BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75960.1
Length=1842
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339769 jgi|Araly1|339769|fgenesh1_pg.C_scaffold_2001868 2351 0.0
Ahg488489 jgi|Araly1|488489|fgenesh2_kg.6__1623__AT5G16370.1 1253 0.0
> Ahg339769 jgi|Araly1|339769|fgenesh1_pg.C_scaffold_2001868
Length=2112
Score = 2351 bits (1273), Expect = 0.0
Identities = 1544/1675 (92%), Gaps = 18/1675 (1%)
Strand=Plus/Plus
Query 121 TCACATTGTGGTCACTCGAAAAGAGCTAAAGAAAATGGA-AGATTTGAAGCCAAGTGCCG 179
||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||
Sbjct 450 TCACATTGTGGTCACTCGACAAGAGCTAAAGAAAATGGAGGGA-TTGAAGCCAAGTGCCG 508
Query 180 CTAACTCGTTACCATTGACACTGTTAGGCTTTCTTGAGAGAGCAGCCACCGTGTATGGAG 239
| ||||||| ||| || || | |||||||||||||||||| ||||| |||||||||||||
Sbjct 509 CAAACTCGTCACCGTTAACGCCGTTAGGCTTTCTTGAGAGGGCAGCGACCGTGTATGGAG 568
Query 240 ACTGTACCTCCATCGTTTACGGCAATTCCACCGTGTACACATGGCGA-GAAACGAATCAC 298
||||||||||||||||||||||||| ||| ||||||||||||||| | |||||||||| |
Sbjct 569 ACTGTACCTCCATCGTTTACGGCAACTCCGCCGTGTACACATGGC-AGGAAACGAATCTC 627
Query 299 CGTTGCCTCTGCGTCGCGTCTGCTCTGTCTTCCATTGGAAT-AGGAAGATCCGACGTTGT 357
||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 628 CGTTGCCTCCGCGTCGCGTCTGCTCTGTCTTCCATTGGAATCA-GAAGATCCGACGTTGT 686
Query 358 CTCTGTCCTATCTGCTAATACTCCGGAAATGTACGAGCTCCAGTTTTCCGTTCCGATGTC 417
|||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct 687 CTCTGTCCTATCTGCTAACACTCCGGAGATGTACGAGCTCCAGTTCGCCGTTCCGATGTG 746
Query 418 TGGCGCGATCCTTAACAACATCAATACCCGCCTCGACGCGCGAACCGTCTCTGTTCTTCT 477
|||||| |||||||||||| |||| || || || || || | ||||||||||||||||||
Sbjct 747 TGGCGCAATCCTTAACAACCTCAACACGCGTCTTGATGCACAAACCGTCTCTGTTCTTCT 806
Query 478 CCGCCATTGCGAGTCTAAGCTGCTCTTCGTCGACTTCTTTTACTCCGATCTCGCTGTCGA 537
|||||||||||||||||||||||||||||||||| | ||||||||||||||||| || ||
Sbjct 807 CCGCCATTGCGAGTCTAAGCTGCTCTTCGTCGACGTGTTTTACTCCGATCTCGCCGTAGA 866
Query 538 AGCGATCACGATGTTGCTCAATCCGCCGATTCTCGTCCTAATCGCCAATGAGGAGGAGGA 597
||||||| ||| |||||||||||||||||||||||||||||||| | ||| |||| |
Sbjct 867 AGCGATCGCGACGTTGCTCAATCCGCCGATTCTCGTCCTAATCG-C--TGACCAGGA-G- 921
Query 598 AGAAGGAGGAGCTGAAGTAACGGAGCGTTCAAAATTCTGTTACTTGTACAGTGATCTAAT 657
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 922 -GAAGGAGGAGCTGTAGTGACGGAGCGTTCAAAATTCTGTTACTTGTACAGTGATCTAGT 980
Query 658 CACTAGAGGGAATCCGGATTTTAAATGGATCCGACCCGGAAGTGAATGGGACCCGATTGT 717
|| ||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 981 CAAGAGAGGCAATCCGGATTTTAAATGGATCCGACCCGAAAGCGAATGGGACCCGATTGT 1040
