BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75920.1
Length=1207
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476744 jgi|Araly1|476744|fgenesh2_kg.2__1874__AT1G75920.1 1683 0.0
Ahg316515 jgi|Araly1|316515|fgenesh1_pm.C_scaffold_2001548 841 0.0
> Ahg476744 jgi|Araly1|476744|fgenesh2_kg.2__1874__AT1G75920.1
Length=1102
Score = 1683 bits (911), Expect = 0.0
Identities = 1051/1116 (94%), Gaps = 19/1116 (2%)
Strand=Plus/Plus
Query 1 ATGTTGGTGTTAGCATTATTTTCCATTTACTTCTTATCAATAGAAGCTGTCCGGAATGAA 60
|||||| |||||||||||||||||| ||| |||||||||||||||||||||| |||||||
Sbjct 1 ATGTTGTTGTTAGCATTATTTTCCACTTATTTCTTATCAATAGAAGCTGTCCCGAATGAA 60
Query 61 TCATTTCCTGCGCTATTAGCTTTTGGAGATTCAATGGTCGATACTGGTAACAACAATTAC 120
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 TCATTTCCTGCGCTATTGGCTTTTGGAGATTCAATGGTCGATACCGGTAACAACAATTAC 120
Query 121 CTCCTGACTCTAATGAAAGGAAATTACTGGCCATATGGGTGGAATTTCGACTCAAAAATA 180
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 CTCCTCACTCTAATGAAAGGAAATTACTGGCCATATGGGTGGAATTTCGACAAAAAAATA 180
Query 181 CCGACCGGAAGATTTGGAAACGGAAGAGTTTTCTCCGATGTAGTTGGTATAATATTAAAG 240
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 181 CCGACAGGAAGATTTGGAAACGGAAGAGTTTTCTCCGATATAGTTGGTATAATATT-AA- 238
Query 241 AGTTCTTTACAATGCTTTTTTGTAATTTCTGCTGAAGGTTTGGGGATCAAAAGAATTGTA 300
| | ||| | |||||| || | | ||||||||||||||||||||||||||||||
Sbjct 239 A--T-TTT----T--TTTTTT-CAACTGCAGCTGAAGGTTTGGGGATCAAAAGAATTGTA 288
Query 301 CCAGCTTATCGTAAGTTATACATTGCTCCAAGCGACCTTAAAACGGGTGTTTCTTTTGCA 360
||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||
Sbjct 289 CCAGCTTATCGTAAGTTGTACATTGCTCCAAACGACCTTAAAACTGGTGTTTCTTTTGCA 348
Query 361 TCAGGTGGTGCAGGAGTCGACCCTGTTACATCC-AAATTGCTGAGAGTTTTATCGCCAGC 419
||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||| ||
Sbjct 349 TCAGGTGGTGCAGGAGTTGACCCTGTTACATCCGAAA-TGCTGAGAGTTTTATCGCCGGC 407
Query 420 TGACCAAGTaaaagatttcaaaggctacaaaagaaagctaaaaggtgtagtaggcaggtc 479
| |||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
Sbjct 408 CGCCCAAGTAAAAGATTTCAAAGGCTACATAAGAAAGCTAAAAGGCATAGTAGGCAAGAA 467
Query 480 aaaagcaaaaaaaaTAGTTGCAAATTCAGTGATTCTTGTTTCTGAAGGAAATAATGATAT 539
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 468 AAAAGCAAAAGAAATAGTTGCAAACTCAGTGATTCTTGTTTCTGAAGGAAATAATGATAT 527
Query 540 TGGAATCACATATGCGATTCATGATGCTGGTATGCGATTAATGACTCCGAA-AGTATACA 598
|||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||
Sbjct 528 TGGAATCACATATGCGATTCATGATGCTGGTATGCGATTAATGACTCCCAATA-TATACA 586
