BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G75720.1

Length=594
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg316499 jgi|Araly1|316499|fgenesh1_pm.C_scaffold_2001532           867    0.0  


> Ahg316499 jgi|Araly1|316499|fgenesh1_pm.C_scaffold_2001532
Length=609

 Score =  867 bits (469),  Expect = 0.0
 Identities = 565/609 (93%), Gaps = 15/609 (2%)
 Strand=Plus/Plus

Query  1    ATGGAGACAACGAAGAGAGCAGAGATCGACACAACGGCACCGTTTAGAACCGTCAAAGAA  60
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGAGACGACGAAGAGAGCAGAGATCGACACAACGGCACCGTTTAGAACCGTCAAAGAA  60

Query  61   GCCGTTGCTTTGTTCGGCGAGAGAGTCTTAGCCAGTCAAGTCTACTCGAACCATCTCAAA  120
            |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct  61   GCCGTTGCGTTGTTCGGCGAGAGAGTCTTAGCCAGTCAAGTCTACTCGAACCATCTTAAG  120

Query  121  GTGGCAATGAAGATACAGATGCATGATGAGAAATGGGAAGATCCATCAGGGATTAAGATA  180
            ||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||| |
Sbjct  121  GTGGCAATGAAGAAACAGATGCAGGATGAGAAATGGGAAGATCCATCAGGGATTGAGAGA  180

Query  181  GAGCTTCAAGAGACAAGATATGATCTCAAAAGGGCAAAAGAAGAAAGCATACAAATGAGG  240
            |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| 
Sbjct  181  GAGCTTGAAGAGACAAGACATGATCTCAAAAGGGCAAAAGAAGAAAGCATACAAATGAGA  240

Query  241  AACTCTTTGTCTTGTCTCAAGGAAGAGCTTGAACGAACAAAACAAGAGCTCCAGAAGCTG  300
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  241  AACTCTTTGTCTTGTCTCAAGGAAGAGCTTGAACGAACTAAACAAGAGCTCCAGAAGCTG  300

Query  301  AGAGTTGATCCTGGGGTAAACGAAACGAAACTCGACGAGACTGTTTTTAAAACCAAGTTT  360
            |||||||||||||| |||  ||||||||||||||||||||||||||| ||||||||||| 
Sbjct  301  AGAGTTGATCCTGGTGTACCCGAAACGAAACTCGACGAGACTGTTTTCAAAACCAAGTTC  360

Query  361  GAAGTGTTAGTTCCTCGGGTTGATGATGAGCCAATTAGAAGTCCGAGGTTGAGATCGATG  420
            ||||||||||||||||||| ||| ||||| |||||||||||||| |||||||||||||||
Sbjct  361  GAAGTGTTAGTTCCTCGGGATGACGATGAACCAATTAGAAGTCCAAGGTTGAGATCGATG  420

Query  421  AGTGAGAAGAGATACGTGAAATTTGCAAACCCTACTGGTAATAATGGCTC-G-G-TG---  474
            ||||| ||||||||||||||||||||||||||||||||||||||||| || | | ||   
Sbjct  421  AGTGAAAAGAGATACGTGAAATTTGCAAACCCTACTGGTAATAATGGTTCCGCGGTGGAG  480

Query  475  -T-TT-CTTGAGAGACATCCTTCAATgaaaaagaaggagaagaagacaaaggataa---g  528
             | || ||||||||||||||||| ||||||| ||||||||||||||| ||| ||||   |
Sbjct  481  ATGTTTCTTGAGAGACATCCTTCGATGAAAATGAAGGAGAAGAAGACCAAGAATAATAAG  540

Query  529  aagaagaaga-G--TTTAATCCCTTTGTTTATTGGAGGGATTTTTTCTAAGAAAAAGGTT  585
            |||||||||| |  ||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct  541  AAGAAGAAGAAGAGTTTGATCCCTTTGTTTATTGGAGGGATTTTTTCAAAGAAAAAGGTT  600

Query  586  TTGCAATGA  594
            |||||||||
Sbjct  601  TTGCAATGA  609



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21748685730


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5