BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75940.1
Length=1878
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316517 jgi|Araly1|316517|fgenesh1_pm.C_scaffold_2001550 2662 0.0
Ahg474364 jgi|Araly1|474364|fgenesh2_kg.1__4318__AT1G52400.1 754 0.0
Ahg941288 jgi|Araly1|941288|scaffold_601832.1 449 3e-125
Ahg952422 jgi|Araly1|952422|scaffold_7000004.1 99.0 1e-19
> Ahg316517 jgi|Araly1|316517|fgenesh1_pm.C_scaffold_2001550
Length=2700
Score = 2662 bits (1441), Expect = 0.0
Identities = 1550/1603 (97%), Gaps = 6/1603 (0%)
Strand=Plus/Plus
Query 39 GTTTCATAAATTTCCTCTCCTAGGTTTAGTTCTGTTCCTCGGTCTGACCGGCTCACTTAT 98
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 GTTTCATAAATTTCCTCTCCTAGGTTTAGTTCTGTTCCTCGGTCTGACCGGCTCACTTA- 1159
Query 99 C-GCCGCCAATGAGTATGCCTGTTCTAGTACCGATATACACTTTACTCGTGCCAATTTCC 157
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 CTGTCGCCAATGAGTATGCCTGTTCTAGTACCGATATACACTTTACTCGTGCCAATTTCC 1219
Query 158 CTAAAGGTTTCATTTTTGGTACCGCAACTGCTGCTTTTCAGGTTGAAGGAGCTGTAAATG 217
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 1220 CTAAAGGTTTCATTTTTGGTACCGCCACTGCTGCTTTTCAGGTTGAAGGAGCTGTAGATG 1279
Query 218 AAGGATGTAGAGGTCCAAGCATGTGGGACGTATACACCAAGAAATTCCCACATAAATGTA 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1280 AAGGATGTAGAGGTCCAAGCATGTGGGACGTATACACCAAGAAATTCCCACATAAATGTA 1339
Query 278 ATTATCACAATGCCGACGTTGCTGTCGATTTCTACCATCGTTACAAGGAAGATATCAAGT 337
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1340 ATTATCACAATGCCGACGTTGCTGTCGACTTCTACCATCGTTACAAGGAAGATATCAAGT 1399
Query 338 TGATGAAAAATCTGAACACTGATGGCTTTAGATTTTCCATTGCATGGCCCAGAATATTCC 397
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1400 TAATGAAAAATCTGAACACTGATGGCTTTAGATTTTCCATTGCATGGCCCAGAATATTCC 1459
Query 398 CCCATGGTAGGATGGAGAAAGGAATAAGCAAAGCAGGTGTGCAGTATTACCACGATCTGA 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1460 CCCATGGTAGGATGGAGAAAGGAATAAGCAAAGCAGGTGTGCAGTATTACCACGATCTGA 1519
Query 458 TCGATGAGCTCCTCGCAAATGGTATAACACCATTAGTAACTGTTTTTCACTGGGACACTC 517
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1520 TCGATGAGCTCCTCGCAAATGGTATAACACCATTAGTTACCGTTTTTCACTGGGACACTC 1579
Query 518 CTCAAGACTTAGAAGATGAATATGGTGGCTTTTTAAGCGACCGCATAATAAAGGATTTTA 577