Query 718 GGTCAATTACACATCAGGTACGACGTCGTCTCCTAAAGGAGTGGTTCATTGCCACAGGGG 777
|||||| || ||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1041 GGTCAACTATACATCCGGTACGACGTCGTCTCCTAAAGGCGTGGTTCATTGCCACAGGGG 1100
Query 778 TATATTCGTCATGACGCTTGATTCCCTAACCGATTGGGCCGTACCGAAAACCCCGGTTTA 837
||| ||||||||| |||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1101 TATTTTCGTCATGGCGCTTGATTCTTTAACCGATTGGGCCGTACCGAAAAATCCGGTTTA 1160
Query 838 CTTATGGACCTTACCGATATTTCACGCCAACGGTTGGACCTATCCATGGGGAATCGCCGC 897
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1161 CTTATGGACCTTACCGATATTTCACGCTAACGGTTGGACCTATCCATGGGGAATCGCCGC 1220
Query 898 CGTCGGAGGAACTAACGTCTGTGTGCGTAAACTCCACGCGCCGTCAATATACCATCTAAT 957
|||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||
Sbjct 1221 CGTCGGAGGAACTAACGTCTGTGTGCGTAAACTCCACGCGCCGTTAATCTACCGTCTAAT 1280
Query 958 CCGTGATCACGGCGTGACTCACATGTACGGCGCACCAATAGTGCTTCAGATTCTATCGGC 1017
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1281 CCGTGATCACGGCGTGACTCACATGTGCGGCGCACCAATATTGCTTCAGATTCTATCGGC 1340
Query 1018 GAGTCAAGAATCTGATCAGCCTCTTAAGAGTCCGGTCAATTTCTTAACCGCCGGTTCTTC 1077
|||||||||||||| ||||||||||||| |||||||| ||||||||||||||||| |
Sbjct 1341 AAGTCAAGAATCTGAACAGCCTCTTAAGAACCCGGTCAAATTCTTAACCGCCGGTTCGGC 1400
Query 1078 TCCGCCAGCTACGGTGCTTCTCCGCGCCGAGTCTCTAGGTTTCATCGTCAGTCACGGTTA 1137
|||||| ||||||||||| ||||||||||| |||||||||||| ||||||| ||||||||
Sbjct 1401 TCCGCCGGCTACGGTGCTCCTCCGCGCCGAATCTCTAGGTTTCTTCGTCAGCCACGGTTA 1460
Query 1138 CGGATTAACGGAGACAGCCGGTGTGATCGTCTCCTGCGCGTGGAAGCCAAACTGGAATCG 1197
|||||||||||||||||| ||||||||| |||||||||||||||| ||||| ||||||||
Sbjct 1461 CGGATTAACGGAGACAGCTGGTGTGATCATCTCCTGCGCGTGGAACCCAAATTGGAATCG 1520
Query 1198 GTTACCGGCGAGTGATCAAGCGCA-ATTGAAATCACGGCAAGGAGTGAGAACCGTCGGAT 1256
|||||||||||||| |||||| | |||||||||||||||||||||||||||||| ||||
Sbjct 1521 ATTACCGGCGAGTGACCAAGCG-AGATTGAAATCACGGCAAGGAGTGAGAACCGTTGGAT 1579
Query 1257 TTAGCGAAATCGATGTAGTGGATCCAGAATCAGGTCGGAGCGTGGAGAGAGACGGAGAAA 1316
|||||||||||||||||||||||| |||||| |||||||||||||||||||| |||| ||
Sbjct 1580 TTAGCGAAATCGATGTAGTGGATCGAGAATCGGGTCGGAGCGTGGAGAGAGATGGAGCAA 1639
Query 1317 CAGTCGGAGAAATAGTGTTGAGAGGGAGTTCAATCATGCTCGGATACTTAAAAAATCCGA 1376
|| |||||||||||| ||| |||||||||||||||||||| || ||||| ||| ||||||
Sbjct 1640 CATTCGGAGAAATAGCGTTAAGAGGGAGTTCAATCATGCTTGGTTACTTGAAAGATCCGA 1699
Query 1377 TCGGAACTCAAAATTCGTTTAAAAACGGGTGGTTCTTCACCGGAGACCTCGGTGTGATTC 1436
||||||||||||| |||||||| ||||| |||||||||||||||||| ||||||||||||
