BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G75750.1

Length=667
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg926960 jgi|Araly1|926960|scaffold_202521.1                        512    1e-144


> Ahg926960 jgi|Araly1|926960|scaffold_202521.1
Length=341

 Score =  512 bits (277),  Expect = 1e-144
 Identities = 320/340 (94%), Gaps = 6/340 (2%)
 Strand=Plus/Plus

Query  68   CTCTCCTTGGAGAATCATGGCTATTTCAAAAGCTCTTATCGCTTCTCTTCTCATATCTCT  127
            ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  5    CTCTCCTTGGAGAATTATGGCTATTTCAAAAGCTCTTATTGCTTCTCTTCTCATATCTCT  64

Query  128  TCTTGTTCTCCAACTCGTCCAGGCTGATG---TCGAAAACTCACAGAAGAAAAATGGTTA  184
            ||||||||| |||||||||||||| ||||   |||||||||| ||||||||||| |||||
Sbjct  65   TCTTGTTCTTCAACTCGTCCAGGCCGATGTCTTCGAAAACTCTCAGAAGAAAAAAGGTTA  124

Query  185  CGCAAAGAAGATCGATTGTGGGAGTGCGTGTGTAGCACGGTGCAGGCTTTCGAGGAGGCC  244
            ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct  125  CGCAAAGAAGATCGATTGTGGGAGTGCTTGTGTAGCACGGTGCAGGCTCTCGAGGAGGCC  184

Query  245  GAGGCTGTGTCACAGAGCGTGCGGGACTTGCTGCTACAGGTGCAACTGTGTGCCTCCGGG  304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  185  GAGGCTGTGTCACAGAGCGTGCGGGACTTGCTGCTACAGGTGCAACTGTGTGCCTCCGGG  244

Query  305  TACGTACGGAAACTACGACAAGTGCCAGTGCTACGCTAGCCTCACCACCCACGGTGGACG  364
             || ||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct  245  CACATACGGTAACTACGACACGTGCCAGTGCTACGCTACCCTCACCACCCACGGTGGACG  304

Query  365  CCGCAAGTGCCCATAAGAAGAAACAAAGCTCTTAATTGCT  404
            ||||||||||||||||||| |  ||||||||||||| |||
Sbjct  305  CCGCAAGTGCCCATAAGAA-A--CAAAGCTCTTAATAGCT  341



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24474912714


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5