||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| |
Sbjct 1580 CTCAAGATTTAGAAGATGAATACGGTGGCTTCTTAAGCGACCGCATAATAAAGGATTTCA 1639
Query 578 CGGAGTATGCAAACTTCACATTCCAAGAGTACGGAGACAAAGTGAAGCATTGGATCACAT 637
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1640 CGGAGTATGCAAACTTCACATTCCAAGAGTACGGTCACAAAGTGAAGCATTGGATCACAT 1699
Query 638 TTAACGAACCATGGGTGTTCAGTCGAGCTGGCTACGACATTGGGAACAAAGCACCGGGAC 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1700 TTAACGAACCATGGGTGTTCAGTCGAGCTGGCTACGACATTGGGAACAAAGCACCAGGAC 1759
Query 698 GTTGTTCTAAGTACATCAAAGAACATGGAGAGATGTGTCACGATGGACGGTCAGGACACG 757
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1760 GTTGTTCTAAGTACATCAAAGAACATGGAGATATGTGTCACGATGGACGGTCAGGACACG 1819
Query 758 AAGCTTATATCGTTAGTCATAACATGCTCTTGGCACATGCCGATGCCGTTGATGCCTTTA 817
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1820 AAGCTTATATCGTGAGTCATAACATGCTCTTGGCACATGCCGATGCCGTTGATGCCTTTA 1879
Query 818 GGAAATGCGACAAGTGCAAAGGTGGTAAAATTGGGATTGCTCACAGTCCAGCTTGGTTTG 877
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1880 GGAAATGCGACAAGTGTAAAGGTGGTAAAATTGGGATTGCTCACAGTCCAGCTTGGTTTG 1939
Query 878 AGGCTCATGAGCTCTCGGATGAAGAGCACGAAACTCCTGTAACTGGCCTGATTGACTTCA 937
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1940 AGTCTCATGAGCTCTCGGAAGAAGAGCACGAAACTCCTGTAACTGGCCTGATTGACTTCA 1999
Query 938 TATTGGGATGGCATTTGCATCCGACCACATATGGAGATTATCCACAATCAATGAAGGATC 997
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 2000 TATTGGGATGGCATTTGCATCCGACCACGTTTGGAGATTATCCACAATCAATGAAGGATC 2059
Query 998 ACATCGGACATCGACTGCCGAAATTCACAGAGGCACAGAAAG-AGAAGTTGAAAAATTCA 1056
| |||||||||||||||| |||||||||||||| || |||| |||||||||||||||||
Sbjct 2060 ATGTCGGACATCGACTGCCAAAATTCACAGAGGCGCA-AAAGGAGAAGTTGAAAAATTCA 2118
Query 1057 GCTGATTTTGTAGGAATCAACTATTACACATCAGTGTTTGCATTGCACGACGAAGAGCCA 1116
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 2119 GCTGATTTTGTAGGAATCAACTATTACACTTCAGTGTTTGCATTGCATGACGAAGAGCCA 2178
Query 1117 GATCCTTCGCAACCAAGTTGGCAGAGTGATTCTCTCGTGGACTGGGAACCAAGGTATGTG 1176
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2179 GATCCTTCGCAACCAAGTTGGCAGAGTGATTCCCTCGTGGACTGGGAACCAAGGTATGTG 2238
Query 1177 GATAAATTCAATGCTTTTGCTAACAAGCCTGATGTTGCTAAAGTGGAAGTCTACGCAAAG 1236