Sbjct 1700 TCGGAACTCAAAAATCGTTTAAGAACGGATGGTTCTTCACCGGAGACGTCGGTGTGATTC 1759
Query 1437 ACGGGGATGGTTACTTAGAGATTAAAGATAGATCGAAAGATGTGATTATTTCAGGAGGAG 1496
|||| ||||||||||||||||| |||||| |||| |||||||||||||||||||||||||
Sbjct 1760 ACGGAGATGGTTACTTAGAGATCAAAGATCGATCAAAAGATGTGATTATTTCAGGAGGAG 1819
Query 1497 AGAATGTGAGTAGTGTGGAAGTGGAGGCGGTGTTGTACACGAATCCGGCGGTGAATGAAG 1556
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1820 AGAATGTGAGCAGTGTGGAAGTGGAGGCGGTGTTGTACACAAATCCGGCGGTGAATGAAG 1879
Query 1557 CGGCGGTGGTGGCTAGACCTGACGAGTTTTGGGGAGAGACGCCGTGTGCTTTTGTTAGTT 1616
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1880 CGGCGGTGGTGGCTAGACCTGACGAGTTTTGGGGAGAGACGCCGTGTGCTTTTGTGAGTT 1939
Query 1617 TAAAACCCGGGTTGACCCGGAAACCAACGGATAAGGAGATTATAGAGTATTGCAA-ATAT 1675
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | |
Sbjct 1940 TAAAACCCGGGTTGACCCGGAAACCCACGGATAAGGAGATTATTGAGTATTGCAAGA-AG 1998
Query 1676 AAAATGCCACGTTACATGGCT-CCTAAAACGGTCTCGTTTCTTGAAGAGTTACCAAAGAC 1734
|| |||||||||||||||| | |||||||| || ||||||||||||||||||||||||||
Sbjct 1999 AAGATGCCACGTTACATGG-TGCCTAAAACTGTGTCGTTTCTTGAAGAGTTACCAAAGAC 2057
Query 1735 TTCCACTGGGAAGATTATAAAGTCATTGCTTAAAGAGATTGCCAAAAACATGTAA 1789
||| || || ||||||| ||||| |||||||||||||||||||||||| ||||||
Sbjct 2058 TTCTACAGGAAAGATTACAAAGTTATTGCTTAAAGAGATTGCCAAAAAAATGTAA 2112
> Ahg488489 jgi|Araly1|488489|fgenesh2_kg.6__1623__AT5G16370.1
Length=1735
Score = 1253 bits (678), Expect = 0.0
Identities = 1345/1663 (81%), Gaps = 62/1663 (4%)
Strand=Plus/Plus
Query 155 ATGGAAGATTTGAAGCCAAGTGCCGCTAACTCGTTACCATTGACACTGTTAGGCTTTCTT 214
||||| ||| |||||||| ||||||| |||||| || ||||| | | |||| |||||
Sbjct 3 ATGGAGGATATGAAGCCATGTGCCGCAAACTCGCCGCCGTTGACCCCGATAGG-ATTCTT 61
Query 215 -GAGAGAGCAGCCACCGTGTATGGAGACTGTACCTCCATCGTTTACGGCAA-TTCCACCG 272
|||||||| |||||||| || || ||||||||||||||||||||||| || | |||||
Sbjct 62 AGAGAGAGCCGCCACCGTTTACGGTGACTGTACCTCCATCGTTTACGG-AACTAACACCG 120
Query 273 TGTACACATGGCGAGAAACGAATCACCGTTGCCTCTGCGTCGCGTCTGCTCTGTCTTCCA 332
| ||||| ||||| ||||| || | |||||||||| ||||||||||| |||| ||||| |
Sbjct 121 TTTACACGTGGCGTGAAACAAACCTCCGTTGCCTCCGCGTCGCGTCTTCTCTATCTTCAA 180
Query 333 TTGGAATAGGAAGATCCGACGTTGTCTCTGTCCTATCTGCTAATACTCCGGAAATGTACG 392
| || || || || |||||||| |||||||| || ||| | |||||||||| |||||||
Sbjct 181 TCGGGATCGGCAGGTCCGACGTCGTCTCTGTTCTCTCTCCCAATACTCCGGCGATGTACG 240
Query 393 AGCTCCAGTTTTCCGTTCCGATGTCTGGCGCGATCCTTAACAACATCAATACCCGCCTCG 452
|||||||||| | ||||| ||||| ||||| ||||| |||||| |||| || |||||||
