BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75730.1
Length=2739
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476721 jgi|Araly1|476721|fgenesh2_kg.2__1851__AT1G75730.1 2724 0.0
> Ahg476721 jgi|Araly1|476721|fgenesh2_kg.2__1851__AT1G75730.1
Length=2528
Score = 2724 bits (1475), Expect = 0.0
Identities = 1904/2096 (91%), Gaps = 90/2096 (4%)
Strand=Plus/Plus
Query 646 CTTCTTCACCTCT-TGCTTGAGTGGTGAGaaaaaaaGAAGATGGAAATGGGTCGTCGAGA 704
||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 499 CTTCTTCACCTCTAT-CTTGAGTGGTGAGATAAAAAGAAGATGGAAATGGGTCGTCGAGA 557
Query 705 TTTGATGAGACGTGGAACAACCAATCGATTTTCCAATAAACAACAATCTGGATCTGGGTT 764
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 TTTGATGAGACGTGGATCAACCAATCGATTTTCCAATAAACAACAATCTGGATCTGGGTT 617
Query 765 TTCTACAAAATCTAAGAAAGGAATGCTGAAGAAACTTG-GTTTTGCTGATGAGAAACTGA 823
||||||||| ||||||||||||||||||||||||| || |||| ||||||||||||||||
Sbjct 618 TTCTACAAAGTCTAAGAAAGGAATGCTGAAGAAAC-TGCGTTTAGCTGATGAGAAACTGA 676
Query 824 AACAAGAGATGAG---CTACGATACTCTTCCTTCTCCAGATTTAGAAAACGAGGTTTCTA 880
||||||| ||||| |||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 677 AACAAGAAATGAGCTACTACGAGACTCTTCCTTGTCCAGATTTAGAAAACGAGGTTTCTA 736
Query 881 AGAAGAAATCTAAGCTTCCAAAAAAGAATTTGAAAGACACTAATGGTGTGGATCATGCCT 940
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 AGAAGAAATCCAAACTTCCAAAAAAGAATTTGAAAGACACTAATGGTGTGGATCATGCCT 796
Query 941 CTGTACCACGGAAGCTTCGTTCAG-C-----CATGAAGAAGCGGAATCTTGAATCTGTTT 994
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 797 CTGTACCACGGAAGCTTCGTTCAGCCATGATCATGAAGAAGCGGAATCTTGAATCTGTTT 856
Query 995 CTAAGCTATCCTCTGTTTCAAAGAGACTTAACCGGTTTAAAACC-GGAACTGAATCTTCG 1053
|||||||||||||||||||||||||||||||||||| |||||| ||| | ||||| ||
Sbjct 857 CTAAGCTATCCTCTGTTTCAAAGAGACTTAACCGGTCCAAAACCGGGATC-GAATC-TC- 913
Query 1054 GTTAAGAAGGAGAGTCAAGAAATGGAAGCAAAAGCTATCGTTACTGAGTCGATGATGATT 1113
||||||| | || |||||||||||||||||||||||| ||| ||||||||||||| |||
Sbjct 914 -TTAAGAA-G-GA-TCAAGAAATGGAAGCAAAAGCTATTGTTCCTGAGTCGATGATAATT 969
Query 1114 TCGAAAGATGAGAAAGAAGTTGCAGAGACTTTATATGGTTTAGCTGGAATGTTTACTGAG 1173
|| |||||||||||||||||||||||||||||||| ||||||||||||||| || |
Sbjct 970 TCTAAAGATGAGAAAGAAGTTGCAGAGACTTTATACGGTTTAGCTGGAATG-TT--T--- 1023
Query 1174 ACTGACTCTCTTGGTAAGAAGACTAGTAATGAGAAAGAAACCAGCAAAGTTGTTGACTCA 1233
||||| |||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1024 ACTGA---------TAAGAAGACTTGTAATGAGAAAGAAACCAGCAAA---GTTGACTCG 1071