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2239 GATAAATTCAATGCTTTTGCTAACAAGCCTGATGTTGCAAAAGTGGAAGTCTACGCAAAG 2298
Query 1237 GGTTTGAGGAGCCTCTTGAAATATATCAAGGACAAATACGGCAATCCTGAAATCATGATC 1296
|||||||||||||||||||||||||| ||||| ||||| || ||||||||||||||||||
Sbjct 2299 GGTTTGAGGAGCCTCTTGAAATATATAAAGGAAAAATATGGGAATCCTGAAATCATGATC 2358
Query 1297 ACCGAGAATGGATACGGAGAGGATCTAGGTGAGCAAGACACAAGCCTTGTAGTGGCGCTG 1356
||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 2359 ACCGAGAATGGATACGGAGAGGATCTAGGCGAGCAAGACTCAAGCCTTGTAGTGGCGCTC 2418
Query 1357 TCAGATCAGCACAGAACATACTATATCCAGAAACATCTCTTGAGCTTGCACGAAGCAATT 1416
||||| || ||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 2419 TCAGACCACCACAGAACATACTATATCCAGAAGCATCTCTTGAGCTTGCACCAAGCAATT 2478
Query 1417 TGCGATGATAAAGTAAACGTTACAGGGTATTTTCATTGGTCATTGATGGACAATTTTGAA 1476
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 2479 TGCGATGATAAAGTAAATGTTACAGGGTATTTTCTTTGGTCATTGATGGACAATTTTGAA 2538
Query 1477 TGGCAAGATGGATACAAGGCGAGATTTGGGCTCTACTACGTCGATTACAAAAATAATTTG 1536
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2539 TGGCAAGATGGATACAACGCGAGATTTGGGCTCTACTACGTCGATTACAAAAATAATTTG 2598
Query 1537 ACGCGCCACGAAAAATTATCAGCCCAGTGGTACTCGAGTTTCCTCCACGATGGA-TCAAA 1595
||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||
Sbjct 2599 ACGCGCCACGAAAAATTATCAGCACAGTGGTACTCGAGTTTCCTCCACGATGGACTGAAA 2658
Query 1596 AGAGTTCGAAATCGAGCACGAGTTCGAACACGATGAGTTGTAG 1638
|||||||||||||||||||| ||||| |||||||||||||||
Sbjct 2659 -GAGTTCGAAATCGAGCACGAATTCGAGCACGATGAGTTGTAG 2700
> Ahg474364 jgi|Araly1|474364|fgenesh2_kg.1__4318__AT1G52400.1
Length=1842
Score = 754 bits (408), Expect = 0.0
Identities = 1131/1469 (77%), Gaps = 94/1469 (6%)
Strand=Plus/Plus
Query 154 TTCCCTAAAGGTTTCATTTTTGGTACCGCAACTGCTGCTTTTCAGGTTGAAGGAGCTGTA 213
||||||||||| ||||||| || || ||||| || || ||||||||||||||||||||
Sbjct 201 TTCCCTAAAGGCTTCATTTGGGGAACGGCAACAGCAGCATTTCAGGTTGAAGGAGCTGTT 260
Query 214 AATGAAGGATGTAGAGGTCCAAGCATGTGGG--ACGTATACACCAAGAAATTCCCACATA 271
||||||| || ||||||||||||||||||| || | | ||| ||| | |||||| |||
Sbjct 261 GATGAAGGTTGCAGAGGTCCAAGCATGTGGGATAC-T-TTCACTAAGCAGTTCCCAAATA 318
Query 272 AATGT-AATTATCACAATGCCGACGTTGCTGTCGATTTCTACCATCGTTACAAGGAAGAT 330
