BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75880.1
Length=1409
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316514 jgi|Araly1|316514|fgenesh1_pm.C_scaffold_2001547 1520 0.0
> Ahg316514 jgi|Araly1|316514|fgenesh1_pm.C_scaffold_2001547
Length=2022
Score = 1520 bits (823), Expect = 0.0
Identities = 955/1018 (94%), Gaps = 11/1018 (1%)
Strand=Plus/Plus
Query 116 ATGGAACGATGTCGTTCTGGTCATCATCGCATCATTTCTTA---TTATCTCTCTTCTTCG 172
||||||||| || |||||||||||| |||||||| |||||| || || ||||||||||
Sbjct 1 ATGGAACGACGTGGTTCTGGTCATCTTCGCATCAATTCTTATTTTTGTCCCTCTTCTTCG 60
Query 173 TTGATACTATTTTGGTGTATTTTCGTTCTCGTGCTGTTATCTACGACAAGTACTACAAAT 232
||||| |||||| ||| |||| ||||||||||||||| |||||| | |||||||||
Sbjct 61 ACGATACCGTTTTGGCGTACTTTCTTTCTCGTGCTGTTATTTACGAC-A--ACTACAAAT 117
Query 233 GCTTTAGTGAAAATCCCGAAAAACACGACCGTTCCGGCGGTAATAGTGTTCGGTGATTCA 292
||||||||||||||||| |||||||||||||| ||||| ||||||||||| || ||||||
Sbjct 118 GCTTTAGTGAAAATCCCAAAAAACACGACCGTCCCGGCAGTAATAGTGTTTGGAGATTCA 177
Query 293 ATTGTCGATGCCGGGAATAACGACGACATGATAACAGAAGCTAGATGCGATTATGCTCCC 352
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 ATTGTCGATGCCGGAAATAACGACGACATGATAACAGAAGCTAGATGCGATTATGCTCCC 237
Query 353 TACGGCATTGATTTTGACGGTGGAGTTGCTACGGGAAGATTCTCTAATGGCAAAGTCCCT 412
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 238 TACGGCATTGATTTTGACGGTGGAGTTGCTACCGGAAGATTCTCCAATGGCAAAGTCCCC 297
Query 413 GGTGATATTGTAGCGGAAGAGCTAGGGATTAAACCCAATATACCGGCATATCGAAATCCG 472
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 298 GGTGATATTGTAGCGGAAGAGCTAGGGATTAAACCCAATATACCGGCATACCGAGATCCA 357
Query 473 AATTTAAAACCAGAAGAGCTCTTAACCGGTGTAACATTTGCTTCTGGTGGTGCTGGTTAT 532
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 358 AATTTAAAACCAGAAGATCTCTTAACCGGTGTAACATTTGCTTCTGGTGGCGCTGGTTAC 417
Query 533 GTTCCTTTGACAACCAAAATAGCGGTAGGAGGAATACCTTTACCACAGCAATTGATATAT 592
||||||||||| ||||||||||| | |||||||||||||||||||| ||||||| ||||
Sbjct 418 GTTCCTTTGACGACCAAAATAGC-G--GGAGGAATACCTTTACCACAACAATTGAAATAT 474
Query 593 TTTGAGGAATATATAGAGAAATTGAAGCAAATGGTTGGAGAA-AAGAGGACAAAGTTCAT 651
||||| ||||||||| ||||||||||| ||||||||||||| || ||||||||||||||
Sbjct 475 TTTGAAGAATATATAAAGAAATTGAAGGGAATGGTTGGAGAAGAA-AGGACAAAGTTCAT 533
Query 652 AATCAAGAATAGCTTGTTCGTTGTTATATGTGGTAGTAACGATATCGCCAACGACTTCTT 711
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 534 AATCAAGAATAGCTTGTTCGTTGTTATATGTGGTAGTAACGATATCGTCAACGACTTCTT 593
Query 712 TACTCTCCCCCCGGTCCGGCTACACTACACCGTCGCTTCTTTCACCGCTCTTATGGCCGA 771
| ||||||| ||||| | ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 594 TGCTCTCCCTCCGGTTCAGCTCCACTACACCGTCGCTTCTTTCACCGCTCTTATGGCCGA 653
Query 772 CAATGCTCGTTCTTTTGCTCAGACACTCTATGGATATGGAGCAAGAAGAATACTTGTATT 831
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 654 CAATGCTCGCTCTTTTGCTCAGACGCTCTATGGATATGGAGCAAGAAGAATACTTGTATT 713
Query 832 TGGTGCACCACCAATAGGATGTGTTCCTTCGCAGAGAACCGTAGCAGGAGGACCTACAAG 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TGGTGCACCACCAATAGGATGTGTTCCTTCGCAGAGAACCGTAGCAGGAGGACCTACAAG 773
Query 892 AGATTGTGTTGCTAGGTTTAATGATGCAGCAAAACTTTTCAATACTAAGCTCTCTGCAAA 951
||| |||||||||||||| ||||||||| ||||||||||||||||||| |||||||| ||
Sbjct 774 AGAATGTGTTGCTAGGTTCAATGATGCATCAAAACTTTTCAATACTAAACTCTCTGCTAA 833
Query 952 TATTGATGTCTTGTCAAGGACTCTACAAGACCCAACAATAATCTATATTGACATCTATAG 1011
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 834 TATTGATGCCTTGTCAAGGACTCTACGAGACCCAACAATAATCTATATTGACATCTATAG 893
Query 1012 TCCTCTTCTTGATCTCATTTTAAACCCTCATCAATATGGATTTAAGGTGGCCAATAAAGG 1071
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 894 TCCTCTTCTTGATCTCATTTTAAATCCTCATCAATATGGATTTAAGGTGGCCAATAAAGG 953
Query 1072 ATGTTGCGGAACCGGATTAATAGAAGTTACTGCGCTATGCAACAACTATACAGCTTCT 1129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 ATGTTGCGGAACCGGATTAATAGAAGTTACTGCGCTATGCAACAACTATACAGCTTCT 1011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52678808835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5