BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G75960.1 Length=1842 Score E Sequences producing significant alignments: (Bits) Value Ahg339769 jgi|Araly1|339769|fgenesh1_pg.C_scaffold_2001868 2351 0.0 Ahg488489 jgi|Araly1|488489|fgenesh2_kg.6__1623__AT5G16370.1 1253 0.0 > Ahg339769 jgi|Araly1|339769|fgenesh1_pg.C_scaffold_2001868 Length=2112 Score = 2351 bits (1273), Expect = 0.0 Identities = 1544/1675 (92%), Gaps = 18/1675 (1%) Strand=Plus/Plus Query 121 TCACATTGTGGTCACTCGAAAAGAGCTAAAGAAAATGGA-AGATTTGAAGCCAAGTGCCG 179 ||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||| Sbjct 450 TCACATTGTGGTCACTCGACAAGAGCTAAAGAAAATGGAGGGA-TTGAAGCCAAGTGCCG 508 Query 180 CTAACTCGTTACCATTGACACTGTTAGGCTTTCTTGAGAGAGCAGCCACCGTGTATGGAG 239 | ||||||| ||| || || | |||||||||||||||||| ||||| ||||||||||||| Sbjct 509 CAAACTCGTCACCGTTAACGCCGTTAGGCTTTCTTGAGAGGGCAGCGACCGTGTATGGAG 568 Query 240 ACTGTACCTCCATCGTTTACGGCAATTCCACCGTGTACACATGGCGA-GAAACGAATCAC 298 ||||||||||||||||||||||||| ||| ||||||||||||||| | |||||||||| | Sbjct 569 ACTGTACCTCCATCGTTTACGGCAACTCCGCCGTGTACACATGGC-AGGAAACGAATCTC 627 Query 299 CGTTGCCTCTGCGTCGCGTCTGCTCTGTCTTCCATTGGAAT-AGGAAGATCCGACGTTGT 357 ||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 628 CGTTGCCTCCGCGTCGCGTCTGCTCTGTCTTCCATTGGAATCA-GAAGATCCGACGTTGT 686 Query 358 CTCTGTCCTATCTGCTAATACTCCGGAAATGTACGAGCTCCAGTTTTCCGTTCCGATGTC 417 |||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||| Sbjct 687 CTCTGTCCTATCTGCTAACACTCCGGAGATGTACGAGCTCCAGTTCGCCGTTCCGATGTG 746 Query 418 TGGCGCGATCCTTAACAACATCAATACCCGCCTCGACGCGCGAACCGTCTCTGTTCTTCT 477 |||||| |||||||||||| |||| || || || || || | |||||||||||||||||| Sbjct 747 TGGCGCAATCCTTAACAACCTCAACACGCGTCTTGATGCACAAACCGTCTCTGTTCTTCT 806 Query 478 CCGCCATTGCGAGTCTAAGCTGCTCTTCGTCGACTTCTTTTACTCCGATCTCGCTGTCGA 537 |||||||||||||||||||||||||||||||||| | ||||||||||||||||| || || Sbjct 807 CCGCCATTGCGAGTCTAAGCTGCTCTTCGTCGACGTGTTTTACTCCGATCTCGCCGTAGA 866 Query 538 AGCGATCACGATGTTGCTCAATCCGCCGATTCTCGTCCTAATCGCCAATGAGGAGGAGGA 597 ||||||| ||| |||||||||||||||||||||||||||||||| | ||| |||| | Sbjct 867 AGCGATCGCGACGTTGCTCAATCCGCCGATTCTCGTCCTAATCG-C--TGACCAGGA-G- 921 Query 598 AGAAGGAGGAGCTGAAGTAACGGAGCGTTCAAAATTCTGTTACTTGTACAGTGATCTAAT 657 ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| | Sbjct 922 -GAAGGAGGAGCTGTAGTGACGGAGCGTTCAAAATTCTGTTACTTGTACAGTGATCTAGT 980 Query 658 CACTAGAGGGAATCCGGATTTTAAATGGATCCGACCCGGAAGTGAATGGGACCCGATTGT 717 || ||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 981 