BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75820.1
Length=3431
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476729 jgi|Araly1|476729|fgenesh2_kg.2__1859__AT1G75820.1 5038 0.0
Ahg347425 jgi|Araly1|347425|fgenesh1_pg.C_scaffold_5000817 346 7e-94
Ahg344577 jgi|Araly1|344577|fgenesh1_pg.C_scaffold_4000919 346 7e-94
Ahg938283 jgi|Araly1|938283|scaffold_502474.1 335 1e-90
> Ahg476729 jgi|Araly1|476729|fgenesh2_kg.2__1859__AT1G75820.1
Length=3398
Score = 5038 bits (2728), Expect = 0.0
Identities = 3180/3394 (94%), Gaps = 47/3394 (1%)
Strand=Plus/Plus
Query 15 TTCACAAATGATAAATCTACTTAAGACAGTAACCATAACAAGATTTACAAGATAATTTGA 74
|||||||||||||||||||||| ||||| |||||| | ||| ||||||||||||| ||
Sbjct 1 TTCACAAATGATAAATCTACTT-AGACAATAACCACACCAAAATTTACAAGATAA-TT-- 56
Query 75 AAAATGAACACATAAAAGTATTTTGGCGCATTAT-TTTTAATAATAACAATATTTATGTA 133
|| | |||| |||||||||||||||| |||| ||||||||||||| ||||||
Sbjct 57 ----TG-----A-AAAA-TATTTTGGCGCATTATATTTTTATAATAACAATATATATGTA 105
Query 134 AAGTCACATAAAAGTATATATTCGCTCACAAAGTCTTACGGTATTTAGAACAGTAGTACC 193
||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||
Sbjct 106 AAGTCACATAAAAGTATTTATTCTCTCACAAAGTCTTACGGTATTTAGAAC---AGTACC 162
Query 194 ACATCGATTCTCTTCATCTTCTTCTTCATAATATGCCATTGTTCATGTCTCTGTGTCCTA 253
| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 163 AAATCGATTCTCTTCATCTTCCTCTTCATAATATGCCATTGTTGATGTCTCTGTGTCCTA 222
Query 254 TCGCATAACACTCACGCTATCTTATTATTTTCTCTCGCTCTTTCTCACTGAGAGGACA-C 312
||||||||||||||||||| ||||||||| ||| || ||||||||| |||| |||||| |
Sbjct 223 TCGCATAACACTCACGCTAACTTATTATTCTCTATCTCTCTTTCTCTCTGAAAGGACATC 282
Query 313 -T---aaaaaaaTGGCGATGAGACTTTTGAAGACTCATCTTCTGTTTCTGCATCTGTATC 368
| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 TTAAAAAAAAAATGGCGTTGAGACTTTTGAAGACTCATCTTCTGTTTCTGCATCTGTATC 342
Query 369 TATTTTTCTCACCATGTTTCGCTTACACTGACATGGAAGTTCTTCTCAATCTCAAATCCT 428
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 343 TATTTTTCTCACCATGTTTCGCTAACACTGACATGGAAGTTCTCCTCAATCTCAAATCCT 402
Query 429 CCATGATTGGTCCTAAAGGACA-CGGTCTCCACGACTGGATTCAC-TCATCTTCTCCGGA 486
|||||||||||||||| || || |||||||||||||||||||| | || || |||||||
Sbjct 403 CCATGATTGGTCCTAACGG-CACCGGTCTCCACGACTGGATTC-CTTCCTCATCTCCGGC 460
Query 487 TGCTCACTGTTCTTTCTCCGGCGTCTCATGTGACGACGATGCTCGTGTTATCTCTCTCAA 546
|||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||
Sbjct 461 GGCTCACTGTTCTTTCTCCGGTGTTTCATGTGACGGCGATGCTCGTGTTATCTCTCTCAA 520