|||| || |||| || || || |||||||| |||||||||||||||||||||||||||
Sbjct 319 GATGTGAA-AATCATAACGCTGATGTTGCTGTGGATTTCTACCATCGTTACAAGGAAGAT 377
Query 331 ATCAAGTTGATGAAAAATCTGAACACTGATGGCTTTAGATTTTCCATTGCATGGCCCAGA 390
||| |||||||||| | || ||||||||||| |||||| |||| ||||| |||||||||
Sbjct 378 ATCCAGTTGATGAAGGACCTTAACACTGATGGTTTTAGACTTTCTATTGCGTGGCCCAGA 437
Query 391 ATATTCCCCCATGGTAGGATGGAGAAAGGAATAAGCAAAGCAGGTGTGCAGTAT-TACCA 449
|||||||||||||| |||||| || ||||||||||||| ||| || || | | |||||
Sbjct 438 ATATTCCCCCATGGAAGGATGTCTAAGGGAATAAGCAAAGTAGGAGTCCAAT-TCTACCA 496
Query 450 CGATCTGATCGATGAGCTCCTCGCAAATGGTATAACACCATTAGTAACTGTTTTTCACTG 509
||| || ||||||||||| ||| ||| ||||| |||| ||||||| || ||||||||
Sbjct 497 CGACCTCATCGATGAGCTTCTCAAAAACAATATAATACCACTAGTAACAGTCTTTCACTG 556
Query 510 GGACACTCCTCAAGACTTAGAAGATGAATATGGTGGCTTTTTAAGCGACCGCATAATA-A 568
||| |||||||||||||| |||||||||||||||||||| ||||| | ||||| | |
Sbjct 557 GGATACTCCTCAAGACTTGGAAGATGAATATGGTGGCTTCTTAAGTGGTCGCATCGTGCA 616
Query 569 AGGATTTTACGGAGTATGCAAACTTCACATTCCAAGAGTACGGAGACAAAGTGAAGCATT 628
|| |||||||||| | ||| || ||||| ||||| || |||||| |||| || || |||
Sbjct 617 AG-ATTTTACGGAATTTGCGAATTTCACTTTCCATGAATACGGACACAAGGTAAAAAATT 675
Query 629 GGATCACATTTAACGAACCATGGGTGTTCAGTCGAGCTGGCTACGACATTGGGAACAAAG 688
|||||||||| || || ||||||||||| ||||| || || ||||||| || || ||||
Sbjct 676 GGATCACATTCAATGAGCCATGGGTGTTTAGTCGTGCCGGTTACGACAACGGAAAGAAAG 735
Query 689 CACCGGGACGTTGTTCTA--AGTACATCAAAGAACATGGAGAGATGTGTCACGATGGACG 746
| |||||||||||||| | | || ||| | |||||||| | ||||| ||||||||
Sbjct 736 CTCCGGGACGTTGTTC-ACCA-TATATCCCCGGTTATGGAGAGCTTTGTCAAGATGGACG 793
Query 747 GTCAGGACACGAAGCTTAT-ATCGTTAGTCATAACATGCTCTTGGCACATGCCGATGCCG 805
||| ||| ||||||||||| | || ||||| ||| | |||||| | ||||| | ||||
Sbjct 794 GTCTGGATACGAAGCTTATCAA-GTCAGTCACAACTTACTCTTGTCGCATGCTTACGCCG 852
Query 806 TTGATGCCTTTAGGAAATGCGA-CAA-GTGCAAAGGTGGTAAAATTGGGATTGCTCACAG 863
|||| || || || |||||| | || |||| || ||||||||||| ||||| |||||
Sbjct 853 TTGACGCATTCAGAAAATGCAAACAGTGTGCT--GGAGGTAAAATTGGAATTGCACACAG 910
Query 864 TCCAGCTTGGTTTGAGGCTCATGAGCTCTCG-G-ATGAAGAGCACGAAACTCCT-GTAAC 920
|||||||||||| || | || || || | | | ||| | | | | | | | | |||
Sbjct 911 TCCAGCTTGGTTCGAACCACAAGACCT-T-GAGCATGTTG-G-AGGTG-C-CATTG-AAC 963
