BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75790.1
Length=1977
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476726 jgi|Araly1|476726|fgenesh2_kg.2__1856__AT1G75790.1 2531 0.0
> Ahg476726 jgi|Araly1|476726|fgenesh2_kg.2__1856__AT1G75790.1
Length=1684
Score = 2531 bits (1370), Expect = 0.0
Identities = 1576/1676 (94%), Gaps = 11/1676 (1%)
Strand=Plus/Plus
Query 134 TTTCGCGATGAGACATGTCTTTGTCGAGGT-GTTGGTTCTGATCTCTTTGGTCATCTTGG 192
|||||||||||| ||||||||||||||||| ||| |||||||| |||||||| |||||||
Sbjct 1 TTTCGCGATGAGGCATGTCTTTGTCGAGGTGGTT-GTTCTGATATCTTTGGTTATCTTGG 59
Query 193 AGTTGAGCTATGCGTTTGCACCAATC-TCATCGTATCAATGGGTCGTCTCGTATTCTCAA 251
|||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||
Sbjct 60 AGTTGAGCTATGCGTTTGCACCAATCGT-ATCGTATCAATGGGTCGTCTCTTATTCTCAA 118
Query 252 CGTTTCATTCTTGGAGGCAACAAGCAGGTTATAGTGATCAACGACATGTTCCCTGGACCG 311
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 119 CGTTTCATTCTTGGAGGCAACAAGCAGGTTATAGTGATCAACGACATGTTTCCTGGACCG 178
Query 312 ATCCTTAATGCAACAGCAAACGATATCATTGTCGTTAACATTTTCAACAATTTGCCCGAA 371
|| ||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||
Sbjct 179 ATGCTTAATGCAACAGCAAACGATGTCATAATCGTTAACATTTTCAACAATTTGCACGAA 238
Query 372 CCCTTCCTCATGACTTGGAATGGATTGCAATTGCGGAAGAACTCGTGGCAAGATGGAGTT 431
||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 239 CCCTTTCTCATGACCTGGAATGGCTTGCAATTGCGGAAGAACTCGTGGCAAGATGGAGTT 298
Query 432 CGAGGGACAAACTGTCCCATACTACCGGGGACAAATTGGACGTACCGTTTTCAGGTGAAG 491
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 299 CGAGGGACAAACTGTCCCATACTACCGGGGACAAATTGGACTTACCGATTTCAGGTGAAG 358
Query 492 GATCAAATTGGAAGTTACTTTTATTTTCCGA-CCCTTCTACTTCAGAAAGCTGCCGGAGG 550
||||| || |||||||||||||| ||||| | | |||||||| |||||||| ||||||||
Sbjct 359 GATCAGATCGGAAGTTACTTTTACTTTCC-ATCGCTTCTACTCCAGAAAGCGGCCGGAGG 417
Query 551 ATACGGTGCTATTAGAATCTATCCCCCAGAACTTGTCCCAGTCCCATTCCCTAAGCCCGA 610
|||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||
Sbjct 418 ATACGGTGCTATTAGAATCTATACCCCAGAACTTGTCCCGGTTCCATTCCCTAAGCCCGA 477
Query 611 CGAAGAATACGACATCTTGATTGGAGATTGGTTTTAT-CTCGACCATACAGTTATGAGAG 669
|||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||
Sbjct 478 TGAAGAATACGACATCTTGATTGGAGATTGGTTCTATGC-CGACCATACAGTTATGAGAG 536
Query 670 CTTCACTTGACGCTGGTCACAGTTTGCCAAATCCTGATGGTATTCTTTTTAACGGGCGTG 729
||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 537 CTTCACTTGACACTGGTCACAGCTTGCCAAAGCCTGATGGTATTCTTTTTAACGGGCGTG 596
Query 730 GCCCTGAAGAGACCTTCTTTGCATTTGAACCAGGCAAAACATATAGGCTAAGAATATCAA 789
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 597 GACCTGAAGAGACCTTCTTTGCATTTGAACCAGGTAAAACATATAGGCTAAGAATATCAA 656
Query 790 ACGTGGGTCTCAAAACATGCTTAAACTTCAGAATCCAAGACCACGATATGCTTCTAGTTG 849
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 657 ACGTGGGTCTCAAAACATGCTTAAACTTCAGAATCCAAGACCATGATATGCTTCTAGTTG 716
Query 850 AGACAGAGGGTACGTATGTTCAAAAACGTGTTTACTCGAGCCTGGACATCCACGTAGGCC 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 AGACAGAGGGTACGTATGTTCAAAAACGTGTTTACTCGAGCCTGGACATCCACGTAGGCC 776
Query 910 AATCATACTCTATTCTTGTCACTGCCAAAACCGACCCGGTTGGAATTTACCGGTCTTACT 969