CAAGAGAGGCAATCCGGATTTTAAATGGATCCGACCCGAAAGCGAATGGGACCCGATTGT 1040 Query 718 GGTCAATTACACATCAGGTACGACGTCGTCTCCTAAAGGAGTGGTTCATTGCCACAGGGG 777 |||||| || ||||| ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1041 GGTCAACTATACATCCGGTACGACGTCGTCTCCTAAAGGCGTGGTTCATTGCCACAGGGG 1100 Query 778 TATATTCGTCATGACGCTTGATTCCCTAACCGATTGGGCCGTACCGAAAACCCCGGTTTA 837 ||| ||||||||| |||||||||| |||||||||||||||||||||||| |||||||| Sbjct 1101 TATTTTCGTCATGGCGCTTGATTCTTTAACCGATTGGGCCGTACCGAAAAATCCGGTTTA 1160 Query 838 CTTATGGACCTTACCGATATTTCACGCCAACGGTTGGACCTATCCATGGGGAATCGCCGC 897 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1161 CTTATGGACCTTACCGATATTTCACGCTAACGGTTGGACCTATCCATGGGGAATCGCCGC 1220 Query 898 CGTCGGAGGAACTAACGTCTGTGTGCGTAAACTCCACGCGCCGTCAATATACCATCTAAT 957 |||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||| Sbjct 1221 CGTCGGAGGAACTAACGTCTGTGTGCGTAAACTCCACGCGCCGTTAATCTACCGTCTAAT 1280 Query 958 CCGTGATCACGGCGTGACTCACATGTACGGCGCACCAATAGTGCTTCAGATTCTATCGGC 1017 |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| Sbjct 1281 CCGTGATCACGGCGTGACTCACATGTGCGGCGCACCAATATTGCTTCAGATTCTATCGGC 1340 Query 1018 GAGTCAAGAATCTGATCAGCCTCTTAAGAGTCCGGTCAATTTCTTAACCGCCGGTTCTTC 1077 |||||||||||||| ||||||||||||| |||||||| ||||||||||||||||| | Sbjct 1341 AAGTCAAGAATCTGAACAGCCTCTTAAGAACCCGGTCAAATTCTTAACCGCCGGTTCGGC 1400 Query 1078 TCCGCCAGCTACGGTGCTTCTCCGCGCCGAGTCTCTAGGTTTCATCGTCAGTCACGGTTA 1137 |||||| ||||||||||| ||||||||||| |||||||||||| ||||||| |||||||| Sbjct 1401 TCCGCCGGCTACGGTGCTCCTCCGCGCCGAATCTCTAGGTTTCTTCGTCAGCCACGGTTA 1460 Query 1138 CGGATTAACGGAGACAGCCGGTGTGATCGTCTCCTGCGCGTGGAAGCCAAACTGGAATCG 1197 |||||||||||||||||| ||||||||| |||||||||||||||| ||||| |||||||| Sbjct 1461 CGGATTAACGGAGACAGCTGGTGTGATCATCTCCTGCGCGTGGAACCCAAATTGGAATCG 1520 Query 1198 GTTACCGGCGAGTGATCAAGCGCA-ATTGAAATCACGGCAAGGAGTGAGAACCGTCGGAT 1256 |||||||||||||| |||||| | |||||||||||||||||||||||||||||| |||| Sbjct 1521 ATTACCGGCGAGTGACCAAGCG-AGATTGAAATCACGGCAAGGAGTGAGAACCGTTGGAT 1579 Query 1257 TTAGCGAAATCGATGTAGTGGATCCAGAATCAGGTCGGAGCGTGGAGAGAGACGGAGAAA 1316 |||||||||||||||||||||||| |||||| |||||||||||||||||||| |||| || Sbjct 1580 TTAGCGAAATCGATGTAGTGGATCGAGAATCGGGTCGGAGCGTGGAGAGAGATGGAGCAA 1639 Query 1317 CAGTCGGAGAAATAGTGTTGAGAGGGAGTTCAATCATGCTCGGATACTTAAAAAATCCGA 1376 || |||||||||||| ||| |||||||||||||||||||| || ||||| ||| |||||| Sbjct 1640 CATTCGGAGAAATAGCGTTAAGAGGGAGTTCAATCATGCTTGGTTACTTGAAAGATCCGA 1699 Query 1377 TCGGAACTCAAAATTCGTTTAAAAACGGGTGGTTCTTCACCGGAGACCTCGGTGTGATTC 1436 ||||||||||||| |||||||| ||||| |||||||||||||||||| |||||||||||| Sbjct 