Query 1234 ATTTTGGTTGTGGAAGATGACTATACAAAAACCGAATCGCTTACACCGG-TGGTTTCAGT 1292
|||||||||||||||||||||||||||||| |||||||||||| ||||| | || || ||
Sbjct 1072 ATTTTGGTTGTGGAAGATGACTATACAAAAGCCGAATCGCTTATACCGGAT-GTGTCTGT 1130
Query 1293 TCTCTCTTCAGCCAAAACTAAGCAGATTGATGCAATGCCATTAGAGCAATCTGATAAACA 1352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 TCTCTCTTCAGCCAAAACTAAGCAGATTGATGCAATGCCATTAGAGCAATCTGATAAACA 1190
Query 1353 GTTCAACACAACAGGAATGGTTGATTTCATTGATAGATTGAAGCAAAGCAGCTCAGTGAA 1412
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 GTTCAGCACAACAGGTATGGTTGATTTCATTGATAGATTGAAGCAAAGCAGCTCAGTGAA 1250
Query 1413 AGTGACTGATGCACATGCAAGAGTCAATGAAACAAAGGTTACAACAAGCAACGGTCTTGC 1472
|||| |||||||| |||||| |||||||| ||||||||| ||||||| ||||||
Sbjct 1251 TGTGAATGATGCACCTGCAAGGGTCAATGACACAAAGGTTGCAACAAG------TCTTGC 1304
Query 1473 TCTGTGGCCTGGCCTTTCTTCAACAACTGTTCATTCAGGAGCTCAAGTTCTTTCAAAGCC 1532
||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1305 GCTGTGGCCTGGTCTATCTTCAACAACTGTTCATTCAGGAGCTCAAGTTCTTTCAAAGTC 1364
Query 1533 ATCTTCAACAAAGCTTCCACCGTGGATGGGTCAAGCTGTTTCTCCTTCCAATACTGCTTC 1592
|||||| ||||||||||| || ||||||||||||||||||||||||||||||| ||||||
Sbjct 1365 ATCTTCGACAAAGCTTCCTCCTTGGATGGGTCAAGCTGTTTCTCCTTCCAATAGTGCTTC 1424
Query 1593 ACTCTTGAACTGTGAACCATTAAGAGTCCAGCCGAGAAAGTTGAAGAGATGTGCCTCTCA 1652
|||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1425 ACTCTTGA---GTGAACCATTAAGAGCCCAGCAGAGAAAGTTGAAGAGATGTGCCTCTCA 1481
Query 1653 TATATACATTTCCCGTCTCATTAAAGTATTACAGACCAGTAAGAGTAGTCTCGCAACACT 1712
|| |||||||||||||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 1482 CATTTACATTTCCCGTCTCATTAAAGTATTACAGACCAGTAAGAGTAGTCCCACGACACT 1541
Query 1713 TAACCAAAACGAGCAAAGATATTCAGAAATGTCAGAACGCAGACTCCCTGATTCAGTGAT 1772
|||||||||||||||||||| || |||||||||||||| || |||||||||||||||||
Sbjct 1542 TAACCAAAACGAGCAAAGATCTTTTGAAATGTCAGAACGTAGGCTCCCTGATTCAGTGAT 1601
Query 1773 AACCATTAATGACTTTAAAGCAATAGTTTCTCCACCTAAGAGGTATCAAAACCCGCATCT 1832
||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||
Sbjct 1602 AACCATTAATGACTTTAAAACAATGGTTTCTCCAGCTAAGAGGTATCAAAACCCGCATCT 1661
Query 1833 GCTCGATATGCACCGGGCACATAACCCAAAACCCGTGCAAGAAGACATGACTAAGCTTGC 1892
||||||||| ||| || | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1662 GCTCGATATACACAGGACGCATAACCCAAAACCCGTGCAAGAAGACATGACTAAGCTTGC 1721
Query 1893 TCTCGAGCTCTATGGTCCACACACTTCACAGAAACAAAGCTTTGATTTCCTAAGTCTCTC 1952
