BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75760.1
Length=1352
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476723 jgi|Araly1|476723|fgenesh2_kg.2__1853__AT1G75760.1 1672 0.0
Ahg312925 jgi|Araly1|312925|fgenesh1_pm.C_scaffold_1001705 702 0.0
Ahg932042 jgi|Araly1|932042|scaffold_400030.1 401 5e-111
> Ahg476723 jgi|Araly1|476723|fgenesh2_kg.2__1853__AT1G75760.1
Length=1271
Score = 1672 bits (905), Expect = 0.0
Identities = 1079/1159 (93%), Gaps = 27/1159 (2%)
Strand=Plus/Plus
Query 143 CAATCATCACCGCACCAAGTTCCTAAAGGTTTCGACTTTACTGTTTCTATTTTCGGAAAG 202
|||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 108 CAAT-ATCATCGTACCAAGTTCCTAAAGGTTTCGACTTTACTGTTTCTATTTTCGGAAAG 166
Query 203 AGAGTGCAA-GATTGAAATCGAAGATGAAGGCGGC-AACAAGGCCGATCCACGCCGTGAC 260
| | || || ||||| ||||||||||||||||||| || ||||||||||||||||||||
Sbjct 167 AAATTG-AATGATTG-AATCGAAGATGAAGGCGGCGAA-GAGGCCGATCCACGCCGTGAC 223
Query 261 GACATGGGTTCGTCGGCAACCACCAAAGGTTAAAGGTTTTCTCGGTGTTGTCTCCGCCAT 320
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 224 GACATGGGTTCGTCGGCAACCACCAAAGGTTAAAGCTTTTCTCGGTGTTGTGTCCGCCAT 283
Query 321 GACTGCCCTCGTTTTGTTGAGAGTGATTGTTCATGACCACGACAATCTTTTTGTCGCTGC 380
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 284 GACTGCTCTCGTTTTGTTGAGAATGATTGTTCATGACCACGACAATCTTTTTGTCGCTGC 343
Query 381 TGAAGCTGTTCATTCCCTTGGAATCTCCGTCCTTATCTATAAACTCACCAAGGAGAGGAC 440
||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 344 TGAGGCTGTTCATGCCCTTGGAATCTCCGTCCTTATCTATAAACTCACCAAGGAGAAGAC 403
Query 441 TTGTGCTGGATTATCTCTCAAGTCACAAGAGCTAACAGCTCTGTTTTTGGCGGTGAGACT 500
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 404 TTGTGCTGGATTATCTCTCAAGTCACAAGAGCTAACGGCTCTGTTTTTGGCGGTGAGATT 463
Query 501 GTATTGTAGTTTTGTGATGGAGTTTGATATTCACACGTTACTTGACTCGGCTACATTGGT 560
||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct 464 GTATTGTAGTTTTGTGATGGAATTTGATATTCACACGTTGCTTGATTCGGCTACATTGGT 523
Query 561 GACTACACTTTTTGTTATCTATATGATCCGTTTTAAGCTCAAAGCTAGTTATATGGACGA 620
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 524 GACTACACTTTTTGTTATCTATATGATCCGTTTTAAGCTCAAAGCTAGTTACATGGAAGA 583
Query 621 CAAAGACAATTTTGCTATCTACTACGTCGTTATTCCATGTGTTGTTCTATCAGTACTCAT 680
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||
Sbjct 584 CAAAGACAATTTTGCTATCTACTACGTCGTTATTCCATGTTTTGTTCTATCAGTCCTTAT 643
Query 681 TCACCCATCAACACATCATCATATAATCAATAAGATTTCTTGGGCCTTCTGTGTTTACCT 740
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 644 TCACCCATCAACACATCATCATATAATCAATAAGATTTCTTGGGCCTTCTGCGTTTACCT 703
Query 741 TGAAGCTGTTTCAGTCCTTCCTCAACTTAGAGTCATGCAAAACACTAAGATCGTGGAGCC 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 TGAAGCTGTTTCAGTCCTTCCTCAACTTAGAGTCATGCAAAACACTAAGATCGTGGAGCC 763