Query 547 CGTCTCCTTCACTCCTTTGTTTGGTACAATCTCACCAGAGATTGGGATGTTGACTCATTT 606
|||||| || ||||||||||||||||| |||||||| |||||||||||||||| || |||
Sbjct 521 CGTCTCGTTTACTCCTTTGTTTGGTACTATCTCACCGGAGATTGGGATGTTGAATCGTTT 580
Query 607 GGTGAATCTAACTTTAGCTGCCAACAACTTCACCGGTGAATTACCATTGGAGATGAAGAG 666
|||||||||||||||||||||||| || ||| |||||| |||||||||||||||||||||
Sbjct 581 GGTGAATCTAACTTTAGCTGCCAATAATTTCTCCGGTGCATTACCATTGGAGATGAAGAG 640
Query 667 TCTAACTTCTCTCAAGGTTTTGAATATCTCCAACAATGGTAACCTTACTGGAA-CATTCC 725
||||||||||||||||||||||||||||||||||||||| ||||||| ||||| | ||||
Sbjct 641 TCTAACTTCTCTCAAGGTTTTGAATATCTCCAACAATGGAAACCTTAATGGAAGC-TTCC 699
Query 726 CTGGAGAGATT-TTAAAAGCTATGGTTGATCTTGAAGTTCTTGACACTTATAACAACAAT 784
||||||||||| || |||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 700 CTGGAGAGATTGTT-AAAGCTATGGTTGATCTTGAAGTTCTTGACGCTTATAACAACGGT 758
Query 785 TTCAACGGTAAGTTACCACCGGAGATGT-CAGAGCTTAAGAAGCTTAAATACCTCTCTTT 843
|||| ||||| ||||||||||||||| | ||||||| ||||| || ||| ||||||| |
Sbjct 759 TTCACCGGTACGTTACCACCGGAGAT-TCCAGAGCTGAAGAAACTCAAACACCTCTCCCT 817
Query 844 CGGTGGAAATTTCTTCAGCGGAGAGATTCCAGAGAGTTATGGAGATATTCAAAGCTTAGA 903
|||||| |||||||||| ||||||||||||||||||||| |||||||| |||||||||||
Sbjct 818 CGGTGGGAATTTCTTCAACGGAGAGATTCCAGAGAGTTACGGAGATATCCAAAGCTTAGA 877
Query 904 GTATCTTGGTCTCAACGGAGCTGGACTCTCCGGTAAATCTCCGGCGTTTCTTTCCCGCCT 963
|||||||||||||||||| |||||| ||||||||||||||||||||||||| || || ||
Sbjct 878 GTATCTTGGTCTCAACGGCGCTGGAATCTCCGGTAAATCTCCGGCGTTTCTATCTCGACT 937
Query 964 CAAGAA-CTTAAGAGAAATGTATATTGGCTACTACAACAGCTACACCGGTGGTGTTCCAC 1022
|||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 938 CAAGAACCTAAAG-GAAATGTATATTGGCTACTACAACAGCTACACCGGTGGTGTTCCAC 996
Query 1023 CGGAGTTCGGTGGTTTAACAAAGCTTGAGATCCTCGACATGGCGAGCTGTACACTCACCG 1082
|||||||||| |||||||||||||||||||| |||||||||||||| ||||| |||||||
Sbjct 997 CGGAGTTCGGCGGTTTAACAAAGCTTGAGATACTCGACATGGCGAGTTGTACTCTCACCG 1056
Query 1083 GAGAGATTCCGACGAGTTTAAGTAACCTGAAACATCTACATACTCTGTTTCTTCACATCA 1142
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1057 GCGAGATTCCGACGAGTTTAAGTAACCTGAAACATTTACATACTCTGTTTCTTCATGTCA 1116
Query 1143 ACAACTTAACCGGTCATATACCACCGGAGCTTTCCGGTTTAGTCAGCTTGAAATCTCTCG 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 ACAACTTAACCGGTCATATACCACCGGAGCTTTCCGGTTTAGTCAGCTTGAAATCTCTCG 1176
Query 1203 ATTTATCAATCAATCAGTTAACCGGAGAAATCCCTCAAAGCTTCATCAATCTCGGAAACA 1262