Query 921 -TGGCCTGATTGACTTCATATTGGGATGGCATTTG-CATCCGACCACATATGGAGATTAT 978
|| || |||| ||||| |||||||||||||| | ||| || || ||||||||||||
Sbjct 964 GTG---TGCTTGATTTCATCCTGGGATGGCATTTGGC-TCCAACAACTTATGGAGATTAT 1019
Query 979 CCACAATCAATGAAGGATCACATCGGACATCGACTGCCGAAATTCACAGAGGCACAGAAA 1038
|||||||| ||||| |||| |||| ||| || |||| ||||| ||||| || ||||
Sbjct 1020 CCACAATCCATGAAAGATCGTGTCGGTCATAGATTGCCAAAATTTACAGAAGCTGAGAA- 1078
Query 1039 GAGAAGT--TGAAAAATTC-AGCTGATTTTGTAGGAATCAACTATTACACATCAGTGTTT 1095
|| || | |||| |||| | | |||| ||||||||| || ||||| || |||||||||
Sbjct 1079 GA-AATTGCTGAAGGATTCTA-CAGATTATGTAGGAATGAATTATTATACTTCAGTGTTT 1136
Query 1096 GCATTGCACGACGAAG-AGCCAGA-TCCTTCGCAA-CCAAGTTGG-CAGAGTGATTCTCT 1151
||| | || || | || | |||| | | || |||||| | |||||||||||
Sbjct 1137 GCAAA--A-GA--AATTAACCCTAATCCTAAG-AGTCCGAGTTGGACT-AGTGATTCTCT 1189
Query 1152 CGTGGACTGGGA-ACCAAG-GTATGTGGATAAATTCAATGCTTTTGCTAACAAGCCTGAT 1209
|| || ||||| | |||| || ||||| || ||| || | || |||||| | |
Sbjct 1190 TGTTGATTGGGATAGCAAGAGT--GTGGACGGATACAAAA-TTG-G-TAGCAAGCC-G-T 1242
Query 1210 GTTG-C--TAAAGTGGAAGTCTACGC-AAAGGGTTTGAGG-AGCCTCTTGAAATATATCA 1264
|| | |||| | || || || | ||||| | ||| | ||| ||||| ||||| |
Sbjct 1243 -TTAACGGTAAACTCGATGTGTATTCCAAAGGAAT-GAGATA-CCTTTTGAAGTATATTA 1299
Query 1265 AGGACAAATACGGCAATCCTGAAATCATGATCACCGAGAATGGATACGGAGAGGATCTAG 1324
|||| || || ||| | || ||||| || || ||||||||||| |||||||||||||| |
Sbjct 1300 AGGATAACTATGGCGACCCAGAAATTATCATTACCGAGAATGGTTACGGAGAGGATCTTG 1359
Query 1325 GTGAGCAAGACACAA-GCCTT-G-TAGTGGCG-CTGTCA-GATCAGCA-CAG-AACATAC 1377
| ||| ||| ||||| | | | | | ||| | | || ||||| || ||| || |||
Sbjct 1360 GAGAG-AAG-CACAATGACGTAGATTTTGG-GACA--CAAGATCA-CAACAGGAA-ATAT 1412
Query 1378 TATATCCAGAAACATCTCTTGAGCT-TGCACGAAGCAATTTGCGATGATAAAGTAAACGT 1436
||| |||||| ||||||||||| | |||||||||| |||||| | || ||||| |||||
Sbjct 1413 TATCTCCAGAGGCATCTCTTGAG-TATGCACGAAGCCATTTGCCAAGACAAAGTGAACGT 1471
Query 1437 TACAGGG-TATTTTCAT-TGGTCATTGATGGACAATTTTGAATGGCAAGATGGATACAAG 1494
||| ||| ||||| | | ||||| ||||||||||| || || ||||||||||| ||||||
Sbjct 1472 TAC-GGGATATTT-CGTGTGGTCGTTGATGGACAACTTCGAGTGGCAAGATGGGTACAAG 1529
Query 1495 GCGAGATTTGGGCTCTACTACGTCGATTACAAAAATAATTTGACGCGCCACGAAAAA-TT 1553
