BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75870.1
Length=1080
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316513 jgi|Araly1|316513|fgenesh1_pm.C_scaffold_2001546 676 0.0
> Ahg316513 jgi|Araly1|316513|fgenesh1_pm.C_scaffold_2001546
Length=492
Score = 676 bits (366), Expect = 0.0
Identities = 457/500 (91%), Gaps = 10/500 (2%)
Strand=Plus/Plus
Query 304 ATGCAAGAAACCCAAACGAAGTTGTCTCTGAGTGTAACACCAGTTAATGCAAATGCCCCA 363
||||||||| ||||||||||||||||||||||||| |||||||| |||| || ||
Sbjct 1 ATGCAAGAACCCCAAACGAAGTTGTCTCTGAGTGTTACACCAGTCAATGGAACTG----- 55
Query 364 CTCCCACAGAATCCCGCAATTCCTCTAGGCTTGATTGCTCCATATCATCAACAAGCAAAA 423
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 56 -TCCCACAGAATCCCGCGATTCCTCTAGGCTTGATTGCTCCATATCATCAACAAGCAAAT 114
Query 424 GACATTAACCATATGTTACAGAACCAGATGACAAGAGAATTGTATGGTCAATTAAGAAGT 483
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 115 GACATTAACCATATGTTACAGAACCAGATGACAAGAGAATTGTATGGTCAACTAAGGAGT 174
Query 484 CTCGAGGAGAGAGCCATCTTTTGTGTGAG-GGTAAAAGACAAAGTCATCGAAGATATGAA 542
||||||||||||||| |||| |||||||| || |||||||||| |||||||||| |||||
Sbjct 175 CTCGAGGAGAGAGCCGTCTTGTGTGTGAGAGG-AAAAGACAAAATCATCGAAGAAATGAA 233
Query 543 GAAACAATGTGGAGAAATGGAGATTCGTACGAGAAAAGCGTTAGCAGAAGCAGAATTTTG 602
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 234 GAAACAATGTGGCGAAATGGAGATTCGTACGAGAAAAGCGTTAGCAGAAGCCGAATTTTG 293
Query 603 GAGGAAGATGACGAATGAGAAAACGGACTTGTGTAGAGACCTTGCGGGGAGACTTATTGA 662
|||||||||||||||| |||||||||||||||||| ||| ||||| ||||| || | ||
Sbjct 294 GAGGAAGATGACGAATCAGAAAACGGACTTGTGTAAAGAACTTGCCGGGAGGCTCCTGGA 353
Query 663 AATGAAAAAGAGAGAAAGGGCGACGAGACGACTGGGGGTGAGGGAA-ATGGCAGAGAAGG 721
||| ||||||| ||||| | ||||||||||||| |||| |||| || ||||||||| |||
Sbjct 354 AATTAAAAAGAAAGAAAAGTCGACGAGACGACTTGGGGAGAGG-AATATGGCAGAGGAGG 412
Query 722 CTGAGTCGTCTACTGGTGATAATGGTGACGATGTTGTAGACACAGCAAGAACCCGTTTGT 781
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 413 CTGAGTCGTCTACTGGTGATAATGGTGACGATGTTGTACACACAGCAAGAACCCGTTTAT 472
Query 782 GCAAACGACGCCGTCTTTGA 801
||||||| ||||||||||||
Sbjct 473 GCAAACGTCGCCGTCTTTGA 492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40219677435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5