||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1177 ATTTATCAATCAACCAGTTAACCGGAGAAATTCCTCAAAGCTTCATCGATCTCGGAAACA 1236
Query 1263 TTACTCTAATCAATCTCTTCAGAAACAATCTCTACGGACAAATACCAGA-GGCCATCGGA 1321
| |||||||||||||||||| | |||||||||||||||||||||||||| | |||||||
Sbjct 1237 TCACTCTAATCAATCTCTTCCGGAACAATCTCTACGGACAAATACCAGACTG-CATCGGA 1295
Query 1322 GAATTACCAAAACTCGAAGTCTTCGAAGTATGGGAGAACAATTTCACGTTACAATTACCG 1381
||||||||||| ||| ||||||| ||||| ||||||||||| ||||||||||| ||||||
Sbjct 1296 GAATTACCAAAGCTCCAAGTCTTTGAAGTGTGGGAGAACAACTTCACGTTACAGTTACCG 1355
Query 1382 GCGAATCTTGGCCGGAACGGGAATCTAATAAAGCTTGATGTCTCTGATAATCATCTCACC 1441
|||||||||||||||||||||||||| || ||||| || || ||| ||||||||||||||
Sbjct 1356 GCGAATCTTGGCCGGAACGGGAATCTGATGAAGCTGGACGTATCTTATAATCATCTCACC 1415
Query 1442 GGACTTATCCCCAAGGACTTATGCAGAGGTGAGAAATTAGAGATGTTAATTCTCTCTAAC 1501
||||||||||||| ||| || ||||||||||||||||| |||||||| |||||||||||
Sbjct 1416 GGACTTATCCCCATGGATTTGTGCAGAGGTGAGAAATTGGAGATGTTGATTCTCTCTAAT 1475
Query 1502 AACTTCTTCTTTGGTCCAATTCCAGAAGAGCTTGGTAAATGCAAAT-CCTTAACCAAAAT 1560
||||||||||||||||| |||||||||||||||||||||||||| | ||| || ||||||
Sbjct 1476 AACTTCTTCTTTGGTCCGATTCCAGAAGAGCTTGGTAAATGCAAGTCCCTGAA-CAAAAT 1534
Query 1561 CAGAATCGTTAAGAATCTTCTCAACGGCACTGTTCCGGCGGGGCTTTTCAATCTACCGTT 1620
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1535 CAGAATCGTTAAGAATCTTCTCAACGGAACTATTCCGGCGGGGCTTTTCAATCTACCGTT 1594
Query 1621 AGTTACGATTATCGAACTCACTGATAATTTCTTCTCCGGTGAACTTCCGGTAACGATGTC 1680
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1595 AGTTACGATTATCGAACTCACTGATAATTTCTTCTCCGGTGAACTTCCGGCAACGATGTC 1654
Query 1681 CGGCGATGTTCTCGATCAGATTTACCTCTCTAACAACTGGTTTTCCGGCGAGATTCCACC 1740
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1655 CGGCGATGTTCTCGATCAGATTTACCTCTCAAACAACTGGTTTTCCGGCGAGATTCCACC 1714
Query 1741 TGCGATTGGTAATTTCCCCAATCTACAGACTCTATTCTTAGATCGGAACCGATTTCGCGG 1800
||| || ||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1715 TGCAATCGGTAATTTCCCCAATTTACAGACTCTGTTCTTAGATCGGAACCGATTTCGCGG 1774
Query 1801 CAACATT-CCGAGAGAAATCTTCGAATTGAAGCATTTATCGAGGATCAACACAAGTGCGA 1859
|| || |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1775 GAA-TTTACCGAGAGAAATCTTCGAATTGAAGCATTTATCGAAGATCAACACAAGTGCGA 1833
Query 1860 ACAACATCACCGGCGGTATTCCAGATTCAATCTCTCGCTGCTCAACTTTAATCTCCGTCG 1919
||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1834 ACAACATCACCGGCGCTATTCCAGATTCAATCTCTCGCTGCACTACTTTAATCTCCGTCG 1893
Query 1920 ATCTCAGCCGTAACCGAATCAACGGAGAAATCCCTAAAGGGATCAACAACGTGAAAAACT 1979