Sbjct 241 AGCTCCAGTTCGCTGTTCCCATGTCCGGCGCAATCCTCAACAACGTCAACACACGCCTCG 300
Query 453 ACGCGCGAACCGTCTCTGTTCTTCTCCGCCA-T-TGCGAGTCTAAGCTGCTCTTCGTCGA 510
|||| || |||||||||||||||||||| || | || || |||||||| |||||||||||
Sbjct 301 ACGCACGCACCGTCTCTGTTCTTCTCCGTCACTGTG-GA-TCTAAGCTTCTCTTCGTCGA 358
Query 511 CTTCTTTTAC-TCCGATCTCGCTGTCGAAGCGATCACGATGTTG-C-TC-AATCCGCCGA 566
| |||| | | | |||||| || |||||||||||| ||||| || | | |||| ||||
Sbjct 359 CGTCTTCTCCGT-CGATCTTGCCGTCGAAGCGATCTCGATGATGACGACTGATCCACCGA 417
Query 567 TTCTCGTCCTAATCGCCAATGAGGAGGAGGAAGAAGGAGGA-GCTGAAGTAACGGAGCGT 625
|||||||| | ||||| || | || ||||| | ||| || ||||| || |||| |||
Sbjct 418 TTCTCGTCTTCATCGCTGATAAAGAAGAGGACGGAGG-CGATGCTGACGTGGCGGATCGT 476
Query 626 TCAAAATTCTGTTAC-TTGTACAG-TGATCTAAT-CACTAGAGG-GAATCCGGATTTTAA 681
| |||||| |||| | ||| | |||||| || || |||||| | |||||| ||| ||
Sbjct 477 ACCAAATTCAATTACACT-TAC-GATGATCTTATCCA-TAGAGGTG-ATCCGGGTTTCAA 532
Query 682 ATGGATCCGACCCGGAAGTGAATGGGACCCGATTGTGGTCAATTACACATCAGGTACGAC 741
|||||||||||||| |||||||||||| ||| ||||| | |||||||| || ||||||||
Sbjct 533 ATGGATCCGACCCGAAAGTGAATGGGATCCGGTTGTGTTAAATTACACTTCCGGTACGAC 592
Query 742 GTCGTCTCCTAAAGGAGTGGTTCATTGCCACAGGGGTATATTCGTCATGACGCTTGATTC 801
||| |||||||||||||||| || || ||||| || || ||||| ||| | |||||||
Sbjct 593 TTCGGCTCCTAAAGGAGTGGTACACTGTCACAGAGGAATTTTCGTAATGTCAATTGATTC 652
Query 802 CCTAACCGATTGGGCCGTACCGAAAACCCCGGTTTACTTATGGACCT-TACCGATATTTC 860
|| | ||||||| |||||||||||| |||||||||||||||| || ||||||||||||
Sbjct 653 ACTTATCGATTGGACCGTACCGAAAAATCCGGTTTACTTATGGA-CTCTACCGATATTTC 711
Query 861 ACGCCAACGGTTGGACCTATCCATGGGGAATCGCCGCCGTCGGAGGAACTAACGTCTGTG 920
|||| ||||| |||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 712 ACGCTAACGGGTGGAGTTATCCATGGGGAATCGCCGCCGTCGGAGGAACTAACGTATGTT 771
Query 921 TGCGTAAACTCCACGCGCCGTCAATATACCATCTAATCCGTGATCACGGCGTGACTCACA 980
|||||||| || ||||||||| ||| |||| | | |||||||| |||||||| || ||||
Sbjct 772 TGCGTAAATTCGACGCGCCGTTAATCTACCGTTTGATCCGTGAGCACGGCGTTACACACA 831
Query 981 TGTACGGCGCACCAATAGTGCTTCAGAT-TCTATCGGCGAGTCAAGAATCTGATCAGCCT 1039
||| || || || | ||||| | || | |||| |||| |||||||||| | | ||
Sbjct 832 TGTGTGGAGCTCCGGTGGTGCTAAACATGT-TATCAGCGACTCAAGAATCTCA--A-CCG 887
Query 1040 CTT-AAGAGTCCGGTCAATTTCTTAACCGCCGGTTCTTCTCCGCCAGCTACGGTGCTTCT 1098
|| || |||| ||||| | |||||||||||| || | || ||||| | || || ||
Sbjct 888 -TTGAACCGTCCCGTCAACATATTAACCGCCGGTGCTCCACCTCCAGCCGCCGTTCTCCT 946
Query 1099 CCGCGCCGAGTCTCTAGGTTTCATCG-TCAGTCACGGTTACGGATTAACGGAGACAGCCG 1157
||| ||||| || | || ||| | | |||||||||| |||||||||||||| || ||||