|||||| ||||| ||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1722 TCTCGAACTCTACGGTCCGCACACTTCACAGAAACAGAGCTTCGATTTCCTAAGTCTCTC 1781
Query 1953 ATCTGCTGGAGCAGCACAATCTCATTTCCCACTTCCAAACTCATTTCCACAGTATCAAAT 2012
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1782 ATCTGCTGGAGCAGCACAATCTCATTTCCCACTTCCAAACTCGTTTCCACAGTATCAGAT 1841
Query 2013 CTCTGCAGCTTACAATAGCCAGCTCTCACCTGCTACTTCTAGCCATCAGGTGCAGCAGCT 2072
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1842 CTCTGCAGCTTACAATAGCCAGCTCTCACCTGCAACTTCTAGCCATCAGGTGCAGCAGCT 1901
Query 2073 TTCTCCTTATCTAGCCAGTCGGTTCCAGACCGCTTACAACGCAAACCAGCAGCAGCAACA 2132
|||||| |||||||| ||| | ||||| ||||||||||||||||||||||||||||| ||
Sbjct 1902 TTCTCCGTATCTAGCAAGTAGATTCCAAACCGCTTACAACGCAAACCAGCAGCAGCAGCA 1961
Query 2133 ACAGCTTCAAAAAAGGCTATGGGCTGCTCAGTACAGACCAACAAATGGAAACACCATGCA 2192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1962 ACAGCTTCAAAAAAGGCTATGGGCTGCTCAGTACAGACCAACAAATGGAAACACCATGCA 2021
Query 2193 GTCGAACCAATACAGTAAACCAAACCTCTCCTTAAACCTGACTAGTATTCAACAACCTC- 2251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2022 ATCGAACCAATACAGTAAACCAAACCTCTCCTTAAACCTGACTAGTATTCAACAACCTCC 2081
Query 2252 TCCAGGTTTCTTCCTCCCCAAGGTACAACCACAATGTATCTCAACAACAACATCGTCTCA 2311
|| ||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 2082 TC-AGGTTACTTCCTCCCCAAGGTACAACAACAATGTATCTCAACAGCAACATCGTCTCA 2140
Query 2312 TGACTGCTGCTGCAGCAATGTCAATGAGCCATCAACATAATAA---TCCATCACGGGCGG 2368
|| ||||||| ||||||||||||||||| ||||| |||||||| ||| || ||| | |
Sbjct 2141 TGGCTGCTGCAGCAGCAATGTCAATGAGTCATCACCATAATAACAATCCTTCGCGGACAG 2200
Query 2369 TGATGAATAGACAAGAACACCATTTCCCACTTATATATGAAGATACAAGGACACCGTTGC 2428
||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 2201 TGATGAACAGACAAGAACACCATTTCCCACTTATCTATGAAGATACAAGGACACCATTGC 2260
Query 2429 AACTACTCTGCAATGAGCAATCGTGAAGCTGCCTGTTT-GCTTTATAGTTAAATAGTTCT 2487
||||||||||||| ||||| |||||||||||||||||| ||||||||| ||||||||| |
Sbjct 2261 AACTACTCTGCAACGAGCAGTCGTGAAGCTGCCTGTTTTGCTTTATAGCTAAATAGTTGT 2320
Query 2488 AAGGATTTTACAGATAGTTGAGaaaaaaa--CAGAGATCTTCGCCGGAATTTGAGATTCT 2545
||||||||||||||| ||||||||||||| |||||||||||| || ||||||||||
Sbjct 2321 AAGGATTTTACAGATGGTTGAGAAAAAAAAACAGAGATCTTCGTCGTAATTTGAGAT--- 2377
Query 2546 AGATGGTGATGAAAATCCGATGAACAAGGATTGTGA---GTGAGAGATGATTGA-TCACA 2601
| | ||||||||| | |||||||||||||||||| | ||||||||||||| || ||
Sbjct 2378 -G--G-TGATGAAAAGCAGATGAACAAGGATTGTGATCAGCGAGAGATGATTGAATCCCA 2433