||||||||||| |||| ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 777 AATCATACTCTGTTCTAGTCACTGCCAAAACCGACCCGGTTGGAATCTACCGGTCCTACT 836
Query 970 ACATATTCGCCACAGCTCGGTTCACTGATTCCTACCTTGGCGGTATAGCTTTAATTCGAT 1029
|||||| ||||||||| ||||||||||||| |||||||||||||| |||||| ||| |||
Sbjct 837 ACATATACGCCACAGCCCGGTTCACTGATTTCTACCTTGGCGGTAGAGCTTTGATTAGAT 896
Query 1030 ATCCCGGTTCCCCACTTGACCCAGTCGGACAAGGTCCACTCGCACCTGCTTTGCAAGATT 1089
||||| |||||||||||| || ||||||| || ||||||||||||||||| | ||||
Sbjct 897 ATCCCAATTCCCCACTTGATCCGGTCGGACCAGTTCCACTCGCACCTGCTTCGTGGGATT 956
Query 1090 -TTGGTTCCTCAGTTGAACAAGCCCTTTCCATTAGAATGGACCTGAACGTTGGAGCAGCA 1148
| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 957 ACT-CTTCCTCAGTTGAACAAGCCCTTTCCATTAGAATGGACCTAAACGTTGGAGCAGCA 1015
Query 1149 AGATCGAACCCTCAAGGTTCGTACCACTATGGACGAATAAACGTAACCAGAACGATAATA 1208
||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 1016 AGATCGAACCCACAAGGTTCGTACCACTACGGACGTATAAACGTAACCAGAACAATAATA 1075
Query 1209 TTACATAACGACGTTATGTTATCGTCGGGCAAACTACGGTATACGATTAACGGCGTTTCG 1268
|||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||
Sbjct 1076 TTACATAACGACGTTATGCTGTCGTCGGGCAAACTACGTTATACGATTAACGGCGTTTCG 1135
Query 1269 TTTGTCTACCCCGAGACTCCGTTAAAGCTCGTTGATCATTTTCAGCTAAATGACACGATA 1328
||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1136 TTTGTCTACCCTGATACTCCGTTAAAGCTCGTTGATCATTTCCAGCTAAATGACACGATT 1195
Query 1329 ATCCCTGGCATGTTCCCGGTTTATCCATCCAACAAAACACCGACTCTTGGAACTTCAGTG 1388
||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1196 ATCCCCGACATGTTCCCGGTTTATCCATCCAACAAAACACCGAGTCTTGGAACTTCAGTG 1255
Query 1389 GTCGATATTCATTACAAAGATTTCATCCACATCGTGTTCCAGAACCCTCTATTTGGATTG 1448
||||||||||||||||||||||| ||||||||||||||||||| ||| |||||| ||||
Sbjct 1256 GTCGATATTCATTACAAAGATTTTGTCCACATCGTGTTCCAGAATCCTTTATTTGAATTG 1315
Query 1449 GAGAGTTATCACATCGATGGTTACAATTTCTTCGTTGTCGGATATGGATTTGGAGCTTGG 1508
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1316 GAGAGTTATCACATCGATGGTTACAATTTTTTCGTTGTCGGATATGGATTTGGAGCTTGG 1375
Query 1509 TCTGAAAGCAAAAAAGCTGGATATAACTTAGTAGATGCTGTTTCACGGTCAACAGTTCAG 1568
||||| ||||||| |||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1376 TCTGAGAGCAAAAGAGCTGGATATAACTTAGTTGATGCTGTTTCACGGTCAACAATTCAG 1435
Query 1569 GTTTATCCATATTCGTGGACAGCAATATTGATAGCTATGGATAATCAAGGAATGTGGAAC 1628
|||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||
Sbjct 1436 GTTTATCCATATTCGTGGGCAGCAATACTAATAGCTATGGATAATCAAGGAATGTGGAAC 1495
Query 1629 GTGAGATCACAGAAAGCAGAGCAATGGTATCTTGGTCAAGAGCTTTATATGAGAGTTAAA 1688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 GTGAGATCACAGAAAGCAGAGCAATGGTATCTTGGTCAAGAGCTTTATATGAGAGTTAAA 1555
Query 1689 GGTGAAGGAGAAGAAGATCCTTCGACTATTCCGGTTAGAGATGAAAATCCGATACCGGGA 1748
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1556 GGTGAAGGACAAGAAGATCCTTCGAATATTCCGGTTAGAGATGAAAATCCGATACCGGGA 1615
Query 1749 AATGTCATCCGTTGTGGCAAAGTTCGATAATAATTAATTGTCTGAAATAAT-AAAA 1803
||||||||||||||||||||||||| |||||| ||||||| | ||||||| ||||
Sbjct 1616 AATGTCATCCGTTGTGGCAAAGTTCTTTAATAACTAATTGTTTTAAATAATTAAAA 1671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74314067995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5