||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||
Sbjct 1894 ATCTCAGCCGTAACCGAATCACCGGAGAAATCCCTAAAGATATCAACAACGTGATTAACC 1953
Query 1980 TAGGAACTCTAAATATCTCCGGTAATCAATTAACCGGTTCAATCCCTACCGGAATCGGAA 2039
|||||||||| ||| ||||||| |||||| | |||||||||||||||||| |||||||||
Sbjct 1954 TAGGAACTCTGAATCTCTCCGGCAATCAACTCACCGGTTCAATCCCTACCAGAATCGGAA 2013
Query 2040 ACATGACGAGTTTAACAACTCTCGATCTCTCTTTCAACGATCTCTCCGGTAGAGTACCAC 2099
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2014 ACATGACGAGTTTAACAACTCTCGATCTCTCTTTCAACGATCTCTCCGGAAGAGTACCAC 2073
Query 2100 TCGGTGGTCAATTCTTGGTGTTCAACGAAACTTCCTTCGCCGGAAACACTTACCTCTGTC 2159
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2074 TCGGTGGTCAATTCATGGTGTTCAACGAAACTTCCTTCGCTGGAAACACTTACCTCTGTC 2133
Query 2160 TCCCTCACCGTGTCTCTTGTCCAACACGGCCAGGACAAACCTCCGATCACAATCACACGG 2219
|||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2134 TCCCTCACCGCGTCTCATGTCCAACACGGCCAGGACAAACCTCCGATCACAACCACACGG 2193
Query 2220 CGTTGTTCTCACCGTCAAGGATCGTAATCACGGTTATCGCAGCGATCACCGGTTTGATCC 2279
|||| ||||||||||| |||||||||||||||||||||||||||||||| | |||||||
Sbjct 2194 CGTTATTCTCACCGTCGAGGATCGTAATCACGGTTATCGCAGCGATCACAGCTTTGATCT 2253
Query 2280 TAATCAGTGTAGCGATTCGTCAGATGAATAAGAAGAAGAACCAGAAATCTCTCGCCTGGA 2339
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2254 TAATCAGTGTAGCGATTCGTCAGATGAAGAAGAAGAAGAACCAGAAATCTCTCGCCTGGA 2313
Query 2340 AACTAACCGCCTTCCAGAAACTAGATTTCAAATCTGAAGACGTTCTCGAGTGTCTTAAAG 2399
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2314 AACTAACCGCCTTCCAGAAACTAGATTTCAAATCCGAAGACGTTCTCGAGTGTCTTAAAG 2373
Query 2400 AAGAGAACATAATCGGTAAAGGCGGAGCTGGAATTGTCTACCGTGGATCAATGCCAAACA 2459
|||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 2374 AAGAGAACATAATCGGCAAAGGCGGAGCTGGAATCGTCTACCGTGGATCCATGCCAAACA 2433
Query 2460 ACGTAGACGTCGCGATTAAACGACTCGTTGGCCGTGGGACCGGGAGGAGCGATCATGGAT 2519
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2434 ACGTAGACGTCGCGATCAAACGACTCGTTGGCCGTGGAACCGGGAGGAGCGATCATGGAT 2493
Query 2520 TCACGGCGGAGATTCAAACTTTGGGGAGAATCCGCCACCGTCACATAGTGAGACTTCTTG 2579
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2494 TCACGGCGGAGATTCAAACTTTGGGAAGAATCCGCCACCGTCACATAGTGAGACTTCTTG 2553
Query 2580 GTTACGTAGCGAACAAGGATACGAATCTCCTTCTTTATGAGTACATGCCTAATGGAAGCC 2639
|||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct 2554 GTTACGTAGCGAACAAGGATACGAATCTTCTTCTCTATGAGTACATGCCTAACGGAAGCC 2613
