BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G75700.1

Length=594
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg339748 jgi|Araly1|339748|fgenesh1_pg.C_scaffold_2001847           782    0.0  


> Ahg339748 jgi|Araly1|339748|fgenesh1_pg.C_scaffold_2001847
Length=507

 Score =  782 bits (423),  Expect = 0.0
 Identities = 476/502 (95%), Gaps = 1/502 (0%)
 Strand=Plus/Plus

Query  94   ATGGTGTTTGGATATGCATATCCTGCTTATGAGTGCTTCAAAACGGTCGAACTCAACAAG  153
            |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  1    ATGGTGTTTGGATACGCATATCCTGCTTATGAGTGTTTCAAAACGGTCGAACTCAACAAG  60

Query  154  CCTGAAATTCAACAACTTCAGTTCTGGTGCCAGTATTGGATTATTGTAGCTGCTTTGACG  213
            ||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  61   CCTGAGATTCAACAGCTTCAGTTCTGGTGTCAGTATTGGATTATTGTAGCTGCTTTGACG  120

Query  214  ATTTTCGAAAGAATTGGTGATGCTCTTGTTTCTTGGTTACCAATGTATAGCGAGGCGAAG  273
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  121  ATTTTCGAAAGAATTGGTGATGCTCTTGTTTCTTGGCTACCAATGTATAGCGAGGCGAAG  180

Query  274  TTGGCTTTCTTCATTTATCTCTGGTTTCCAAAGACTAAAGGAACAACATACGTTTACGAT  333
            ||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct  181  TTGGCATTCTTCATTTATCTCTGGTTTCCAAAGACTAAAGGAACTACATGCGTTTACGAT  240

Query  334  TCTTTCTTCAGGCCATATATAGCAAAGCATGAAAATGAAATTGACCGCAACTTGGTGAAG  393
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  241  TCTTTCTTCAGGCCATATATAGCAAAGCATGAAAATGAAATTGACCGCAACTTGATGAAG  300

Query  394  GTAAAGACTAGAGCTAAGGATATGGCAATGATATATCTCCAAAAAGCAATCAACCAAGGG  453
            |||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||| 
Sbjct  301  GTAAGGACTAGAGCTAGGGATATGGCAATGATATATCTTCAAAAAGCAATCAACCAAGGA  360

Query  454  CAGACCAAATTCTTTGAGATCTTACAGTATATCACAGAACAATCAACACCAAAATCTAAG  513
            ||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct  361  CAGACCAAATTCTTTGAGATCTTGCAGTATATTACAGAACACTCAACACCAAAATCTAAG  420

Query  514  GCTGAGGAAAAGAAAGAGACAACAATACCTAAACTCGATGATCCAATTCTTAAGGTGAAA  573
             ||||||||||||||||||||||   ||||||||| | ||||||||||| ||||||||||
Sbjct  421  TCTGAGGAAAAGAAAGAGACAACTCCACCTAAACTTGTTGATCCAATTCCTAAGGTGAAA  480

Query  574  GAAAACGAAGTCACTAAA-TGA  594
            ||||| |||||||||||| |||
Sbjct  481  GAAAATGAAGTCACTAAAATGA  502



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21748685730


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5