BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75690.1
Length=743
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339747 jgi|Araly1|339747|fgenesh1_pg.C_scaffold_2001846 632 0.0
> Ahg339747 jgi|Araly1|339747|fgenesh1_pg.C_scaffold_2001846
Length=453
Score = 632 bits (342), Expect = 0.0
Identities = 429/468 (92%), Gaps = 18/468 (4%)
Strand=Plus/Plus
Query 116 ATGCCAGTTTCAGCTCCATCTCCGCCTCG---TCTTCATTCTCCGTTCATTCACTGTCCC 172
||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||
Sbjct 1 ATGCCAGTTTCAGCTCCATCTCCGCCTCGTCTTCTTCAATCTCCGTTCATTCACCGTCCA 60
Query 173 ATCAATTTCACTCCTTCTTCTTTCTCGGCGAGGAATCTCCGGTCGCCGTCAACATCTTAT 232
|||||||||||||| ||||| || || | || || || | | | | || ||||||
Sbjct 61 ATCAATTTCACTCCGTCTTC-TT-TC--C--GG--TCGCC-G--G-C-T--ACCTCTTAT 105
Query 233 CCCCGAATCAAAGCTGAACTCGATCCCAACACGGTAGTCGCGATATCTGTAGGCGTAGCA 292
||||||||||||||||||||||||||||||||||||||||| ||||| || || ||||||
Sbjct 106 CCCCGAATCAAAGCTGAACTCGATCCCAACACGGTAGTCGCAATATCAGTTGGTGTAGCA 165
Query 293 AGCGTCGCATTAGGAATCGGAATCCCTGTGTTCTACGAGACTCAAATCGACAATGCGGCT 352
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 166 AGCGTCGCATTAGGAATCGGAATCCCTGTGTTCTACGAGACACAAATCGAAAATGCCGCT 225
Query 353 AAGCGAGAGAATACTCAACCTTGTTTTCCCTGTAATGGCACCGGAGCTCAGAAATGCAGA 412
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 226 AAGCGAGAGAATACTCAACCTTGTTTTCCCTGTAACGGTACCGGAGCTCAGAAATGCAGA 285
Query 413 TTGTGTGTGGGAAGTGGTAATGTGACCGTAGAGCTTGGTGGAGGAGAGAAAGAAGTCTCA 472
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 286 TTGTGTGTGGGAAGTGGTAATGTGACCGTAGAGCTTGGTGGAGGAGAGAAACAAGTATCC 345
Query 473 AACTGTATCAACTGTGATGGTGCTGGTTCCTTAACTTGCACTACTTGTCAAGGCTCTGGT 532
||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 346 AACTGCATTAACTGTGATGGTGCTGGTTCCTTGACTTGCACTACTTGTCAAGGCTCTGGT 405
Query 533 GTTCAACCTCGATACCTTGATCGAAGGGAGTTCAAGGACGATGACTAA 580
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 GTTCAACCTCGATACCTTGATCGAAGGGAGTTCAAGGACGATGACTAA 453
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27372254406
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5