Query 599 CCAGTAAATTAGTTGGTTGGAACAAAAAATTTATAAAAGATTTATATGATCACGGAGCAA 658
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 587 CCAGTAAATTAGTTGGTTGGAACAAAAAATTTATAAAAGATTTATATGATCAAGGAGCAA 646
Query 659 GAAAATTTGCGGTGATGGGAGTGATACCATTGGGATGTTTGCCTATGTCAAGACTTATTT 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 647 GAAAATTTGCGGTGATGGGAGTGATACCATTGGGATGTTTGCCTATGTCAAGACTCATCT 706
Query 719 TTGGTGGGTTCTTCGTGTGGTGTAATTTCTTGGCAAACACAATCTCTGAAGATTACAACA 778
||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 707 TTGGTAGGTTCTTCGTGTGGTGTAATTTCTTGGCAAATACAATCTCGGAAGATTACAACA 766
Query 779 AAAAATTGAAAAGCGGAATTAAAAGTTGGAGAGGAGCATCAGATTTTAGGGGTGCTAGGT 838
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 767 AAAAATTGAAAAGCGGAATTAAAAGTTGGAGAGGAGAATCAGATTTTAGGGGTGCTAGGT 826
Query 839 TTGTCTATGTCGACATGTACAACTCTCTTATGGATGTTATCAACAATCATAGGAAATACG 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 TTGTCTATGTCGACATGTACAACTCTCTTATGGATGTTATCAACAATCATAGGAAATACG 886
Query 899 GATTTACCCATGAGAAGAATGGATGTTGTTGTATGCTTACGGCAATAGTACCATGCTCCA 958
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 GATTTACACATGAGAAGAATGGATGTTGTTGTATGCTTACGGCAATAGTACCATGCTCCA 946
Query 959 ACCCAGATAAATATGTCTTCTATGACTTTGCTCATCCCTCCGAGAAAGCCTACAAAACAA 1018
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 ATCCAGATAAATATGTCTTCTATGACTTTGCTCATCCCTCCGAGAAAGCCTACAAAACAA 1006
Query 1019 TTGCTAAAAAGCTTGTCGAGGATATCAAGACAGGACTTGCCTGATTTCTTACAATGCT-- 1076
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
Sbjct 1007 TTGCTAAAAAGCTTGTCGAGGATATCAAGACAGGCCTTGCTTGATTTCTTACAATGATTT 1066
Query 1077 ATTTTCATCTTGG-AATTACCATAATTAATTATATA 1111
||||||||| || ||||||||| ||||||||||||
Sbjct 1067 ATTTTCATCGTGATAATTACCATCATTAATTATATA 1102
> Ahg316515 jgi|Araly1|316515|fgenesh1_pm.C_scaffold_2001548
Length=2067
Score = 841 bits (455), Expect = 0.0
Identities = 695/808 (86%), Gaps = 27/808 (3%)
Strand=Plus/Plus
Query 270 TGCTGAAGGTTTGGGGATCAA-AAGAATTGTACCAGCTTATCGTAAGTTATACATTGCTC 328
||||||||||||||||||||| || |||| ||||||||||||||||||| | | || |||
Sbjct 1272 TGCTGAAGGTTTGGGGATCAAGAA-AATTTTACCAGCTTATCGTAAGTTGTTCGTTTCTC 1330
Query 329 CAAGCGACCTTAAAACGGGTGTTTCTTTTGCATCAGGTGGTGCAGGAGTCGACCCTGTTA 388
|||||||||||| ||| ||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1331 CAAGCGACCTTAGAACTGGTGTTTGTTTCGCATCAGGTGGTGCAGGAGTCGACCCTGTTA 1390
Query 389 CATCCAAATTGCTGAGAGTTTTATCGCC-AGCTGACCAAGTaaaagatttcaaaggctac 447
