BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75710.1
Length=1610
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476719 jgi|Araly1|476719|fgenesh2_kg.2__1849__AT1G75710.1 2357 0.0
Ahg913807 jgi|Araly1|913807|Al_scaffold_0001_4061 327 1e-88
> Ahg476719 jgi|Araly1|476719|fgenesh2_kg.2__1849__AT1G75710.1
Length=1603
Score = 2357 bits (1276), Expect = 0.0
Identities = 1522/1632 (93%), Gaps = 52/1632 (3%)
Strand=Plus/Plus
Query 1 TTCGATTTCAACACCTAAAAATAAAAGCTTATAATTAAAGAACCATAAAGACGAACACAA 60
|||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1 TTCGATTTCAACACCT--AAA-AAAAGCTTATAATTAAAGAACCATAAAGAAGAACACAA 57
Query 61 AAGAAACTCTCACA-T-TC---TCAAGAGTTTCTTTCTTCTTTCAATGGCTTTACTAACT 115
|||||||||||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct 58 AAGAAACTCTCACATTCTCAAGTCAAGAGTTTCTTTCTTCTTTCAATGGCTTTACTAACT 117
Query 116 TTCTTGCCGGAGAACGCAGAGGCGCCACAAAAACACAAGCCAACGTCTAGCAAACGAAAG 175
||||||||||| |||||||||||||| ||||||||||||||| |||| |||||||| |||
Sbjct 118 TTCTTGCCGGAAAACGCAGAGGCGCCTCAAAAACACAAGCCACCGTCGAGCAAACGCAAG 177
Query 176 AAACGCGATAATCCCACCGACCAAACGCA------GACACAGAAA-CATA-AA-CCGCAG 226
|||||||| |||||||||||||||||||| || ||||||| || | || ||||||
Sbjct 178 AAACGCGAGAATCCCACCGACCAAACGCAGCCGCGGAAACAGAAACCACACAAGCCGCAG 237
Query 227 AAACCGAAGAAAGCAGTACCTCCGAAGCAGCCATCTTCATGGGACCAAATCAAGAACCTA 286
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 238 AAACCGAAGAAAGAAGTACCTCAGAAGCAGCCATCTTCATGGGACCAAATCAAGAACCTA 297
Query 287 TTGACTTGCAAACAAATCGAAGGGTCAAGAGTCCATGATCCTTCCAAGAACTCTCAAT-C 345
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 298 TTGACTTGCAAACAAATTGAAGGGTCAAGAGTCCATGATCCTTCCAAGAACTCTC-ATGT 356
Query 346 TGGTCCGTCCATGACAACTAACTTATCTCCTTCCAAGCTTGGCTCGTCGTGCAGCTCCAT 405
||||||||||||||| ||| | ||||||||||| ||||| ||||||||||||||||||||
Sbjct 357 TGGTCCGTCCATGACCACTCATTTATCTCCTTCAAAGCTCGGCTCGTCGTGCAGCTCCAT 416
Query 406 TTGCAGCTTTAGAGACGTGGCTCACGGCAACACTCGTGTGGTTCATAGAGCTGATCACTC 465
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 417 ATGCAGCTTCAGAGACGTGGCTCACGGCAATACTCGTGTGGTTCATAGAGCTGATCACTC 476
Query 466 ACCAGACGTAGGTAACTCGGCTACTCCTAACTCGGAGACTCGGCTTCTGACTCGGAAACC 525
|||||||||| |||||| | | |||||||||||||||||||||||||||||||||||||
Sbjct 477 TCCAGACGTAGCTAACTCAGTTGCTCCTAACTCGGAGACTCGGCTTCTGACTCGGAAACC 536
Query 526 TGGTCAACACGGTTCTTCTTCGTCTCGGTCTCTTACATCTGGCTCAACGAGATCTAACGC 585
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TGGTCAACACGGATCTTCTTCGTCTCGGTCTCTTACATCTGGCTCAACGAGATCTAACGC 596
Query 586 CAGTGGGAGTTACACGTCATCGTCAACGACTTCGTTTAGAGCCATGCAGTTCCGTAAACT 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CAGTGGGAGTTACACGTCATCGTCAACGACTTCGTTTAGAGCCATGCAGTTCCGTAAACT 656