Query 2602 CTTGTTTGAGAAAACCCTATAAAAATGTCTTTTAATGTAAATGATCCACGAGTTCTCAAA 2661
||||||||||||| |||| |||| || | | | | ||||||||||||
Sbjct 2434 CTTGTTTGAGAAACCCCT-TAAA--TG------A-T--A------C-ACGAGTTCTCAA- 2473
Query 2662 AGAGGCAAATTTTGTCGAGGACTCTGTTATCTGAAGTGAGAGACAGTCACAGAAAA 2717
||||||||||||||||| |||||||||||||||| |||||||||||||||| |||
Sbjct 2474 -GAGGCAAATTTTGTCGACGACTCTGTTATCTGAACTGAGAGACAGTCACAGGAAA 2528
Score = 396 bits (214), Expect = 5e-109
Identities = 437/531 (82%), Gaps = 70/531 (13%)
Strand=Plus/Plus
Query 10 CGACAGCTTCGGATTATCCGTCTTATCGGAATGTGGAAACTTTGAGAAAATACAAGAACA 69
|||||||||||||||||||||||| | ||||| |||||||||||||||||||| | ||
Sbjct 1 CGACAGCTTCGGATTATCCGTCTTTTGGGAATTTGGAAACTTTGAGAAAATAC-A-AA-G 57
Query 70 ACTCATAGAGAGACACACAAG-AGACGtttttttttttATCTCTTTTCTCTATTTGAAAT 128
| || | | || ||| | | || |||||||||| | | |||||||||||||||||
Sbjct 58 A--CACACA-AG--ACA-AGGTTTAC--TTTTTTTTTT-T-TATTTTCTCTATTTGAAAT 107
Query 129 CTCTGAATAGCTTCTGTGTTTTTCGATGATTTGTACTGTGTACGtttttttAtcttcttc 188
||||||||||||||||||||||||||||||||||||| ||| | || | | ||
Sbjct 108 CTCTGAATAGCTTCTGTGTTTTTCGATGATTTGTACT-TGT--G------TA-CGT-TT- 155
Query 189 tacttcttcttcttGTGTCAGTTACATATCAATG-TTTGATTTGATTGAAGAACAGTGAC 247
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 156 T-CTTCTTCTTCTTGTGTCAGTTACATATCAATGTTTTGATTTGATTGAAGAACAGTGAC 214
Query 248 TCCATTAATGAAGCTTTCCTTATAGTAAATGCTTTTTTCGaaaaaaaTCAACGATCTACA 307
||| || ||||||| | ||| | ||| ||| ||||||| || | || |
Sbjct 215 TCCTTTTATGAAGC--T--TTA-A--AAA------ATTC---AAAAATCTAC-A-CT--A 254
Query 308 ttttttttttttGTATTCACGGGTTGAATGTA-CAAACATTAATAATA-ATAAAAAATAA 365
|||||||||| ||||||||||||||||||| ||||||||||||||| | || | |||
Sbjct 255 --TTTTTTTTTT-TATTCACGGGTTGAATGTACCAAACATTAATAATAGTTTAATACTAA 311
Query 366 tttcttctttaagtcttcttttttttcttttggctttatttgtctcatctcttttatttc 425
|||||||| | ||| ||||||| |||| ||| |||| | | | |||||||||
Sbjct 312 --TCTTCTTT--CT-TTC-TTTTTTT-TTTT---TTT-TTTG--GC-T-T-TTTTATTTC 355
Query 426 ACGAAGAACCTGATTCTTCGAGACACGAGAAACGAttttataacttttctctcttttttc 485
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 ACGAAGAACCTGATTCTTCGAGACACGAGAAACGATTTTATAACTTTTCTCTCTTTTTT- 414
Query 486 ttttcctcttctttaacgtctttttacttttctctcttttctcttcttctt 536
| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 TCCTCTTCTTCTTTAACGTCTTTTTACTTTTCTCTCTTTTCTCTTCTTCTT 465
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103338834685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5