||||||||||||||||||||||| |||| || || |||||||| |||||||||||||||
Sbjct 1391 CATCCAAATTGCTGAGAGTTTTAACGCCAAG-GGATCAAGTAAACGATTTCAAAGGCTAC 1449
Query 448 aaaagaaagctaaaagg-tgtagtagg-caggtcaaaagcaaaaaaaaTAGTTGCAAATT 505
| ||||||||| ||||| || ||| | |||||||||||| ||||||| ||||||
Sbjct 1450 ATAAGAAAGCT-AAAGGCCACAGCAGGTC-CTTCAAAAGCAAAAGAAATAGTCGCAAATG 1507
Query 506 CAGTGATTCTTGTTTCTGAAGGAAATAATGATATTGGAATCACATA---TGCG-A-TTCA 560
||||||||||||||||| ||||||||||||||||||||||| |||| || | | | ||
Sbjct 1508 CAGTGATTCTTGTTTCTCAAGGAAATAATGATATTGGAATCTCATATTTTG-GAACTCCA 1566
Query 561 TGATGCTGGTATGCGATTAATGACTCCGAA-AGTATACACCAGTAAATTAGTTGGTTGGA 619
| | ||| | | ||| | ||||||| || || |||||||| |||| ||| ||||||||
Sbjct 1567 TCA-GCTACTTTCCGAGGATTGACTCCCAATAG-ATACACCACTAAACTAGCTGGTTGGA 1624
Query 620 ACAAAAAATTTATAAAAGATTTATATGATCACGGAGCAAGAAAATTTGCGGTGATGGGAG 679
||||| | ||||| ||||| ||||||||||| ||||| |||||||| |||||||||||||
Sbjct 1625 ACAAACAGTTTATGAAAGAATTATATGATCAAGGAGCGAGAAAATTCGCGGTGATGGGAG 1684
Query 680 TGATACCATTGGGATGTTTGCCTATGTCAAGACTTATTT-TTGGTGGGTTCTTCGTGTGG 738
|||||||||||||||||||||||||||||||| | ||| ||||||||||| || | |||
Sbjct 1685 TGATACCATTGGGATGTTTGCCTATGTCAAGAATC-TTTCTTGGTGGGTTCGTCATTTGG 1743
Query 739 TGTAATTTCTTGGCAAACACAATCT-CTGAAGATTACAACAAAAAATTGAAAAGCGGAAT 797
||||| ||||| || || | | | | | |||||||||||| |||||||| |||||||
Sbjct 1744 TGTAACTTCTTCGCGAATAGAGT-TGCAGAAGATTACAACGGAAAATTGAGGAGCGGAAC 1802
Query 798 TAAAAGTTGGAGAGGAGCATCAGATTTTAGGGGTGCTAGGTTTGTCTATGTCGACATGTA 857
|||||||||| || ||| ||||| |||||| ||||| | |||||||||||||||||||
Sbjct 1803 TAAAAGTTGGGGAAGAGAATCAGGTTTTAGCGGTGCAAAATTTGTCTATGTCGACATGTT 1862
Query 858 CAACTCTCTTATGGATGTTATCAACAATCATAGGAA-ATACGGATTTACCCATGAGAAGA 916
|||| ||||||||||||||||||| |||||||| || |||||||||| | |||||||||
Sbjct 1863 CAACACTCTTATGGATGTTATCAAAAATCATAG-AAGATACGGATTTTCTAATGAGAAGA 1921
Query 917 ATGGATGTTGTTGTATGCTTACGGCAATAGTACCATGCTCC-AACCCAGATAAATATGTC 975
|||| |||||||||||| ||||||| ||||||||||| ||| ||||| |||||||| |||
Sbjct 1922 ATGGGTGTTGTTGTATGATTACGGCGATAGTACCATG-TCCCAACCCTGATAAATACGTC 1980
Query 976 TTCTATGACTTTGCTCATCCCTCCGAGAAAGCCTACAAAACAATTGCTAAAAAGCTTGTC 1035
||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1981 TTCTATGACTTCGTTCATCCCTCCGAGAAAGCCTACAAAACAATTTCTAAAAAGCTTGTC 2040
Query 1036 GAGGATATCAAGACA-GGACTTGCCTGA 1062
|||||||||||| | || |||||||||
Sbjct 2041 CAGGATATCAAGA-ATGGCCTTGCCTGA 2067
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45061287894
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5