Query 646 CTCCGGATGTTACGAATGTCACATGATCGTTGACCCGAGCAGGTATCCGATTTCGCCTAG 705
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 657 CTCCGGATGTTACGAATGTCACATGATCGTTGACCCTAGCAGGTATCCGATTTCGCCTAG 716
Query 706 GGTTTGTGCTTGTTCCCAATGTGGAGAAGTTTTCCCCAAGCTTGAAAGCTTAGAGCTTCA 765
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 717 GGTTTGTGCTTGTTCCCAATGTGGAGAAGTTTTTCCCAAGCTTGAAAGCTTAGAGCTTCA 776
Query 766 TCAAGCAGTTCGTCACGCAGTTTCGGAGTTAGGTCCGGAGGATTCGGGTCGAAACATAGT 825
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 777 TCAAGCAGTTCGTCACGCAGTTTCGGAGTTAGGTCCGGAAGATTCGGGTCGAAACATAGT 836
Query 826 GGAGATCATATTCAAATCAAGCTGGCTTAAAAAAGACAGTCCCATCTGTCAGATCGAACG 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GGAGATCATATTCAAATCAAGCTGGCTTAAAAAAGACAGTCCCATCTGTCAGATCGAACG 896
Query 886 GATATTAAAAGTCCACAACACTCAACGTACGATCCAACGGTTTGAGGATTGCCGAGACGC 945
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GATATTAAAAGTCCAAAACACTCAACGTACGATCCAACGGTTTGAGGATTGCCGAGACGC 956
Query 946 AGTGAAGGCGCGTGCACTTCAAGCAACCAGAAAAGATGCTCGTTGTGCCGCCGACGGCAA 1005
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 957 AGTGAAGGCGCGTGCACTTCAAGCAACCAGAAAAGACGCTCGTTGTGCCGCCGACGGCAA 1016
Query 1006 CGAGCT-CTTACGTTTTCACTGCACCACTCTCACTTGTTCACTCGGAGCTCGTGGCTCTT 1064
|||||| || |||||| |||||||||||| | |||||||| |||||||||||||||||||
Sbjct 1017 CGAGCTTCT-ACGTTTCCACTGCACCACTTTAACTTGTTCTCTCGGAGCTCGTGGCTCTT 1075
Query 1065 CTTCTCTCTGCTCTAACCTCCCTGTTTGTGGCGTCTGCACCGTGATTCGCCACGGTTTCC 1124
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||
Sbjct 1076 CTTCTCTCTGCTCTAACCTCCCTGGTTGTGGCGTCTGCACTGTGATTCGCCACGGATTCC 1135
Query 1125 AAGGAAAATCTGGTGGCGGAGGAGCCAAC-GT--C-GCAAACGCCGGTG---TGAGGACG 1177
||||||||||||| ||||||||||||| | | | || |||| ||||| ||||||||
Sbjct 1136 AAGGAAAATCTGGCGGCGGAGGAGCCA-CTGCAACCGCTAACGGCGGTGGCGTGAGGACG 1194
Query 1178 ACGGCGAGCAGCGGAAGAGCTGATGATTTGCTGAGGTGTAGCGATGATGCGAGGAGAGTG 1237
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1195 ACGGCGAGTAGCGGAAGAGCTGATGATTTGCTGAAGTGTAGCGATGATGCGAGGAGAGTG 1254
Query 1238 ATGCTTGTGTGCCGTGTGATCGCTGGGAGAGTTAAGCGAGTTGATTTACCGGCGGCGGAT 1297
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1255 ATGCTTGTGTGCCGTGTGATCGCTGGGAGAGTTAAACGCGTTGATTTACCGGCGGCGGAG 1314
Query 1298 GCTTCGGCTACAGCGGAGAAGAAGTCAACGGTGGAGGATAACTCGGTGGTTGGAGTTTCT 1357
||| || | | || |||||||||||||||||| |||||| ||||||
Sbjct 1315 GCTCCG--T-C-------------TC--CGGTGGAGGATAACTCGGCGGTTGGCGTTTCT 1356
Query 1358 TCGAGTGGTGGTACGTTTGACTCGGTGGCGGTCAATGCTGGAGTTTATTCGAATCTTGAG 1417