|||||||| ||||| |||||| |||||| | | || ||| |||| || ||| ||||| ||
Sbjct 1530 GCGAGATTCGGGCTTTACTACATCGATTTCCAGAACAATCTGACCCGTCACCAAAAAGTT 1589
Query 1554 ATCAGCCCAGTGGTACTCG-AGTTTCCTC 1581
|| | | | ||||| ||| | |||||||
Sbjct 1590 -TCGGGCAAATGGTATTCGGA-TTTCCTC 1616
> Ahg941288 jgi|Araly1|941288|scaffold_601832.1
Length=1638
Score = 449 bits (243), Expect = 3e-125
Identities = 1078/1461 (74%), Gaps = 138/1461 (9%)
Strand=Plus/Plus
Query 153 TTTCCCTAAAGGTTTCATTTTTGGTA-CCGCAACTGCTGCTTTTCAGGT-TGAAGGAGCT 210
||||||| ||||||| |||||||| | | || |||| || ||||| || |||||| ||
Sbjct 148 TTTCCCTCAAGGTTTTATTTTTGG-AGCTGCTTCTGCCGCATTTCA-GTATGAAGGTGCG 205
Query 211 GTAAATGAAGGATGTAGAGGTCCAAGCATGTGGGACGTA-TACACCAAGAAA-TTCCCAC 268
|| | |||||||| || |||||||| |||||||| || || ||| ||| | ||
Sbjct 206 GTCCACGAAGGATGCAGGGGTCCAAGTATGTGGGA-TTACTATACCCTTAAACAT-CCTG 263
Query 269 ATA-AATGTAATTATCACAATGCCGACGTTGCTGTCGATTTCTACCATCGTTACAAGGAA 327
| | | || || | |||||||| || || || ||||||||||||||||||||||||
Sbjct 264 AGAGGA-CAAACAATGATAATGCCGATGTAGCAGTTGATTTCTACCATCGTTACAAGGAA 322
Query 328 GATAT-CAAGTTGAT-GAA-AAATCTGAACACTG-ATGGCTTT-AGATTTTCCATTGCAT 382
||||| || ||| || ||| ||| || |||| || | || ||| ||||| || || |||
Sbjct 323 GATATTCA-GTT-ATTGAAGAAA-CTAAACA-TGGACGG-TTTCAGATTCTCTTTTTCAT 377
Query 383 GGCCCAGAATATTCCCCCATGGTAGGATGGAGAAAGGAATAAGCAAAGCAGGTGTGCA-G 441
||||| ||||||| || ||||| || | ||| || || | ||||| | ||||| || |
Sbjct 378 GGCCCCGAATATTTCCTCATGGAAGAAAGGATAAGGGCGTTAGCAAGGTGGGTGT-CAAG 436
Query 442 TATTACCACGATCTGATCGATGAGCTCCTCGCAAATGGTATAACACCATTAGTAACTGTT 501
| |||||||||||| || || ||||| || |||||||||||||| ||| ||| ||| ||
Sbjct 437 TTTTACCACGATCTTATAGACGAGCTTCTTGCAAATGGTATAACTCCACTAGCAACGGTC 496
Query 502 TTTCACTGGGACACTCCTCAAGACTTAGAAGATGAATATGGTGGCTTTT-TAAGCGACCG 560
|| || ||||||| |||||||||| ||||||||||||| || || |||| ||||||| ||
Sbjct 497 TTCCATTGGGACATTCCTCAAGACCTAGAAGATGAATACGGCGG-TTTTCTAAGCGAACG 555
Query 561 CATAATAAAGGATTTTACGGAGTATGCAAACTTCACATTCCAA-GAGTACGGAGACAAAG 619
||||| | |||||| |||| ||| |||||||| ||| || ||||| || ||||||
Sbjct 556 TGTAATAGATGATTTTGTTGAGTTTGCCAACTTCACGTTC-AACGAGTATGGCCACAAAG 614
Query 620 TGAAGCATTGGATCACATTTAACGAACCATGGGTGT-TCAGTC-GAGCTGGCTACGACAT 677