Query 2640 TTGGAGAGCTTTTGCATGGATCTAAAGGTGGTCATCTTCAATGGGAGACGAGACATAGAG 2699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2614 TTGGAGAGCTTTTGCATGGATCTAAAGGTGGTCATCTTCAATGGGAGACGAGACATAGAG 2673
Query 2700 TAGCCGTGGAAGCTGCAAAGGGCTTGTGTTATCTTCACCATGATTGTTCACCATTGATCT 2759
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 2674 TAGCCGTGGAAGCTGCAAAGGGCTTGTGTTATCTTCATCATGACTGTTCACCATTGATCT 2733
Query 2760 TGCATAGAGATGTTAAGTCCAATAACATTCTTTTGGACTCTGATTTTGAAGCCCATGTTG 2819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2734 TGCATAGAGATGTTAAGTCCAATAACATTCTTTTGGACTCTGATTTTGAAGCCCATGTTG 2793
Query 2820 CTGATTTTGGGCTTGCTAAGTTCTTAGTTGATGGTGCTGCTTCTGAGTGTATGTCTTCAA 2879
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 2794 CTGATTTTGGGCTTGCTAAGTTCTTAGTGGATGGTGCTGCTTCTGAGTGTATGTCTTCTA 2853
Query 2880 TTGCTGGCTCTTATGGATACATCGCCCCAGAGTATGCATATACCTTGAAAGTGGACGAGA 2939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2854 TTGCTGGCTCTTATGGATACATCGCCCCAGAGTATGCATATACCTTGAAAGTGGACGAGA 2913
Query 2940 AGAGTGATGTGTATAGTTTCGGAGTGGTTTTGTTGGAGTTAATAGCTGGGAAGAAACCTG 2999
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2914 AGAGTGATGTGTATAGTTTCGGAGTGGTTTTGTTGGAGTTAATCGCTGGGAAGAAACCTG 2973
Query 3000 TTGGTGAATTTGGAGAAGGAGTGGATATAGTTAGGTGGGTGAGGAACACGGAAGAGGAGA 3059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2974 TTGGTGAATTTGGAGAAGGAGTGGATATAGTTAGGTGGGTGAGGAACACGGAAGAGGAGA 3033
Query 3060 TAACTCAGCCATCGGATGCTGCTATTGTTGTTGCGATTGTTGACCCGAGGTTGACTGGTT 3119
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 3034 TAACTCAGCCGTCGGATGCTGCTATTGTTGTTGCGATCGTTGACCCGAGGTTGACTGGTT 3093
Query 3120 ACCCGTTGACAAGTGTGATTCATGTGTTCAAGATCGCAATGATGTGTGTGGAGGAAGAAG 3179
||||| |||| ||||||||||||||||||||||| || ||||||||||||||||| ||||
Sbjct 3094 ACCCGCTGACCAGTGTGATTCATGTGTTCAAGATAGCGATGATGTGTGTGGAGGATGAAG 3153
Query 3180 CCGCGGCAAGGCCTACGATGAGGGAAGTTGTGCACATGCTCACTAACCCTCCTAAATCCG 3239
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 3154 CCGCGGCAAGGCCTACAATGAGGGAAGTTGTGCACATGCTCACTAACCCTCCTAAATCTG 3213
Query 3240 TGGCGAACTTGATCGCGTTCTGACCCAAGCAA--GATAAATATGAAAATAAGATGCGAAA 3297
|||| ||| |||||||||||||||| |||||| |||||| |||||||||||||| | ||
Sbjct 3214 TGGCTAACATGATCGCGTTCTGACCAAAGCAAAAGATAAA-ATGAAAATAAGATGTGTAA 3272
Query 3298 TGTGGTGATCATTTTTT-GGGTGTTCTTATTTATGGTTTCTAATACTTTCGGGTTTGTAT 3356
||||||||| ||||||| ||||| |||||||||||||||| |||||||||||||| ||||
Sbjct 3273 TGTGGTGATAATTTTTTTGGGTGCTCTTATTTATGGTTTCAAATACTTTCGGGTT-GTAT 3331
