BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75840.1
Length=1273
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926972 jgi|Araly1|926972|scaffold_202533.1 1066 0.0
Ahg472235 jgi|Araly1|472235|fgenesh2_kg.1__2189__AT1G20090.1 806 0.0
> Ahg926972 jgi|Araly1|926972|scaffold_202533.1
Length=632
Score = 1066 bits (577), Expect = 0.0
Identities = 612/629 (97%), Gaps = 1/629 (0%)
Strand=Plus/Plus
Query 238 TTTGTG-AATTTGCTGCGGAGATGAGTGCTTCGAGGTTTATAAAGTGTGTCACCGTCGGC 296
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTGTGAAATTTGCGGCGGAGATGAGTGCTTCGAGGTTTATAAAGTGTGTCACCGTCGGC 60
Query 297 GATGGTGCCGTCGGAAAAACTTGTATGCTGATTTCTTACACAAGCAACACTTTCCCTACG 356
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 GATGGTGCCGTCGGAAAAACCTGTATGCTGATTTCTTACACAAGCAACACTTTCCCTACG 120
Query 357 GACTATGTTCCAACTGTTTTCGACAACTTCAGTGCTAATGTGGTTGTAGATGGGAACACG 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GACTATGTTCCAACTGTTTTCGACAACTTCAGTGCTAATGTGGTTGTAGATGGGAACACG 180
Query 417 GTGAATCTTGGATTGTGGGATACAGCTGGTCAAGAAGACTATAACAGGTTAAGACCGTTG 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTGAATCTTGGATTGTGGGATACAGCTGGTCAAGAAGACTATAACAGGTTAAGACCGTTG 240
Query 477 AGTTACCGTGGTGCCGATGTCTTCATTCTTGCATTCTCGCTTATTAGCAAAGCTAGCTAC 536
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 241 AGTTACCGTGGTGCCGATGTCTTCATTCTTGCATTCTCCCTTATTAGCAAGGCTAGCTAT 300
Query 537 GAGAATGTAGCCAAGAAGTGGATTCCTGAGCTTAGGCATTATGCCCCTGGTGTTCCTATA 596
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 GAGAATGTAGCCAAGAAGTGGATTCCTGAGCTCAGGCATTATGCCCCTGGTGTTCCTATA 360
Query 597 ATCCTCGTTGGAACGAAACTCGATCTTCGAGATGACAAGCAATTCTTCATAGACCATCCT 656
||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 ATCCTTGTTGGAACAAAACTCGATCTTCGAGATGACAAGCAGTTCTTCATAGACCATCCT 420
Query 657 GGTGCAGTGCCTATTACTACAAACCAGGGAGAGGAACTAAAGAAACTGATAGGATCACCA 716
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 421 GGTGCAGTGCCGATTACTACAAACCAGGGAGAGGAATTAAAGAAACTGATAGGATCTCCA 480
Query 717 ATCTACATTGAATGTAGTTCAAAGACTCAGCAGAATGTGAAAGCAGTCTTTGACGCAGCC 776
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 ATCTACATTGAATGTAGTTCAAAGACGCAGCAGAATGTGAAAGCAGTCTTTGACGCAGCC 540
Query 777 ATAAAAGTGGTGCTTCAGCCACCGAAACAGAAGAAGAAGAAAAAGAACAAGAACCGCTGC 836
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 541 ATAAAAGTGGTGCTTCAGCCACCGAAACAGAAGAAGAAGAAAAAGAATAAGAACCGCTGT 600
Query 837 GTGTTCTTGTGATCGAACATCTCTTAAAA 865
|||||||||||||||||||||| ||||||
Sbjct 601 GTGTTCTTGTGATCGAACATCTTTTAAAA 629
> Ahg472235 jgi|Araly1|472235|fgenesh2_kg.1__2189__AT1G20090.1
Length=1088
Score = 806 bits (436), Expect = 0.0
Identities = 564/626 (90%), Gaps = 8/626 (1%)
Strand=Plus/Plus
Query 228 tttttttGAGTTTGT-GAAT-TTGCTGCGGAGATGAGTGCTTCGAGGTTTATAAAGTGTG 285
|||||||| ||| | | || |||| |||||||||||||| || ||||| ||||||||||
Sbjct 181 TTTTTTTG-TTTTTTCG-ATCTTGCGGCGGAGATGAGTGCGTCAAGGTTCATAAAGTGTG 238
Query 286 TCACCGTCGGCGATGGTGCCGTCGGAAAAACTTGTATGCTGATTTCTTACACAAGCAACA 345
| |||||||| |||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 239 TGACCGTCGGAGATGGTGCCGTCGGAAAAACCTGCATGCTGATTTCTTACACAAGCAATA 298
Query 346 CTTTCCCTACGGACTATGTTCCAACTGTTTTCGACAACTTCAGTGCTAATGTGGTTGTAG 405
|||||||||| || ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 299 CTTTCCCTACAGATTATGTGCCAACTGTTTTCGACAACTTCAGTGCTAATGTGGTTGTTG 358
Query 406 ATGGGAACACGGTGAATCTTGGATTGTGGGATACAGCTGGTCAAGAAGACTATAACAGGT 465
|||||||||| || ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 359 ATGGGAACACTGTCAATCTTGGATTGTGGGATACAGCAGGTCAAGAAGACTACAACAGGT 418
Query 466 TAAGACCGT-TGAGTTACCGTGGTGCCGATGTCTTCATTCTTGCATTCTCGCTTATTAGC 524
|| |||| | ||||||| |||||||||||||| ||||||||||| ||||| || || |||
Sbjct 419 TACGACC-TCTGAGTTATCGTGGTGCCGATGTTTTCATTCTTGCTTTCTCTCTCATCAGC 477
Query 525 AAAGCTAGCTACGAGAATGTAGCCAAGAAGTGGATTCCTGAGCTTAGGCATTATGCCCCT 584
|| |||||||| |||||| | ||||||||||||||||||||||| ||||||||||| |||
Sbjct 478 AAGGCTAGCTATGAGAATATTGCCAAGAAGTGGATTCCTGAGCTCAGGCATTATGCTCCT 537
Query 585 GGTGTTCCTATAATCCTCGTTGGAACGAAACTCGATCTTCGAGATGACAAGCAATTCTTC 644
|||||||| || |||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 538 GGTGTTCCCATTATCCTCGTGGGAACAAAACTCGATCTTCGAGATGACAAGCAATTCTTC 597
Query 645 ATAGACCATCCTGGTGCAGTGCCTATTACTACAAACCAGGGAGAGGAACTAAAGAAACTG 704
|| || ||||||||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 598 ATTGATCATCCTGGTGCAGTGCCAATTACAACAAACCAGGGAGAGGAACTGAAGAAACTG 657
Query 705 ATAGGATCACCAATCTACATTGAATGTAGTTCAAAGACTCAGCAGAATGTGAAAGCAGTC 764
|| ||||| | ||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 658 ATTGGATCTGCGGTCTACATTGAATGTAGTTCAAAGACACAGCAGAACGTGAAGGCAGTG 717
Query 765 TTTGACGCAGCCATAAAAGTGGTGCTTCAGCCACCGAAA-CAGAAGAAGAAGAAAAAGAA 823
||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 718 TTTGATGCAGCCATAAAAGTGGTGCTTCAGCCACC-AAAGCAGAAGAAGAAGAAAAAGAA 776
Query 824 CAAGAACCGCTGCGTGTTCTTGTGAT 849
|||||||| |||| |||||||||||
Sbjct 777 TAAGAACCGTTGCGCGTTCTTGTGAT 802
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47577400416
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5