Query 801 ATTTACAGCACATTACGTATTCGCTTTGGGGATCGCTAGGTTCTTGAGTTGTGCACACTG 860
||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 764 ATTCACAGCACATTACGTATTCGCTTTGGGGATAGCGAGGTTCTTGAGTTGTGCACACTG 823
Query 861 GGTCCTTCAGGTTTTGGACACTCGAGGGCGGTTATTGACTGCTTTAGGATATGGTTTCTG 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 GGTCCTTCAGGTTTTGGACACTCGAGGGCGGTTATTGACTGCTTTAGGATATGGTTTCTG 883
Query 921 GCCTATAATGGTTCTTCTCT-CTGAAATCGTCCAAACCTTCATTCTAGCCGACTTCTGCT 979
|||||||||||| || || | ||||||| ||||||||||||||||| |||||||||||||
Sbjct 884 GCCTATAATGGTCCT-CTTTTCTGAAATTGTCCAAACCTTCATTCTCGCCGACTTCTGCT 942
Query 980 ACTACTATGTCAAGAGTTTAATGGGTGGTCAGCTTGTTCTTCGTCTCCCGTCAGGTGTTG 1039
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 943 ACTACTATGTCAAGAGTTTAATGGGTGGTCAGCTCGTTCTTCGTCTCCCATCAGGTGTTG 1002
Query 1040 TGTGAAATTTGGTGTA-------TAAGAAGAAGATACGGTGTTGCTTTGAGCTTATGGTG 1092
||| |||||||||| | ||||||||||||| |||||||||| ||||||||| ||
Sbjct 1003 TGTAAAATTTGGTGGAAACGAGATAAGAAGAAGATATGGTGTTGCTT-GAGCTTATGATG 1061
Query 1093 TGGTGTAATGATCCATGTCTTGCAGGCTAATCGTTTTGAGTCTTCTCTAATCTCtttttt 1152
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 TGGAGTAATGATCCATGTCTTGCAGGCTAATCGTTTTGAGTCTTCTCTAATCTCTTTTTT 1121
Query 1153 ttttttttttccctttatgttttttct-tttCTTAGAGGACTTGTAAAGaaaaaaaGGGA 1211
| || ||||||||||||||| | |||||| |||||||||||||||||||| | |
Sbjct 1122 TCTT------CCCTTTATGTTTTTTTTCTTTCTTGGAGGACTTGTAAAGAAAAAA-GAAA 1174
Query 1212 ATTAATTAGAGATTTTGAGTTTTAACAT-AT-TAATTTAAAACTTGTTTCCAGAAGCAAG 1269
||| |||| ||||| |||||||| | || || || ||| | ||||||||||||||||
Sbjct 1175 ATTGATTATAGATTATGAGTTTTTATATTATGTAGTTTTATG-TTGTTTCCAGAAGCAAT 1233
Query 1270 TAGATGAATGTTTTGGTGT 1288
|||||||||| ||||||||
Sbjct 1234 TAGATGAATGCTTTGGTGT 1252
> Ahg312925 jgi|Araly1|312925|fgenesh1_pm.C_scaffold_1001705
Length=846
Score = 702 bits (380), Expect = 0.0
Identities = 647/775 (83%), Gaps = 22/775 (3%)
Strand=Plus/Plus
Query 226 ATGAAGGCGGCAACAAG-G-CCGATCCACG-CCGTGACGACATGGGTTCGTCGGCAACCA 282
|||||||||| | ||| | ||||| || | |||||| | | ||| |||| ||||||||
Sbjct 1 ATGAAGGCGG--AGAAGAGTCCGATTCA-GTCCGTGATGGCGTGGATTCGCCGGCAACCG 57
Query 283 CCAAAGGTTAAAGG-TTTTCTCGGTGTTGTCTCCGCCATGACTGCCCTCGTTTTGTTGAG 341
||||||| |||||| |||||| ||||| || | || ||||| | || ||||| | ||
Sbjct 58 CCAAAGG-TAAAGGCTTTTCTTGGTGTGGTAACGGCAATGACGGTGCTTGTTTTCCTCAG 116
Query 342 AGTGATTGTTCATGACCACGACAATCTTTTTGTCG-CTGCTGAAGCTGTTCATTCCCTTG 400
|| ||||||||||| |||||||| ||||| | | || |||| ||||||||| || |||
Sbjct 117 GGTAATTGTTCATGAACACGACAACCTTTTCATTGCCT-CTGAGGCTGTTCATGCCTTTG 175