1700 TCGGAACTCAAAAATCGTTTAAGAACGGATGGTTCTTCACCGGAGACGTCGGTGTGATTC 1759 Query 1437 ACGGGGATGGTTACTTAGAGATTAAAGATAGATCGAAAGATGTGATTATTTCAGGAGGAG 1496 |||| ||||||||||||||||| |||||| |||| ||||||||||||||||||||||||| Sbjct 1760 ACGGAGATGGTTACTTAGAGATCAAAGATCGATCAAAAGATGTGATTATTTCAGGAGGAG 1819 Query 1497 AGAATGTGAGTAGTGTGGAAGTGGAGGCGGTGTTGTACACGAATCCGGCGGTGAATGAAG 1556 |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1820 AGAATGTGAGCAGTGTGGAAGTGGAGGCGGTGTTGTACACAAATCCGGCGGTGAATGAAG 1879 Query 1557 CGGCGGTGGTGGCTAGACCTGACGAGTTTTGGGGAGAGACGCCGTGTGCTTTTGTTAGTT 1616 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1880 CGGCGGTGGTGGCTAGACCTGACGAGTTTTGGGGAGAGACGCCGTGTGCTTTTGTGAGTT 1939 Query 1617 TAAAACCCGGGTTGACCCGGAAACCAACGGATAAGGAGATTATAGAGTATTGCAA-ATAT 1675 ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | | Sbjct 1940 TAAAACCCGGGTTGACCCGGAAACCCACGGATAAGGAGATTATTGAGTATTGCAAGA-AG 1998 Query 1676 AAAATGCCACGTTACATGGCT-CCTAAAACGGTCTCGTTTCTTGAAGAGTTACCAAAGAC 1734 || |||||||||||||||| | |||||||| || |||||||||||||||||||||||||| Sbjct 1999 AAGATGCCACGTTACATGG-TGCCTAAAACTGTGTCGTTTCTTGAAGAGTTACCAAAGAC 2057 Query 1735 TTCCACTGGGAAGATTATAAAGTCATTGCTTAAAGAGATTGCCAAAAACATGTAA 1789 ||| || || ||||||| ||||| |||||||||||||||||||||||| |||||| Sbjct 2058 TTCTACAGGAAAGATTACAAAGTTATTGCTTAAAGAGATTGCCAAAAAAATGTAA 2112 > Ahg488489 jgi|Araly1|488489|fgenesh2_kg.6__1623__AT5G16370.1 Length=1735 Score = 1253 bits (678), Expect = 0.0 Identities = 1345/1663 (81%), Gaps = 62/1663 (4%) Strand=Plus/Plus Query 155 ATGGAAGATTTGAAGCCAAGTGCCGCTAACTCGTTACCATTGACACTGTTAGGCTTTCTT 214 ||||| ||| |||||||| ||||||| |||||| || ||||| | | |||| ||||| Sbjct 3 ATGGAGGATATGAAGCCATGTGCCGCAAACTCGCCGCCGTTGACCCCGATAGG-ATTCTT 61 Query 215 -GAGAGAGCAGCCACCGTGTATGGAGACTGTACCTCCATCGTTTACGGCAA-TTCCACCG 272 |||||||| |||||||| || || ||||||||||||||||||||||| || | ||||| Sbjct 62 AGAGAGAGCCGCCACCGTTTACGGTGACTGTACCTCCATCGTTTACGG-AACTAACACCG 120 Query 273 TGTACACATGGCGAGAAACGAATCACCGTTGCCTCTGCGTCGCGTCTGCTCTGTCTTCCA 332 | ||||| ||||| ||||| || | |||||||||| ||||||||||| |||| ||||| | Sbjct 121 TTTACACGTGGCGTGAAACAAACCTCCGTTGCCTCCGCGTCGCGTCTTCTCTATCTTCAA 180 Query 333 TTGGAATAGGAAGATCCGACGTTGTCTCTGTCCTATCTGCTAATACTCCGGAAATGTACG 392 | || || || || |||||||| |||||||| || ||| | |||||||||| ||||||| Sbjct 181 TCGGGATCGGCAGGTCCGACGTCGTCTCTGTTCTCTCTCCCAATACTCCGGCGATGTACG 240 Query 393 AGCTCCAGTTTTCCGTTCCGATGTCTGGCGCGATCCTTAACAACATCAATACCCGCCTCG 452 |||||||||| | ||||| ||||| ||||| ||||| |||||| |||| || ||||||| Sbjct 241 