCAGCTATGGCTGCAGCATCTTTAGTATTCAAAGAAAGTGATACCAAG-TATTCAA 655
Query 977 GCAACGCTTCTGAAACATGCGAAGCAGTTGTTTAATTTTGCAGATACA-AAGAGAGGCTC 1035
||| |||||||||||||||| ||||||||||| ||||||| |||| | || | ||| ||
Sbjct 656 GCA-CGCTTCTGAAACATGCAAAGCAGTTGTTCGATTTTGCGGATA-ATAACAAAGGTTC 713
Query 1036 TTACAGTGTTAACATACCTGAGGTTCAGAAGTT-TTACAATTCGACTGGATATGGTGATG 1094
|||||||| ||| ||||| ||||||||| || ||| || || ||||||||||| ||||
Sbjct 714 TTACAGTGCTAATATACCCGAGGTTCAGCC-TTATTATAACTCAACTGGATATGGAGATG 772
Query 1095 AGCTACTATGGGCAGCTAGTTGGTTGTATCATGCAACAGAGGATAAAACTTACCTTGA-T 1153
|||| || ||||||||| |||||||| |||||||||||||||||||| || ||||| |
Sbjct 773 AGCTTCTTTGGGCAGCTTCATGGTTGTACCATGCAACAGAGGATAAAACATATCTTGACT 832
Query 1154 TATGTGTCT-AATCATGGAAAAGAATTTGCTAGTTTTGGAAATCC-TACTTGGTTTAGTT 1211
| |||||| || | || |||| |||| || |||||||| ||| | | ||||||||||
Sbjct 833 T-TGTGTCGGAAA-ACGGTGAAGAGTTTGGTAATTTTGGAAGTCCAT-CATGGTTTAGTT 889
Query 1212 GGGACAACAAGCTTGCAGGAACACAGGTACTATTATCAAGATTA-CTCTTCTTTAAGAAA 1270
|||||||||||||| |||||||||| ||||||||||||||||| | |||||| || |||
Sbjct 890 GGGACAACAAGCTTCCAGGAACACATATACTATTATCAAGATTAAC-CTTCTTCAAAAAA 948
Query 1271 GATTTATCAGGAAGC-AAGGGACTTGGAAA-TTACAG-GAACACAGCTA-AAGCTGTCAT 1326
| |||||||||||| |||| |||| || ||| | ||| ||||| | ||||||||||
Sbjct 949 GGGTTATCAGGAAGCCAAGG-ACTTC-AAGGTTATAAAGAA-ACAGC-AGAAGCTGTCAT 1004
Query 1327 GTGTGGACTTCTACCAAAG-TCTCCAACATCTACAGCTAGTAGAACAAACGGTGGTCTTA 1385
|||||| ||| |||||| | || |||||| ||||| |||||||||| | |||||||| |
Sbjct 1005 GTGTGGGCTTATACCAA-GCTCACCAACAGCTACATCTAGTAGAACTGATGGTGGTCTAA 1063
Query 1386 TATGGGTTAGTGAATGGAACT-CGA-TGCAACAATCC-GTTTCGTCAGCGTTTTTAGCCT 1442
||||||| ||||||||||| | | | ||||||| || || || || || |||||||| |
Sbjct 1064 TATGGGTAAGTGAATGGAA-TGC-ACTGCAACAC-CCTGTGTCCTCTGCATTTTTAGC-T 1119
Query 1443 -CGCTTTTCAGTGATTACATGCTCACTTCCCGTATCCATAAAATATCTTGCGACGGGAA- 1500
| || | |||||| || |||||||| || |||| | || |||||||| | | ||
Sbjct 1120 ACACTCTACAGTGACTATATGCTCACCTCTGGTATTAAGGAACTATCTTGC-A-GTGACC 1177
Query 1501 AATC-TTCAAAGCAACAGAGCTTAGAGATTTCGCCAAATCGCAGGCTGATTACATGCTGG 1559
|||| || ||| | |||| || ||| | ||||| | ||| ||||||||||||||| | |
Sbjct 1178 AATCCTTTAAACCTTCAGATCTCAGAAAATTCGCTAGATCTCAGGCTGATTACATGTTAG 1237
Query 1560 GGAAGAATCCGTTGGGAACGAGCTTCGT-GGTGGGTTATGGAGACAAATACCCACAATTT 1618
|||| |||||| | || ||| || | |||||| ||||| || ||||| ||| |||||
Sbjct 1238 GGAAAAATCCGGAGAAAATGAG-TTATTTGGTGGGATATGGTGAAAAATATCCAGAATTT 1296
Query 1619 GTGCATCATAGAGGAGCTTCGATCCCGGCAGATGCAA-CAACGGGTTGCTTAGATGGATT 1677
|||||||||||||||||||| || || || ||||||| || | || ||| |||||| ||
Sbjct 1297 GTGCATCATAGAGGAGCTTCAATACCAGCTGATGCAAACA-CAGGATGCAAAGATGGGTT 1355
Query 1678 CAAATGGTTTAACTCG-ACGAAACCAAACCCAAACATAGCATATGGTGCACTCGTAGGTG 1736
|| ||| |||||||| | ||| |||||||| ||| |||| ||||||||||| || ||||
Sbjct 1356 TAAGTGGCTTAACTCGGAGGAA-CCAAACCCGAACGTAGCTTATGGTGCACTTGTTGGTG 1414
Query 1737 GACC-TTTCTTCAATGAGACGTTCACT-GACTCACGAGAG-AACCCAATGCAGAACGAGC 1793
|||| ||| || || || ||||| | | ||| || | || || | ||||| || ||||
Sbjct 1415 GACCGTTT-TTGAACGACACGTTTA-TAGACGCAAG-GAACAATTCTATGCAAAATGAGC 1471
Query 1794 CAACCACTTACAACAATGCACTCCTCGTTGGTCTCTTGTCTAGTCTTG-TCACTACATCT 1852
||| |||||| |||| ||| || |||||||||| ||||| ||| ||| | ||||| |||
Sbjct 1472 CAAGCACTTATAACAGTGCTCTTGTCGTTGGTCTTTTGTCGAGT-TTGGTTACTACGTCT 1530
Query 1853 TC 1854
||
Sbjct 1531 TC 1532
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76675663185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5