Query 3357 ATTTGTTGTGTTTCAATTTGTATATTACCTCTTT 3390
||||||||||||||||||||||||||||||||||
Sbjct 3332 ATTTGTTGTGTTTCAATTTGTATATTACCTCTTT 3365
> Ahg347425 jgi|Araly1|347425|fgenesh1_pg.C_scaffold_5000817
Length=1389
Score = 346 bits (187), Expect = 7e-94
Identities = 223/240 (93%), Gaps = 4/240 (2%)
Strand=Plus/Plus
Query 1634 GAACTCACTGATAATTTCTTCTCCGGTGAACTTCCGGTAACGATGTCCGGCGATGTTCTC 1693
|||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||
Sbjct 261 GAACTCACTGATAATTTCTTCTCCGGTGAACTTCCGACAACGAT--CCGTCGATGTTCTC 318
Query 1694 GATCAGATTTACCTCTCTAACAACTGGTTTTCCGGCGAGATTCCACCTGCGATTGGTAAT 1753
||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct 319 GATCAGATTTACCTCTCAAACAACTGGTTTTCTGGCGAGATTCCACCTGCGATCGGTAAT 378
Query 1754 TTCCCCAATCTACAGACTCTATTCTTAGATCGGAACCGATTTCGCGGCAACATT-CCGAG 1812
||||||||| |||||||||| |||||||||||||||||||||||||| || || |||||
Sbjct 379 TTCCCCAATTTACAGACTCTGTTCTTAGATCGGAACCGATTTCGCGGGAAT-TTACCGAG 437
Query 1813 AGAAATCTTCGAATTGAAGCATTTATCGAGGATCAACACAAGTGCGAACAACATCACCGG 1872
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 438 GGAAATCTTCGAATTGAAGCATTTATCGAAGATCAACACAAGTGCGAACAATATCACCGG 497
Score = 180 bits (97), Expect = 7e-44
Identities = 115/123 (93%), Gaps = 3/123 (2%)
Strand=Plus/Plus
Query 2006 CAAT-TAACCGGTTCAATCCCTACCGGAATCGGAAACATGACGAGTTTAACAACTCTCGA 2064
|||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 486 CAATATCACCGGTTCAATCCCTACCAGAATCGGAAACATGACGAGTTTAACAACTCTCGA 545
Query 2065 TCTCTCTTTCAACGATCTCTCCGGTAGAGTACCACTCGGTGGTCAATTCTTGGTGTTCAA 2124
|||||||||||| ||||||||||| |||||||||||||||||||||||| |||| ||||
Sbjct 546 TCTCTCTTTCAAAGATCTCTCCGGAAGAGTACCACTCGGTGGTCAATTCATGGT-TTCA- 603
Query 2125 CGA 2127
|||
Sbjct 604 CGA 606
> Ahg344577 jgi|Araly1|344577|fgenesh1_pg.C_scaffold_4000919
Length=822
Score = 346 bits (187), Expect = 7e-94
Identities = 223/240 (93%), Gaps = 4/240 (2%)
Strand=Plus/Plus
Query 1634 GAACTCACTGATAATTTCTTCTCCGGTGAACTTCCGGTAACGATGTCCGGCGATGTTCTC 1693
|||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||
Sbjct 261 GAACTCACTGATAATTTCTTCTCCGGTGAACTTCCGACAACGAT--CCGTCGATGTTCTC 318
Query 1694 GATCAGATTTACCTCTCTAACAACTGGTTTTCCGGCGAGATTCCACCTGCGATTGGTAAT 1753
||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct 319 GATCAGATTTACCTCTCAAACAACTGGTTTTCTGGCGAGATTCCACCTGCGATCGGTAAT 378
Query 1754 TTCCCCAATCTACAGACTCTATTCTTAGATCGGAACCGATTTCGCGGCAACATT-CCGAG 1812