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1357 ACGAGTGGGGGTACGTTTGACTCGGTGGCGGTCAACGCTGGAGTTTATTCGAATCTTGAG 1416
Query 1418 GAGCTTGTGGTTTATAACCCGAGAGCTATATTACCTTGCTTCGTGGTTATTTACAAAGTT 1477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1417 GAGCTTGTGGTTTATAACCCGAGAGCTATATTACCTTGCTTCGTGGTTATTTACAAAGTT 1476
Query 1478 TTAGAATCTTGAATTTGTAATTTTAACTTGAGAAATAATGTTTGTTTTTTGTACTTCTAA 1537
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1477 TTAGAATCTTGAATTTGTAATTTTAACTTGAGAAATAATGTTTGTTTTTAGTACTTCTAA 1536
Query 1538 CTTTTTAATATTATAGGGAGAGATTAGGGATAATCATCAACCTGCATCATAATTCCCATC 1597
||||||||||| |||| ||| ||||| |||||||||||||||||||||| |||||||
Sbjct 1537 CTTTTTAATATGATAG--AGA--TTAGGT-TAATCATCAACCTGCATCATAAATCCCATC 1591
Query 1598 TTATTATTGACT 1609
||||||||||||
Sbjct 1592 TTATTATTGACT 1603
> Ahg913807 jgi|Araly1|913807|Al_scaffold_0001_4061
Length=1269
Score = 327 bits (177), Expect = 1e-88
Identities = 339/416 (81%), Gaps = 16/416 (4%)
Strand=Plus/Plus
Query 625 AGCCATGCAGTTCCGTAAA-CTCTCCGGATGTTACGAATGTCACATGATCGTTGACCCGA 683
||| ||||| ||| | ||| ||||| || || || || || |||||||| ||||| || |
Sbjct 453 AGCTATGCACTTCAG-AAACCTCTCAGGTTGCTATGAGTGCCACATGATTGTTGATCCAA 511
Query 684 GCAGGTATCCGATTTCGCCTAGGGTTTGTGCTTGTTCC-CAATGTGGAGAAGTTTTCCCC 742
|||| ||||| || | || || | ||||| || ||| || ||||| || ||||||||
Sbjct 512 GCAGATATCCAATAGCACCAAGAATATGTGCATG-TCCACAGTGTGGGGAGGTTTTCCCT 570
Query 743 AAGCTTGAAAGC-TTAGAGCTTCATCAAGCAGTTCGTCACGCAGTTTCGGAGTTAGGTCC 801
|||||||||| | || || ||||||||||||||||||||||| || || |||||||| ||
Sbjct 571 AAGCTTGAAA-CTTTGGAACTTCATCAAGCAGTTCGTCACGCTGTGTCAGAGTTAGGGCC 629
Query 802 GGAGGATTC-GGGTCGAAACATAGTGGAGATCATATTCAAATCAAGCTGGCTTA-AAAAA 859
|||||||| ||| ||||||||||||| ||||| |||||||| |||||| ||| |||
Sbjct 630 AGAGGATTCAGGG-AGAAACATAGTGGACATCATCTTCAAATCTAGCTGG-TTACGTAAA 687
Query 860 GACAGTCCCATCTGTCAGATCGAACGGATATTAAAAGTCCACAACACTCAACGTACGATC 919
||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 688 GACAGTCCCATCTATAAGATCGAACGGATATTAAAAGTCCACAACACTCAACGCACGATC 747
Query 920 CAACGGTTTGAGGATTGCCGAGACGCAGTGAAGGCGCGTGCACTT-CAAGCAACCAGAAA 978
|||||||| || ||||| || |||||||| || | | ||||| | | || |||||||
Sbjct 748 CAACGGTTCGAAGATTGTCGTGACGCAGTCAAATCCCATGCACATGCCTCCA-CCAGAAA 806
Query 979 AGATGCT-CGTTGTGCCGCCGACGGCAACGAGCT-CTTACGTTTTCACTGCACCAC 1032
||| || || | ||||||||||||||||||||| ||| | || |||||||||||
Sbjct 807 AGA-GCCACGATCTGCCGCCGACGGCAACGAGCTTCTTT-GCTTCCACTGCACCAC 860
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60334948080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5