||||| | |||||||| || ||||| || ||||||| | || | |||| || ||||||||
Sbjct 615 TGAAGAAGTGGATCACGTTCAACGAGCCGTGGGTGTAT-AG-CAGAGCCGGTTACGACAT 672
Query 678 TGGGAACAAAGCACCGGGACGTTGTTCT-AAGTACATCAAAGAACATGGAGAGATGTGTC 736
||||| ||||| ||||||||||| || || || |||| || ||| | ||||
Sbjct 673 AGGGAAGAAAGCGCCGGGACGTTGCTCGCAA-TATGTCAA----CA---AGAC-T-TGTC 722
Query 737 ACG-ATGGACGGTCAGGACACGAAGCTT-ATATCGTTAGTCATAA-CATGCTCTTGGCAC 793
| | ||| | ||||| ||||| |||| | || || || || || | | || || || |
Sbjct 723 TTGGAGGGA-GTTCAGGGCACGA-GCTTTACATAGTCAGCCACAATC-TACTTTTAGCTC 779
Query 794 ATGCCGATGCCGTTGATGCCTTTAGGAAATGCGACAA-GTGCAAAGGTGGTAAAATTGGG 852
||||||| |||||| ||| ||||| ||||||| ||| |||||||||||| || || |||
Sbjct 780 ATGCCGAAGCCGTTCATGAGTTTAGAAAATGCG-CAAAGTGCAAAGGTGGGAAGATCGGG 838
Query 853 ATTGCTCACAGTCCAGCTTGGTTTGAGGCTCATGAGCTCTCG-GATGAAGAGCAC--GA- 908
||||| || ||||| ||||||| ||| | || | |||| | | | || ||| |
Sbjct 839 ATTGCGCATAGTCCTTCTTGGTTCGAGCCCCACG--CTCTTGAG-TCTAGTCCACATGCC 895
Query 909 AAC-TC-CTGT--AACTG-GCC-TGATTGACTTCATATTGGGATGGCATTTGCATCCGAC 962
|| | |||| ||| | ||| | | || ||||| ||||||||||| || |||| ||
Sbjct 896 AATGTTTCTGTTGAAC-GAGCCCT-A--GAGTTCATGTTGGGATGGCACATGAATCCAAC 951
Query 963 CACATATGGAGATTATCCACA-ATCAATGAAGGATCACA-TCGGACATCGACTGCCGAAA 1020
||||||||| ||||||||||| || |||||||||||| | ||||| |||| |||| |||
Sbjct 952 CACATATGGTGATTATCCACAGAT-AATGAAGGATCA-AGTCGGAGATCGGTTGCCTAAA 1009
Query 1021 TTCACAGAGGCA-CAGAAAG-AGAAGTTGAAAAAT-TCAGCTGATTTTGTAGGAATCAAC 1077
|||||||||| | || |||| |||| |||| | | ||| ||||||||| || |||||
Sbjct 1010 TTCACAGAGG-ATCA-AAAGCAGAAACTGAAGA-TGTCATATGATTTTGTTGGGATCAAT 1066
Query 1078 TATTACACAT-C-AGTGTTTGCATTGCACGACGAA-G-AGC-CA--GATCCTTCGCA-AC 1129
||||| || | | | || || | || || || | | | || |||||||| | ||
Sbjct 1067 TATTATAC-TGCCACC-TTCGC-T-GCTT-AC-AATGGA-CTCATTGATCCTTCA-AGAC 1118
Query 1130 CAAGTTGGCAGAG-TGATTCTCTCGTGGACTGGGAACC-AAGG-TATG-T-GGATA-AAT 1183
||| |||| | | ||| ||||| || | ||||| || ||| ||| | ||||| ||
Sbjct 1119 CAACTTGGGA-ATCTGACTCTCTTGTTAAGTGGGATCCCAAGAATATACTAGGATACAA- 1176
Query 1184 TCAATGCTTTTGCTAACAAGCCTG-ATGTTGCTAAAGTGGAAGTCTACGCAAAGGGTTTG 1242
|| | | | || ||||||| | | ||| | | | || || ||||| || ||
Sbjct 1177 -CA-T-CG---G-TAGCAAGCCTTTAACT-GCTTCACTCGCCGTTTATGCAAATGGATT- 1227