||||||||| |||||||||| |||||||||||||||||||||||||| || || |||||
Sbjct 379 TTCCCCAATTTACAGACTCTGTTCTTAGATCGGAACCGATTTCGCGGGAAT-TTACCGAG 437
Query 1813 AGAAATCTTCGAATTGAAGCATTTATCGAGGATCAACACAAGTGCGAACAACATCACCGG 1872
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 438 GGAAATCTTCGAATTGAAGCATTTATCGAAGATCAACACAAGTGCGAACAATATCACCGG 497
Score = 180 bits (97), Expect = 7e-44
Identities = 115/123 (93%), Gaps = 3/123 (2%)
Strand=Plus/Plus
Query 2006 CAAT-TAACCGGTTCAATCCCTACCGGAATCGGAAACATGACGAGTTTAACAACTCTCGA 2064
|||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 486 CAATATCACCGGTTCAATCCCTACCAGAATCGGAAACATGACGAGTTTAACAACTCTCGA 545
Query 2065 TCTCTCTTTCAACGATCTCTCCGGTAGAGTACCACTCGGTGGTCAATTCTTGGTGTTCAA 2124
|||||||||||| ||||||||||| |||||||||||||||||||||||| |||| ||||
Sbjct 546 TCTCTCTTTCAAAGATCTCTCCGGAAGAGTACCACTCGGTGGTCAATTCATGGT-TTCA- 603
Query 2125 CGA 2127
|||
Sbjct 604 CGA 606
> Ahg938283 jgi|Araly1|938283|scaffold_502474.1
Length=400
Score = 335 bits (181), Expect = 1e-90
Identities = 206/218 (94%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 1656 CCGGTGAACTTCCGGTAACGATGTCCGGCGATGTTCTCGATCAGATTTACCTCTCTAACA 1715
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 CCGGTGAACTTCCGACAACGATGTCCGGCGATGTTCTCGATCAGATTTACCTCTCAAACA 60
Query 1716 ACTGGTTTTCCGGCGAGATTCCACCTGCGATTGGTAATTTCCCCAATCTACAGACTCTAT 1775
||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
Sbjct 61 ACTGGTTTTCCGGCGAGATTCCACCTGCGATCGGTAATTTCCCCAATTTACAGACTCTGT 120
Query 1776 TCTTAGATCGGAACCGATTTCGCGGCAACATT-CCGAGAGAAATCTTCGAATTGAAGCAT 1834
||||||||||||||||||||||||| || || ||||| |||||||||||||||||||||
Sbjct 121 TCTTAGATCGGAACCGATTTCGCGGGAAT-TTACCGAGGGAAATCTTCGAATTGAAGCAT 179
Query 1835 TTATCGAGGATCAACACAAGTGCGAACAACATCACCGG 1872
||||||| ||||||||||||||||||||||||||||||
Sbjct 180 TTATCGAAGATCAACACAAGTGCGAACAACATCACCGG 217
Score = 174 bits (94), Expect = 3e-42
Identities = 109/116 (94%), Gaps = 2/116 (2%)
Strand=Plus/Plus
Query 2012 ACCGGTTCAATCCCTACCGGAATCGGAAACATGACGAGTTTAACAACTCTCGATCTCTCT 2071
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 213 ACCGGTTCAATCCCTACCAGAATCGGAAACATGACGAGTTTAACAACTCTCTATCTCTCT 272
Query 2072 TTCAACGATCTCTCCGGTAGAGTACCACTCGGTGGTCAATTCTTGGTGTTCAACGA 2127
||||| ||||||||||| |||||||||||||||||||||||| |||| |||| |||
Sbjct 273 TTCAAAGATCTCTCCGGAAGAGTACCACTCGGTGGTCAATTCATGGT-TTCA-CGA 326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129547978492
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5