Sbjct 947 CCGAGCCGAATCAATCGGATTCGT-GATCAGTCACGGATACGGATTAACGGAAACCGCCG 1005
Query 1158 G-TGTGATCGTCTCCTGCGCGTGGAAGCCAAACTGGAATCGGT-TACCGGCGAGTGATCA 1215
| | | | |||||| ||||||||||||||| | ||||| || | |||||||||| ||||
Sbjct 1006 GAT-TAAACGTCTCATGCGCGTGGAAGCCACAGTGGAACCG-TCTACCGGCGAGCGATCG 1063
Query 1216 AGCGCAA-TTGAAATCACGGCAAGGAGTGAGAACCGTCGGATTTAGC-GAAATCGATGTA 1273
|||| | ||||| |||||||||||||||||||||||||||||| | |||||||| ||
Sbjct 1064 AGCG-AGGTTGAAGGCACGGCAAGGAGTGAGAACCGTCGGATTTA-CAGAAATCGACGTG 1121
Query 1274 GTGGATCCAGAATCAGGTCGGAGCGTGGAGAGAGACGGAGAAACAGTCGGAGAAATAGTG 1333
|||||||| ||||| ||| |||||| |||||| |||||||||| ||||||||||| ||
Sbjct 1122 GTGGATCCTGAATCGGGTTTGAGCGTTGAGAGAAACGGAGAAACTGTCGGAGAAATTGT- 1180
Query 1334 T-TGAGAGGGAGTTCAATCATGCTCGGATACTTAAAAAATCCGATCGGAACTCA-AAATT 1391
| ||||||| || || |||||||| || ||||| ||| ||||||||||||| | |||
Sbjct 1181 TATGAGAGGAAGCTCGATCATGCTTGGTTACTTGAAAGATCCGATCGGAACAGAGAAAG- 1239
Query 1392 CGTTTAAA-AACGGGTGGTTCTT-CACCGGAGACCTCGGTGTGATTCACGGGGATGGTTA 1449
| |||||| ||||||||||| || ||||||||| | |||||||||||| ||||| ||
Sbjct 1240 C-TTTAAAGAACGGGTGGTT-TTACACCGGAGATGTTGGTGTGATTCACTCCGATGGATA 1297
Query 1450 CTTAGAGATTAAAGATAGATCGAAAGATGTGATTATTTCAGGAGGAGAGAATGTGAGTAG 1509
||||||||||||||||||||||||||| | || || | ||||| || |||||||||||
Sbjct 1298 TTTAGAGATTAAAGATAGATCGAAAGATATAATCATAACGGGAGGTGAAAATGTGAGTAG 1357
Query 1510 TGTGGAAGTGGAGGCGGTGTTGTACACGAATCCGGCGGTGAATGAAGCGGCGGTGGTGGC 1569
||| || || || ||||| ||||| |||||||||||||||||||||| |||||||||||
Sbjct 1358 TGTTGAGGTTGAAGCGGTTTTGTATACGAATCCGGCGGTGAATGAAGTAGCGGTGGTGGC 1417
Query 1570 TAGACCTGACGAGTTTTGGGGAGAGACGCCGTGTGCTTTTGTTAGTTT-AAAACCCGGGT 1628
|||||||| |||||||||||||||||||||||||| ||||| ||||| |||| ||||
Sbjct 1418 GAGACCTGATGAGTTTTGGGGAGAGACGCCGTGTGCGTTTGTGAGTTTGAAAAGT-GGGT 1476
Query 1629 TGACCCGGAAACCAACGGATAAGGAGATT-ATAGAGTATTGCAA-ATATAAAATGCC-AC 1685
||| |||| ||| ||||| ||||| || ||||||||||| | | | || ||||| |
Sbjct 1477 TGAGTCGGAGACCGACGGAGGAGGAG-TTGATAGAGTATTGTAGGA-AGAAGATGCCGAG 1534
Query 1686 GTTACATGGCTCCTAAAACGGTCTCGTTTCTTGAAGAGTTACCAAAGACTTCCACTGGGA 1745
|| | |||| |||||||||| | |||||| | || ||| | || |||||||| || ||||
Sbjct 1535 GT-ATATGGTTCCTAAAACGATGTCGTTTGTGGATGAGGTGCCTAAGACTTCGACAGGGA 1593
Query 1746 AGATTATAAAGTCATTG--CTTAAAGAGATTGCCAAAAACATG 1786
|| |||| |||| ||| |||| ||||||||| || || |||
Sbjct 1594 AGGTTATGAAGT--TTGTACTTAGAGAGATTGCGAAGAAGATG 1634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69171884920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5