BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75860.1
Length=1194
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476734 jgi|Araly1|476734|fgenesh2_kg.2__1864__AT1G75860.1 1328 0.0
> Ahg476734 jgi|Araly1|476734|fgenesh2_kg.2__1864__AT1G75860.1
Length=1104
Score = 1328 bits (719), Expect = 0.0
Identities = 963/1076 (89%), Gaps = 35/1076 (3%)
Strand=Plus/Plus
Query 127 GTTGCTTGAATCTGAAGCTAATCTTGGGTTAATTGGATTG-TTAG-AATCGAGACCTAAA 184
||||||||||||||||||||| |||||||||||| ||||| | | | | | ||| |
Sbjct 53 GTTGCTTGAATCTGAAGCTAACCTTGGGTTAATTCGATTGCATCGCCTTTG-G-CCTTTA 110
Query 185 TCCTTCGATTGGATCAGAGAAAATATGTCGCGCGTTCTCACTTGCCCACCGCTTGTGTTT 244
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 111 TCCTCCGATTGGATCTGAGAAAATATGTCGCGCGTTCTCACTTGCCCACCGCTTGTGTTT 170
Query 245 GCAAGAAACCACGTTG-GCGTTCAAAACTTGGTCGAATCGACTAAGCTTAAAAGAATCAC 303
||||| ||||| | | ||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 171 GCAAGGAACCAAGC-GAGCGTTCATAACTTGGTCGAATCGACTAAGCTTGAAAGAATCAC 229
Query 304 ACTTGATTCAAAAAAGGCGCACCGGATagagaagaaggaaaagaaggagaagagaaaaga 363
||||||||| ||||||||||||||||||||||||||||| |||| |||| ||||||||
Sbjct 230 ACTTGATTCGAAAAAGGCGCACCGGATAGAGAAGAAGGA---GAAG-AGAATAGAAAAGA 285
Query 364 aaagaaagaaaCTAAGCGTGAGAAATCGCATAAACATTCGATTAAAGCAACTGATAATCA 423
| | ||| |||||| | |||||| |||||||||||||||||||| ||||||||||
Sbjct 286 TA-G---GAA-CTAAGCTTCCGAAATCACATAAACATTCGATTAAAGCTGCTGATAATCA 340
Query 424 TCACAAGCTAATATTTCTTCCTTCCAAGAAAGTGTCAGATGAGTCTGACTCA-CTAGAGA 482
|||||||||| |||||||||| ||||||||||| ||||||||||||| | || || ||||
Sbjct 341 TCACAAGCTAGTATTTCTTCCCTCCAAGAAAGTCTCAGATGAGTCTGTC-CAACTTGAGA 399
Query 483 AGAGTGGTTTGACAGATGAGCTTGAGGAACCTCAAAAACACCTTGGATATTTGTCTGATG 542
|||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||
Sbjct 400 AGAGTGGTTTGACAGAGGAGCTCGAGGAACCTCAAAACCATCTTGGATATTTGTCTGATG 459
Query 543 GAAGTCAGAATAGTAAGAAGAGGATTAGAGATGATTCTCCTCCGGCTGTTGAAAGTCTCA 602
|||||||||||||||||||||||| |||||| | ||||||||||| ||||| |||||||
Sbjct 460 GAAGTCAGAATAGTAAGAAGAGGAATAGAGACAACTCTCCTCCGGCAGTTGACAGTCTCA 519
Query 603 TCAAAGCTGCACCTGTAGCAGGTAAACCTCTACGGATTAGAATGGTCTTCAAAAAACCAA 662
|||||||| ||||||||||||||||||||||||||||| | || |||||||||||||||
Sbjct 520 TCAAAGCTACACCTGTAGCAGGTAAACCTCTACGGATTCGGTTGATCTTCAAAAAACCAA 579
Query 663 AGGAGGAAGTTCCTACT-CTGCCTAGAGAGGCTGTTGTTTGCTCCACTACAGTTGCAAAG 721
| |||||||||||| | ||||||||||||| | |||||||||||||||||| |||||||
Sbjct 580 AAGAGGAAGTTCCTG-TACTGCCTAGAGAGGGTCTTGTTTGCTCCACTACAGCTGCAAAG 638
Query 722 TCGCTCAGTCACCAAGATGTCATAACAAGTTCTATCTCAAGTTCAAAAACATCCGAGCTT 781
|| || ||||||||||||||||||||||||||||| ||| | || | | ||||||
Sbjct 639 TCTCTAAGTCACCAAGATGTCATAACAAGTTCTATATCA-G--CAT---C-T--GAGCTT 689
Query 782 GAAAAGAATCTGCCGTCAACATCAATAGC-G-G-CAATAGATGAAACAAAGAAGAGAAAG 838
||| ||||||||||||||||||| |||| | | ||||||||||||||||||||||||||
Sbjct 690 GAAGAGAATCTGCCGTCAACATCTGTAGCAGCGGCAATAGATGAAACAAAGAAGAGAAAG 749
Query 839 AAACACAGATCTAGCAAAGAAGATCAATACAATGCATTGTTTGATGGTTGGACTCC-TCC 897
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 750 AAACACAGACCTAGCAAAGAAGATCAATACAATGCATTGTTTGATGGTTGGACTCCGTC- 808
Query 898 TTCCATGTGTATTGCTGATGCATCTTCAAATGACAATGGTGATTATTGGCTATTTGGGAA 957
|||||| ||| |||||||| | ||||||||||||||| ||||| ||||||||||||||||
Sbjct 809 TTCCATTTGTTTTGCTGATTCTTCTTCAAATGACAATAGTGATGATTGGCTATTTGGGAA 868
Query 958 CAAGACGCAAGAGGTGCTTAAGCCCAAAGCAGCAGTCAAGGTTGATGATGACACGATGAT 1017
||||||||||||| |||||||||||||||||||||||||| ||| ||||||| ||||||
Sbjct 869 CAAGACGCAAGAGATGCTTAAGCCCAAAGCAGCAGTCAAGATTGCCGATGACATGATGAT 928
Query 1018 GAGACCGGGAGATTCATCTTGGCCTAGAGCTCAATTTTTGTCTGAAGTTGGGATTTATTC 1077
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 929 TAAACCGGGAGATTCATCTTGGCATAGAGCTCAATTTTTGTCTGAAGTTGGGATTTATTC 988
Query 1078 TTTACCTTATACTGTCCCGTTCTAAT-GCTCGATTCTTTTTGTTCTAGCTTTAGACTTA- 1135
|||||| || || ||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 989 TTTACCGTACACCGTCCCGTTCTAATTGCTCGATTCTTTTTGTTCTAGCTTTAGGCTTAA 1048
Query 1136 GCTTGTACAGTGTTTGACTGTTTGTAACAACAATTCTAATCTAACCCGATTTTGAT 1191
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1049 GCTTGTACAGTGTTTGACTTTTTGTAACAACAATTCTAATCTAACCCAATTTTGAT 1104
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44565689973
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5