Query 401 GAATCTCCGTCCTTATCTATAAACTCACCAAGGAGAGGACTTGTGCT-GGATTATCTCTC 459
||||| | || |||||||| || ||||| ||||||| |||||| ||| ||| ||||||||
Sbjct 176 GAATCGCTGTTCTTATCTACAAGCTCACAAAGGAGAAGACTTGCGCTGGGA-TATCTCTC 234
Query 460 AAGTCACAAGAGCTAACAGCTCTGTTTTTGGCGGTGAGACTGTATTGTAGTTTTGTGATG 519
||| |||| |||||||| ||| ||||| |||| |||||| |||||||||| ||||| |||
Sbjct 235 AAGACACAGGAGCTAACGGCTTTGTTTCTGGCTGTGAGATTGTATTGTAGCTTTGTAATG 294
Query 520 GAGTTTGATATTCACACGTTACTTGACTCGGCTACATTGGTGACTACACTTTTTGTTATC 579
||||||||| |||| || |||||||| || ||||| |||||||| || |||| || ||
Sbjct 295 GAGTTTGATCTTCATACATTACTTGATTCAGCTACTTTGGTGACCACTCTTTGGGTCATT 354
Query 580 TATATGATCCGTTTTAAGCTCAAAG-CTAGTTATATGGACGACAAAGACAATTTTGCTAT 638
|||||||| ||||| ||||| | | ||| ||||||||| ||||||||||||||||||||
Sbjct 355 TATATGATTCGTTTCAAGCT-TAGGCCTACTTATATGGAAGACAAAGACAATTTTGCTAT 413
Query 639 CTACTACGTCGTTATTCCATGTGTTGTTCTATCAGTAC-TCATTCACCCATCAACAC-AT 696
||||| |||||| || ||||||| |||||| || | | ||||||| |||||||||| |
Sbjct 414 CTACTTCGTCGTAATCCCATGTGCTGTTCTGTC-TTTCTTCATTCATCCATCAACACGA- 471
Query 697 CATCATATAATCAATAAGATTTCTTGGGCCTTCTGTGTTTACCTTGAAGCTGTTTCAGTC 756
|| || || || || | |||||||||||| ||||||||||| |||||||||||||||||
Sbjct 472 CACCACATCATAAACAGGATTTCTTGGGCATTCTGTGTTTATCTTGAAGCTGTTTCAGTT 531
Query 757 CTTCCTCAACTT-AGAGTCATGCAAAACACTAAGATCGTGGAGCCATTTACAGCACATTA 815
||||||||| || ||||||||||| ||||||||||||||||| ||||| ||||| |||||
Sbjct 532 CTTCCTCAA-TTAAGAGTCATGCAGAACACTAAGATCGTGGAACCATTCACAGCTCATTA 590
Query 816 CGTATTCGCTTTGGGGATCGCTAGGTTCTTGAGTTGTGCACACTGGGTCCTTCAGGTTTT 875
|||||| |||||||| |||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 591 CGTATTTGCTTTGGGAATCGCTAGGTTCTTGAGTTGTGCACACTGGATCCTTCAGGTGTT 650
Query 876 GGACACTCGAGGGCGGTTATTGACTGCTTTAGGATATGGTTTCTGGCCTATAATGGTTCT 935
||| || |||||||||||| ||||||| ||||| | ||| | |||||| ||||||| ||
Sbjct 651 GGATACGCGAGGGCGGTTACTGACTGCATTAGGTTCTGGACTGTGGCCTGTAATGGTCCT 710
Query 936 TC-TCTCTGAAATCGTCCAAACCTTCATTCTAGCCGACTTCTGCTACTACTATGT 989
| |||||||||||||||||||||||||||| || || |||||||| ||||||||
Sbjct 711 -CATCTCTGAAATCGTCCAAACCTTCATTCTTGCAGATTTCTGCTATTACTATGT 764
> Ahg932042 jgi|Araly1|932042|scaffold_400030.1
Length=853
Score = 401 bits (217), Expect = 5e-111
Identities = 620/814 (76%), Gaps = 30/814 (4%)
Strand=Plus/Plus
Query 244 CCGATCCACGCCGTGACGACATGGGTTCGTCGGCAACCACCAAAGGTTAAAGGTTTTCTC 303
||||||||||| || |||||||||| | |||| ||||||||||| |||| ||| ||
Sbjct 33 CCGATCCACGCGGTTTCGACATGGGTGAGAAGGCAGCCACCAAAGGTGAAAGCTTTCCTT 92
Query 304 GGTGTTGTCTCCGCCATGACTGCCCTCGTT-TTGTTGAGAGTGATTGTTCATGACCACGA 362
| || || || | ||| | || || ||| || | ||| | || ||||| || |||||
