BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G75717.1

Length=343
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg926957 jgi|Araly1|926957|scaffold_202518.1                        350    5e-96


> Ahg926957 jgi|Araly1|926957|scaffold_202518.1
Length=327

 Score =  350 bits (189),  Expect = 5e-96
 Identities = 256/288 (89%), Gaps = 5/288 (2%)
 Strand=Plus/Plus

Query  57   TCATGAAGCTCTTCCACAAATTAGGAAAGATCCTCATGAGGCTCATTGATTTCACTCTTC  116
            |||||||||||||||||  |||| |||||||  |||||||||| || ||| ||||||| |
Sbjct  24   TCATGAAGCTCTTCCACGGATTACGAAAGATTTTCATGAGGCTTATCGATCTCACTCTCC  83

Query  117  ATTCCTCCTCTCGCCGGCAGAAGAAGAACAACTCCCGCTCCGGCGATGGAGAAAGGTTTG  176
             ||||||||| ||| ||||||||||   |   | |||| ||  ||| | ||| |||| ||
Sbjct  84   CTTCCTCCTCCCGCAGGCAGAAGAATTTC--GT-CCGCACCAACGACGAAGAGAGGTATG  140

Query  177  AGCCGCCGAAGATTTCGTGTAGTAGTTCGTACTATTCGTCTCACGTACACTACAGTGAAG  236
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  141  AGCCGCCGAAGATTTCGTGTAGTAGTTCGTACTATTCGTCTCACGTACACTACAGTGAAG  200

Query  237  CTATCGCAGATTGCATAGAGTTTTTCAACAAGTCTTCTGCTATGTCTTGTGAAGATCATG  296
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  201  CTATCGCAGATTGCATAGAGTTCTTCAACAAGTCTTCTGCTATGTCTTGTGAAGATCATG  260

Query  297  AAGCTCGCCTTGTTAACAAT-ATCGATCGTGACTGTTATTACGTTTAG  343
            |||||||||||||| || || | |||||||||||||| ||||||||||
Sbjct  261  AAGCTCGCCTTGTTCACGATCA-CGATCGTGACTGTTTTTACGTTTAG  307



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12171632891


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5