AGCTCCAGTTCGCTGTTCCCATGTCCGGCGCAATCCTCAACAACGTCAACACACGCCTCG 300 Query 453 ACGCGCGAACCGTCTCTGTTCTTCTCCGCCA-T-TGCGAGTCTAAGCTGCTCTTCGTCGA 510 |||| || |||||||||||||||||||| || | || || |||||||| ||||||||||| Sbjct 301 ACGCACGCACCGTCTCTGTTCTTCTCCGTCACTGTG-GA-TCTAAGCTTCTCTTCGTCGA 358 Query 511 CTTCTTTTAC-TCCGATCTCGCTGTCGAAGCGATCACGATGTTG-C-TC-AATCCGCCGA 566 | |||| | | | |||||| || |||||||||||| ||||| || | | |||| |||| Sbjct 359 CGTCTTCTCCGT-CGATCTTGCCGTCGAAGCGATCTCGATGATGACGACTGATCCACCGA 417 Query 567 TTCTCGTCCTAATCGCCAATGAGGAGGAGGAAGAAGGAGGA-GCTGAAGTAACGGAGCGT 625 |||||||| | ||||| || | || ||||| | ||| || ||||| || |||| ||| Sbjct 418 TTCTCGTCTTCATCGCTGATAAAGAAGAGGACGGAGG-CGATGCTGACGTGGCGGATCGT 476 Query 626 TCAAAATTCTGTTAC-TTGTACAG-TGATCTAAT-CACTAGAGG-GAATCCGGATTTTAA 681 | |||||| |||| | ||| | |||||| || || |||||| | |||||| ||| || Sbjct 477 ACCAAATTCAATTACACT-TAC-GATGATCTTATCCA-TAGAGGTG-ATCCGGGTTTCAA 532 Query 682 ATGGATCCGACCCGGAAGTGAATGGGACCCGATTGTGGTCAATTACACATCAGGTACGAC 741 |||||||||||||| |||||||||||| ||| ||||| | |||||||| || |||||||| Sbjct 533 ATGGATCCGACCCGAAAGTGAATGGGATCCGGTTGTGTTAAATTACACTTCCGGTACGAC 592 Query 742 GTCGTCTCCTAAAGGAGTGGTTCATTGCCACAGGGGTATATTCGTCATGACGCTTGATTC 801 ||| |||||||||||||||| || || ||||| || || ||||| ||| | ||||||| Sbjct 593 TTCGGCTCCTAAAGGAGTGGTACACTGTCACAGAGGAATTTTCGTAATGTCAATTGATTC 652 Query 802 CCTAACCGATTGGGCCGTACCGAAAACCCCGGTTTACTTATGGACCT-TACCGATATTTC 860 || | ||||||| |||||||||||| |||||||||||||||| || |||||||||||| Sbjct 653 ACTTATCGATTGGACCGTACCGAAAAATCCGGTTTACTTATGGA-CTCTACCGATATTTC 711 Query 861 ACGCCAACGGTTGGACCTATCCATGGGGAATCGCCGCCGTCGGAGGAACTAACGTCTGTG 920 |||| ||||| |||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 712 ACGCTAACGGGTGGAGTTATCCATGGGGAATCGCCGCCGTCGGAGGAACTAACGTATGTT 771 Query 921 TGCGTAAACTCCACGCGCCGTCAATATACCATCTAATCCGTGATCACGGCGTGACTCACA 980 |||||||| || ||||||||| ||| |||| | | |||||||| |||||||| || |||| Sbjct 772 TGCGTAAATTCGACGCGCCGTTAATCTACCGTTTGATCCGTGAGCACGGCGTTACACACA 831 Query 981 TGTACGGCGCACCAATAGTGCTTCAGAT-TCTATCGGCGAGTCAAGAATCTGATCAGCCT 1039 ||| || || || | ||||| | || | |||| |||| |||||||||| | | || Sbjct 832 TGTGTGGAGCTCCGGTGGTGCTAAACATGT-TATCAGCGACTCAAGAATCTCA--A-CCG 887 Query 1040 CTT-AAGAGTCCGGTCAATTTCTTAACCGCCGGTTCTTCTCCGCCAGCTACGGTGCTTCT 1098 || || |||| ||||| | |||||||||||| || | || ||||| | || || || Sbjct 888 -TTGAACCGTCCCGTCAACATATTAACCGCCGGTGCTCCACCTCCAGCCGCCGTTCTCCT 946 Query 1099 CCGCGCCGAGTCTCTAGGTTTCATCG-TCAGTCACGGTTACGGATTAACGGAGACAGCCG 1157 ||| ||||| || | || ||| | | |||||||||| |||||||||||||| || |||| Sbjct 