Sbjct 93 GCCGTCGTATCTGGTATGGCGGCGCTTGTTCTT-CTCAGATTCATCGTTCACGATCACGA 151
Query 363 CAATCTTTTTGTCGCTGCTGAAGCTGTTCATTCCCTTGGAATCTCCGTCCTTATCTATAA 422
|||||| || || || || |||||||||||||| |||||||||| || |||||||||||
Sbjct 152 CAATCTCTTCGTTGCCGCCGAAGCTGTTCATTCTATTGGAATCTCTGTTCTTATCTATAA 211
Query 423 ACTCACCAAGGAGAGGACTTGTGCTGGATTATC-TCTCAAGTCACAAGAGCTAACAGCTC 481
||||| ||||||| ||||||||||||||| || | | || || || ||||| || ||
Sbjct 212 ACTCATGAAGGAGAAGACTTGTGCTGGATTGTCAT-TGAAATCTCAGGAGCTTACGGCAA 270
Query 482 TGTTTTTGGCGGTGAGACTGTATTGTAGTTTTGTGATGGAGTTTGATATTCACA-CGTTA 540
| ||| | || ||||| || ||||| |||||||| ||||| | ||| || || | | ||
Sbjct 271 TATTTCTAGCTGTGAGGCTTTATTGCAGTTTTGTAATGGAATATGACATACATACCATT- 329
Query 541 CTTGACTCGGCTACATTGGTG-ACTACACTTTTTGTTATCTATATGATCCGTTTTAAGCT 599
|| |||| |||||| |||| | || ||||| | ||||| ||||||||||||||||||||
Sbjct 330 CTGGACTTGGCTACTTTGG-GAACAACACTCTGGGTTATATATATGATCCGTTTTAAGCT 388
Query 600 CAAAGCTAGTTATATGGACGACAAAGACAATTTTGCTATCTACTACGTCGTTATT-CCAT 658
|||||||| ||| ||||| || |||||||| |||||| |||| || || | | | || |
Sbjct 389 CAAAGCTACTTACATGGAGGAAAAAGACAACTTTGCTCTCTATTATGT-GCTCGTGCCCT 447
Query 659 GTGTTGTTCTATCAGTACTCATTCACCCATCAACA-CATCATCA-TATAATCAATAAGAT 716
|||| || ||| | ||| | ||||| |||||||| || || || |||| | |||| ||
Sbjct 448 GTGTCGTGCTAGCTGTATTGATTCATCCATCAACGTCA-CA-CAATATATTGAATA-GAA 504
Query 717 T-TCTTGGGCCTTCTGTGTTTACCTTGAAGCTGTTTCAGTCCTTCCTCAACTTAGAGTCA 775
| || |||| |||||||||||||| |||||||||||||| || || || || ||||| |
Sbjct 505 TATCCTGGGGATTCTGTGTTTACCTCGAAGCTGTTTCAGTACTGCCACAGCTGAGAGTGA 564
Query 776 TGCAAAACACTAAGATCGTGGAGCCATTTACAGCACATTACGTATTCGCT-TTGGGGATC 834
|||| ||||| ||||| || || || || || || ||||| || || || |||| | |
Sbjct 565 TGCAGAACACAAAGATTGTCGAACCCTTCACGGCTCATTATGTTTTTGCACTTGGAG-TA 623
Query 835 GCTAGGTTCTTGAGTTGTGCACACTGGGTCCTT-CAGGTTTTGGACACTCGAGGGCGGTT 893
|| || || || || |||||||||||||| || ||| || ||||||| || || || |
Sbjct 624 GCAAGATTTTTTAGCTGTGCACACTGGGTT-TTACAGATTATGGACACCCGCGGACGCCT 682
Query 894 A-TTG-ACTGCTTTAGGATATGGTTTCTGGCCTATA-ATGGTTCTTCTCTCTGAAATCGT 950
||| | |||| || ||||| | ||||| || |||||| | |||| ||||||||
Sbjct 683 GCTTGTAGTGCTG--GGTTATGGACTATGGCC-ATCGATGGTTATAATCTCAGAAATCGT 739
Query 951 CCAAACCTTCATTCTAGCC-GACTTCTGCTACTACTATGTCAAGAGT-TTAATGGGTGGT 1008
|||||| ||||| || | | || ||||| |||||||| || || ||| || | |||||
Sbjct 740 CCAAACATTCAT-CTTGGCAGATTTCTGTTACTACTACGTTAAAAGTGTTT-TCGGTGGC 797
Query 1009 CAGCTTGTTCTTCGTCTCCCGTCAGGTGTTGTGT 1042
||||||||||| | || || || || |||||||
Sbjct 798 CAGCTTGTTCTAAGGCTTCCATCTGGGGTTGTGT 831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50589110859
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5