BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75770.1
Length=862
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909198 jgi|Araly1|909198|Al_scaffold_0002_2279 904 0.0
> Ahg909198 jgi|Araly1|909198|Al_scaffold_0002_2279
Length=711
Score = 904 bits (489), Expect = 0.0
Identities = 607/661 (92%), Gaps = 19/661 (3%)
Strand=Plus/Plus
Query 76 ACCGTGACGGCAAAGGCAAGAAGAGAGATGATTTTTTCGATAGCATTGACTACGAAATTT 135
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 59 ACCGTGACGGCAAAGGCAAGAAGAAAGATGATTTTTTCGATAGAATTGACTACGAAATTT 118
Query 136 CTTCTATCTTATTGCAACTTTCACATCCTGTCATATTCTCTTCTGATTCTCCTGTGTTAC 195
|||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
Sbjct 119 CTTCAATCTTATTGCAACTTTCACATCCGGTCATATTCTCTTCTGATTCTCCTTTGTTCC 178
Query 196 ATAAATGGGGTCGCACTAAAAAGAGGTCTTCTTCTTC-TTCTCACCTGCATCCGCCGGAA 254
|||||||||||||||||||||||||||| |||| ||| | |||||||||||||||||||
Sbjct 179 ATAAATGGGGTCGCACTAAAAAGAGGTCCTCTTTTTCAAT-TCACCTGCATCCGCCGGAA 237
Query 255 CCGGTGATAAAATCGCTGCCGTGTATGGCTGATG-TCGGCGATATGGGAAGTAATTCGAG 313
|||||||| |||||||||||||||| ||| || | |||||||||||||||||||||||||
Sbjct 238 CCGGTGATGAAATCGCTGCCGTGTACGGCGGA-GTTCGGCGATATGGGAAGTAATTCGAG 296
Query 314 TTCTTCGTGCTTAACCGGTGAGGCCAAGAAAA-CCAATTCTCAAATCATTAAAAAGGGTT 372
||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 297 TTCGTCGTGCTTAACCGGTGAGGCCAA-AAAAGCCAATTCTCAAATCATTAAAAAGGGTT 355
Query 373 TAGAAGAAGAATTTTGTAGGAAAAATCAGAGTTCTTCAGTCCTCGAG-----G-CGGAGA 426
|||||||||||||||||| ||| ||||||||||||||||||||||| | |||| |
Sbjct 356 TAGAAGAAGAATTTTGTACTAAATATCAGAGTTCTTCAGTCCTCGAGATACAGGCGGATA 415
Query 427 CAGGTTTACTTAGGG-AGCAAGCTGGTTTAATAGCCCAGCCCATAAGATACGATCAACAA 485
||||||||||||| | | |||| |||||| |||||||||||||| |||| ||||||||
Sbjct 416 CAGGTTTACTTAGAGCA-CAAGTTGGTTTTATAGCCCAGCCCATTAGATGTGATCAACAT 474
Query 486 CTACCGTTTTTTGCGGTTGATCGTACGGTCAATGTGAGGGATGTT-GAAACGGCGTCGTT 544
||||||||| |||||||||||||||||||||| || |||||| || ||||||||||||||
Sbjct 475 CTACCGTTTATTGCGGTTGATCGTACGGTCAAGGTAAGGGAT-TTCGAAACGGCGTCGTT 533
Query 545 GCGAATGGATAACTTGGAACGACGTGGCTTTGATCTGAACCTTCTTCCAGCAGCAGAGGA 604
||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 534 GCGTATGGATAACTTGGAACGACGTGGCTTTGATCTGAACCTTC--C-AGCAGCAGAGGA 590
Query 605 GGGTTTTCAGAGAGTGCCAAATAAAGTCCAAGTAGCTGCTCAAGCAAGACAAAGAAGACT 664
|||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 591 GGGTTTTCAGAGTGTGGCGAATAAAGTCCAAGTAGCTGCTCAAGCAAGACAAAGAAGACT 650
Query 665 AGGTTTGATTCGATCTAAGAAGCTTTTTAATAGATTCATCTCTTCTTATCAATTTAAGTA 724
||||||||||||||| |||||||||| |||| |||||||||||||||||||| |||||||
Sbjct 651 AGGTTTGATTCGATCCAAGAAGCTTTATAATGGATTCATCTCTTCTTATCAACTTAAGTA 710
Query 725 G 725
|
Sbjct 711 G 711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31908881529
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5