BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75800.1
Length=1507
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926966 jgi|Araly1|926966|scaffold_202527.1 1655 0.0
Ahg943828 jgi|Araly1|943828|scaffold_700057.1 78.7 1e-13
> Ahg926966 jgi|Araly1|926966|scaffold_202527.1
Length=1034
Score = 1655 bits (896), Expect = 0.0
Identities = 987/1032 (96%), Gaps = 2/1032 (0%)
Strand=Plus/Plus
Query 90 TTCTTCTTCTCCAATTCAATGGCTCTTCCGTTGCCATTGATCTTCCTTATCTTCTCTCAT 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 4 TTCTTCTTCTCCAATTCAATGGCTCTTCCGTTGCCATTGATCTTCCTTATCTTCTCTAAT 63
Query 150 TTGTTCGTTTCTGGAGTTAGATCAACGAGCTTCATTATGGTGAACAAATGCGAATACACA 209
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 64 TTGTTCGTTTCTGGAGTTAGATCAACGAGCTTCGTAATGGTGAACAAATGCGAATACACA 123
Query 210 GTCTGGCCTGGACTTTTATCAAACGCCGGAGTTCCACCACTTCCGACGACCGGATTCGTT 269
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 GTCTGGCCTGGACTTTTATCAAACGCCGGAGTTCCACCACTTCCGACGACCGGATTCGTA 183
Query 270 CTCCAAAAAGGCGAAGAACGAACAATCAGCGCTCCAACTTCATGGGGAGGAAGATTCTGG 329
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 184 CTCCAAAAAGGCGAAGAACGAACAATCAACGCTCCAACTTCATGGGGAGGAAGATTCTGG 243
Query 330 GGGAGAACTCAATGTTCCACCGACACCGACGGAAAATTCACTTGTCTCACCGGAGATTGC 389
|| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 244 GGAAGAACTCAATGCTCCACCGACACCGACGGAAAATTCACTTGCCTCACCGGAGATTGC 303
Query 390 GGATCTGGTACCCTCGAATGCTCCGGATCCGGAGCAACACCACCAGCAACACTAGCGGAA 449
||||| || ||| ||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 304 GGATCCGGAACCATCGAATGCTCCGGATCCGGAGCAGCACCTCCAGCAACACTAGCGGAA 363
Query 450 TTCACACTAGACGGATCTAACGGACTCGATTTCTACGACGTTAGTCTCGTCGACGGTTAC 509
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 364 TTCACACTTGACGGATCTAACGGACTCGATTTCTACGACGTAAGTCTCGTCGACGGTTAC 423
Query 510 AACGTCCCGATGCTAGTGGCTCCACAAGGAGGCTCGGGTTTAAACTGTAGCAGCACCGGA 569
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 424 AACGTCCCGATGCTAGTGGCTCCACAAGGAGGCTCTGGTTTAAACTGTAGCAGCACCGGA 483
Query 570 TGCGTTGTAGATCTGAACGGTTCGTGTCCGTCGGAGCTTAAAGTGACGAGTTTAGACGGC 629
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 484 TGCGTTGTAGATCTGAACGGTTCGTGTCCGTCGGAGCTAAAAGTGACGAGTTTAGACGGC 543
Query 630 AGAGGTAAACAATCCATGGGATGTAAAAGCGCGTGTGAAGCTTTTCGTACGCCGGAGTAT 689
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 GGAGGTAAACTATCTATGGGATGTAAAAGCGCGTGTGAAGCTTTTCGTACGCCGGAGTAT 603
Query 690 TGTTGCAGCGGCGCCCACGGTACACCTGACACGTGTAAACCGTCGTCGTACTCGTTGATG 749
|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 604 TGTTGCAGCGGCGCGTACGGTACACCTGACACGTGTAAACCGTCGTCGTATTCGTTGATG 663
Query 750 TTTAAAACTGCGTGTCCACGTGCTTACAGCTACGCTTACGATGATCAGAGTAGTACCTTC 809
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 TTTAAAACCGCGTGCCCACGTGCTTACAGCTACGCTTACGATGATCAGAGTAGTACCTTC 723
Query 810 ACATGTGCTGAATCTCCTAATTACGTTATCACGTTTTGCCCTACTCCTAACACCAGTCAA 869
|| ||||| ||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 724 ACTTGTGCCAAATCTCCTAATTACGTTATCACGTTTTGCCCAACGCCTAACACCAGTCAA 783
Query 870 AAATCATCTCAAGATCAGAGCCCAGATCCCAAACCGACGACACCAACCGGGA-CGTCGTC 928
||||||||||||||||||| ||||||||| |||| ||||||| || |||||| |||||||
Sbjct 784 AAATCATCTCAAGATCAGAACCCAGATCCGAAACAGACGACAGCA-CCGGGAACGTCGTC 842
Query 929 GACAACTCCTGCCGGAGATAGTAGTACGACGTGGTCACCGGTAGATACATCAATGATATA 988
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 843 GACAACTCCTGCCGGAGACAGTAGTACGACGTGGTCACCGGTAGATACATCGATGATATA 902
Query 989 CGAAGGAGCTTTGGATCAAAACAAAGGATCACCGTCCACGTGTCATCTTTCGTTATGTGG 1048
|||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||
Sbjct 903 CGAAGGAGCTTTGGATCAGAGCAAAGGATCACCAACCACGTGTCATCTTTCGTTATGTGG 962
Query 1049 AATCACAGTCACACTTGCGCTGGCCTTTTGTCGGATGTGGCGGCTCTTTTGACACCTAAC 1108
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GATCACAGTCACACTTGCGCTGGCCTTTTGTCGGATGTGGCGGCTCTTTTGACACCTAAC 1022
Query 1109 TTTGTCTCCCGC 1120
| |||| |||||
Sbjct 1023 TCTGTCGCCCGC 1034
> Ahg943828 jgi|Araly1|943828|scaffold_700057.1
Length=1083
Score = 78.7 bits (42), Expect = 1e-13
Identities = 116/151 (77%), Gaps = 7/151 (5%)
Strand=Plus/Plus
Query 378 ACCGGAGATTGCGGATCTGGTACCCTCGAATGCTCCGGATC-CGGAGCAACACCACCAGC 436
||||| |||||||| || || |||||||| ||||| | || || |||| || |
Sbjct 314 ACCGGTGATTGCGGCTCCAACACTATCGAATGCGCCGGA-CTTGGCGCCGCACCGCCTGT 372
Query 437 AACACTAGCGGAATTCACACTAGACGGATCTAACGGAC-TCGATTTCTACGACGTTAGTC 495
||| || || || ||||| |||| | | || ||| | ||||||||||||||||||||
Sbjct 373 AACTCTCGCCGAGTTCACTCTAG--GCA-CTGGCGG-CGACGATTTCTACGACGTTAGTC 428
Query 496 TCGTCGACGGTTACAACGTCCCGATGCTAGT 526
||||||||||||||||| | |||||| ||||
Sbjct 429 TCGTCGACGGTTACAACATACCGATGATAGT 459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56411652845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5