BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75900.1
Length=1409
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316515 jgi|Araly1|316515|fgenesh1_pm.C_scaffold_2001548 1605 0.0
> Ahg316515 jgi|Araly1|316515|fgenesh1_pm.C_scaffold_2001548
Length=2067
Score = 1605 bits (869), Expect = 0.0
Identities = 992/1051 (94%), Gaps = 10/1051 (1%)
Strand=Plus/Plus
Query 120 ATGAAAGACAATTCAAGCTGGTCTTGTTCTTGTTCTTGGTCTTCGTGGAAAATATGTTTG 179
||||||||||||||||||| | | |||||||||||||| ||||||||||||||||||
Sbjct 1 ATGAAAGACAATTCAAGCT-G----G-TCTTGTTCTTGGTCGTCGTGGAAAATATGTTTG 54
Query 180 TTGTCTGTTCTCTTTCTCACCGAGACGATCACCGCCGTGAAGCTGCCGCCAAAATTGATT 239
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||
Sbjct 55 TTGTCTGTTCTCTTTCTCACCGAGACGATCACTGCCGTGAAGCTGCCGCCAAAGTTGGTT 114
Query 240 ATTCCGGCTG-TAATCGCTTTCGGAGACTCCATCGTCGACACAGGAATGAACAACAATGT 298
||||||| | || ||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 115 GTTCCGGC-GCTATTCGCTTTTGGAGACTCCATCGTCGACACGGGAATGAACAACAATGT 173
Query 299 CAAAACCGTGGTTAAGTGTGATTTTCTTCCTTATGGTATCAATTTCCAAAGCGGAGTTGC 358
|||||||||||||||||||||||||| |||||| ||||| |||||||| ||||||||||
Sbjct 174 CAAAACCGTGGTTAAGTGTGATTTTCATCCTTACGGTATTGATTTCCAAGGCGGAGTTGC 233
Query 359 CACGGGGAGATTCTGCGATGGACGAGTCCCTGCCGATTTGCTAGCCGAAGAACTGGGAAT 418
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 234 CACGGGGAGGTTCTGCGACGGACGAGTCCCTGCCGATTTGCTAGCCGAAGAACTGGGAAT 293
Query 419 AAAATCAATTGTACCAGCATACCTAGATCCGAATCTAAAATCGAAAGATCTTTTAACCGG 478
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 294 AAAATCAATTGTACCAGCATACCTCGATCCGAATCTAAAATCCAAAGATCTTTTAACAGG 353
Query 479 TGTATCGTTTGCGTCCGGAGGTTCTGGTTATGATCCTATAACACCGAAACTTGTGGCAGT 538
|||||| |||||||| ||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 354 TGTATCATTTGCGTCAGGAGGTTCTGGTTATGATCCTATAACACCGAAAATCGTGGCAGT 413
Query 539 AATATCATTAGAAGATCAATTGAGTTATTTCGAGGAGTACATAGAGAAAGTGAAGAATAT 598
||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||
Sbjct 414 AATATCATTAGAAGAGCAATTAACATATTTCGAGGAGTACATAGAGAAAGTGAAGAATAT 473
Query 599 AGTTGGGGAAGCAAGAAAAGACTTCATAGTAGCCAACAGCTTATTCTTATTGGTCGCAGG 658
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 AGTTGGGGAAGAAAGAAAAGACTTCATAGTAGCCAACAGCTTATTCTTATTGGTCGCAGG 533
Query 659 CAGCGACGACATAGCCAATACATACTATACTCTACGTGCAAGACCTGAATACGACGTCGA 718
||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| ||||
Sbjct 534 CAGCGACGACATAGCCAATACATACTACACTATTCGTGCAAGACCTGAATACGACATCGA 593
Query 719 TTCATACACTACTCTTATGTCTGACTCTGCCTCAGAATTTGTGACTAAACTATATGGATA 778
||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 594 TTCCTATACTACTCTTATGTCTGACTCTGCCTCAGAATTTGTGACTAAACTGTATGGATA 653
Query 779 TGGAGTGAGAAGAGTAGCTGTGTTTGGTGCACCACCAATTGGGTGTGTACCATCACAGAG 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 TGGAGTGAGAAGAGTAGCTGTGTTTGGTGCACCACCAATTGGGTGTGTACCATCACAGAG 713
Query 839 AACGTTAGGAGGAGGTATCT-TGAGAGATTGTGCTGATAATTACAACGAAGCAGCAAAAC 897
||| |||||||||||||| | |||||||||||||||| | |||||||||||||||||| |
Sbjct 714 AACCTTAGGAGGAGGTAT-TATGAGAGATTGTGCTGAGACTTACAACGAAGCAGCAAAGC 772
Query 898 TTTTTAATTCAAAGCTCTCCCCAAAATTGGATTCGTTGCGTAAAACCCTACCGGGCATCA 957
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 773 TTTTCAATTCAAAGCTCTCCCCAAAATTGGATTCGTTGCGTAAAACTCTACCGGGTATCA 832
Query 958 AACCGATCTACATTAATATCTATGATCCTCTTTTTGACATCATCCAGAATCCTGCAAATT 1017
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 833 AACCGATCTACATTAATATATATGATCCTCTTTTTGACATCATCCAGAATCCTGCTAATT 892
Query 1018 ATGGGTTTGAAGTGTCTAATAAAGGATGCTGTGGAACAGGAGCCATAGAAGTTGCTGTGT 1077
|||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 893 ATGGGTTTGAAGTGGCCAATAAAGGATGTTGTGGAACAGGAGCCATAGAAGTTGCTGTGT 952
Query 1078 TGTGCAATAAAATCACATCTTCTGTATGTCCCGACGTGTCTACTCATGTGTTTTGGGACA 1137
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 953 TGTGCAATAAAATCACGTCTTCTGTATGTCCCGACGTGTCTAGTCATGTGTTTTGGGACA 1012
Query 1138 GTTATCATCCTACAGAGAAAACTTACAAAGT 1168
|||||||||||||||| ||||||||||||||
Sbjct 1013 GTTATCATCCTACAGAAAAAACTTACAAAGT 1043
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52678808835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5