947 CCGAGCCGAATCAATCGGATTCGT-GATCAGTCACGGATACGGATTAACGGAAACCGCCG 1005 Query 1158 G-TGTGATCGTCTCCTGCGCGTGGAAGCCAAACTGGAATCGGT-TACCGGCGAGTGATCA 1215 | | | | |||||| ||||||||||||||| | ||||| || | |||||||||| |||| Sbjct 1006 GAT-TAAACGTCTCATGCGCGTGGAAGCCACAGTGGAACCG-TCTACCGGCGAGCGATCG 1063 Query 1216 AGCGCAA-TTGAAATCACGGCAAGGAGTGAGAACCGTCGGATTTAGC-GAAATCGATGTA 1273 |||| | ||||| |||||||||||||||||||||||||||||| | |||||||| || Sbjct 1064 AGCG-AGGTTGAAGGCACGGCAAGGAGTGAGAACCGTCGGATTTA-CAGAAATCGACGTG 1121 Query 1274 GTGGATCCAGAATCAGGTCGGAGCGTGGAGAGAGACGGAGAAACAGTCGGAGAAATAGTG 1333 |||||||| ||||| ||| |||||| |||||| |||||||||| ||||||||||| || Sbjct 1122 GTGGATCCTGAATCGGGTTTGAGCGTTGAGAGAAACGGAGAAACTGTCGGAGAAATTGT- 1180 Query 1334 T-TGAGAGGGAGTTCAATCATGCTCGGATACTTAAAAAATCCGATCGGAACTCA-AAATT 1391 | ||||||| || || |||||||| || ||||| ||| ||||||||||||| | ||| Sbjct 1181 TATGAGAGGAAGCTCGATCATGCTTGGTTACTTGAAAGATCCGATCGGAACAGAGAAAG- 1239 Query 1392 CGTTTAAA-AACGGGTGGTTCTT-CACCGGAGACCTCGGTGTGATTCACGGGGATGGTTA 1449 | |||||| ||||||||||| || ||||||||| | |||||||||||| ||||| || Sbjct 1240 C-TTTAAAGAACGGGTGGTT-TTACACCGGAGATGTTGGTGTGATTCACTCCGATGGATA 1297 Query 1450 CTTAGAGATTAAAGATAGATCGAAAGATGTGATTATTTCAGGAGGAGAGAATGTGAGTAG 1509 ||||||||||||||||||||||||||| | || || | ||||| || ||||||||||| Sbjct 1298 TTTAGAGATTAAAGATAGATCGAAAGATATAATCATAACGGGAGGTGAAAATGTGAGTAG 1357 Query 1510 TGTGGAAGTGGAGGCGGTGTTGTACACGAATCCGGCGGTGAATGAAGCGGCGGTGGTGGC 1569 ||| || || || ||||| ||||| |||||||||||||||||||||| ||||||||||| Sbjct 1358 TGTTGAGGTTGAAGCGGTTTTGTATACGAATCCGGCGGTGAATGAAGTAGCGGTGGTGGC 1417 Query 1570 TAGACCTGACGAGTTTTGGGGAGAGACGCCGTGTGCTTTTGTTAGTTT-AAAACCCGGGT 1628 |||||||| |||||||||||||||||||||||||| ||||| ||||| |||| |||| Sbjct 1418 GAGACCTGATGAGTTTTGGGGAGAGACGCCGTGTGCGTTTGTGAGTTTGAAAAGT-GGGT 1476 Query 1629 TGACCCGGAAACCAACGGATAAGGAGATT-ATAGAGTATTGCAA-ATATAAAATGCC-AC 1685 ||| |||| ||| ||||| ||||| || ||||||||||| | | | || ||||| | Sbjct 1477 TGAGTCGGAGACCGACGGAGGAGGAG-TTGATAGAGTATTGTAGGA-AGAAGATGCCGAG 1534 Query 1686 GTTACATGGCTCCTAAAACGGTCTCGTTTCTTGAAGAGTTACCAAAGACTTCCACTGGGA 1745 || | |||| |||||||||| | |||||| | || ||| | || |||||||| || |||| Sbjct 1535 GT-ATATGGTTCCTAAAACGATGTCGTTTGTGGATGAGGTGCCTAAGACTTCGACAGGGA 1593 Query 1746 AGATTATAAAGTCATTG--CTTAAAGAGATTGCCAAAAACATG 1786 || |||| |||| ||| |||| ||||||||| || || ||| Sbjct 1594 AGGTTATGAAGT--TTGTACTTAGAGAGATTGCGAAGAAGATG 1634 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69171884920 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5