Query 1243 A-GG-AGCCTCTTGAAATATATCAAGGACAAATACGGCAATCCTGAAATCATGATCACCG 1300
| || | | ||| ||||||| | ||||| |||||||| |||| || || || ||| | |
Sbjct 1228 ACGGGAACTTCT-GAAATATGTTAAGGATAAATACGGTGATCCAGAGATTATCATCGCAG 1286
Query 1301 AGAATGGATACGGAGAG-GATCTAGGTGAGC-AA-GACACAAGCCTTGT-AGTGGCGCTG 1356
|||||||||| |||||| | | | || |||| || || | | || || | || | |||
Sbjct 1287 AGAATGGATATGGAGAGAGTT-T-GG-GAGCTAATGATA-A-GC-TTCCCAATG-CACTG 1339
Query 1357 TCAGA-TCAGCAC-AGAACATACTAT-ATCCAGAAACATCTCTTGAG-CTTGCACGAAGC 1412
| || | | || |||| ||| || | ||||| ||||| || || || | || ||
Sbjct 1340 GCTGACT-A-CAATAGAAAATATTACCA-CCAGAGGCATCTTTTAAGTCTAA-ATGAGGC 1395
Query 1413 AATTTGCGATG-ATAAAGTAAACGTTACAGGGTATTTT-CATTGGTCATTGATGGACAAT 1470
|||||| | || |||||||||| || ||||| || ||| ||| |||||||| | ||||||
Sbjct 1396 AATTTGTG-TGGATAAAGTAAATGTGACAGGATACTTTGCAT-GGTCATTGCTAGACAAT 1453
Query 1471 TTTGAATGGCAAGATGGATAC-AAGGCGAGATTTGGGCTCTACTACGTCGATTACAAAAA 1529
|| |||||||||||||| || || |||||| ||||| || ||| |||| ||||||||
Sbjct 1454 TTCGAATGGCAAGATGGTTATGAAA-CGAGATACGGGCTGTATTACATCGACTACAAAAA 1512
Query 1530 TAATTTGACGCGCCACGAAAA 1550
||||||||| || ||||||||
Sbjct 1513 TAATTTGACTCGTCACGAAAA 1533
> Ahg952422 jgi|Araly1|952422|scaffold_7000004.1
Length=391
Score = 99.0 bits (53), Expect = 1e-19
Identities = 168/222 (76%), Gaps = 13/222 (6%)
Strand=Plus/Plus
Query 153 TTTCCCTAAAGG-TTTCATTTTTGGTACCGCAACTGCTGCTTTTCAGGTTGAAGGAGCTG 211
|||||| ||||| |||| | ||||| || || | |||||| ||||||||||||||||| |
Sbjct 138 TTTCCC-AAAGGCTTTC-TCTTTGGCACGGCCAGTGCTGCGTTTCAGGTTGAAGGAGCCG 195
Query 212 TA-AATGAAGGATGTAGAGGTCCAAGCATGTGGGACGTATACACCAAGAAAT-TCCCACA 269
|| || |||| |||||||| || ||| |||||||| | ||| | ||||| | ||
Sbjct 196 TAGAA-GAAGCTTGTAGAGGACCGAGCGTGTGGGACATCTACTGTAGGAAATAT-GCA-T 252
Query 270 T-AAATGTAATTATC-ACAATGCCGACGTTG-CTGTCGATTTCTACCATCGTTACAAGGA 326
| | ||| | | | | || | ||| || | | | |||||||||||||||||||||||
Sbjct 253 TCAGATG-CAGTGGCGATAACGGCGATGTGGCCACT-GATTTCTACCATCGTTACAAGGA 310
Query 327 AGATATCAAGTTGATGAAAAATCTGAACACTGATGGCTTTAG 368
|||||| || || ||||| ||| ||||| | || | ||||||
Sbjct 311 AGATATTAAATTAATGAAGAATTTGAACTCAGACGCCTTTAG 352
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70543133740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5