BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75980.1
Length=1095
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476748 jgi|Araly1|476748|fgenesh2_kg.2__1878__AT1G75980.1 1201 0.0
> Ahg476748 jgi|Araly1|476748|fgenesh2_kg.2__1878__AT1G75980.1
Length=908
Score = 1201 bits (650), Expect = 0.0
Identities = 845/934 (90%), Gaps = 34/934 (4%)
Strand=Plus/Plus
Query 1 GTTTTTTCGCCGTCAAAGGTTAAACAGTCGAAACAATGGAGATTCTGAAGCTTGATGTAG 60
|||||| ||||||| ||||||||||| |||||||||||||||||| |||| ||| ||||
Sbjct 1 GTTTTTCCGCCGTCGAAGGTTAAACACTCGAAACAATGGAGATTCAAAAGCCTGAGGTAG 60
Query 61 CGAAGTTTCCAGAAATTGAGGATACAATCGAATTAACTAACCCAAA-GAGAAACGACGAA 119
||||| |||||||||||| ||||||||||||||||| || |||| |||| ||||||||
Sbjct 61 CGAAGAATCCAGAAATTGAAGATACAATCGAATTAACCAA-GCAAAGGAGACACGACGAA 119
Query 120 GTAGAAGATTGCGACGA-C--CAACAGAAGCAGCAGCTAGCTACACAAGAAGATGAAGAG 176
||||||||||||||||| | ||||| |||||||| | |||| |||||||| |||
Sbjct 120 GTAGAAGATTGCGACGAGCAACAACATAAGCAGCATCAAGCT---GAAGAAGAT---GAG 173
Query 177 GAAGACGAATTGAGAAAGCTTCTGCTTTCAGATATTGGAGAACTTCCGATTTCTCCTCCT 236
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 174 GAAGACGAATTGCGAAAGCTTCTGCTTTCAGATATTGGAGAGCTTCCGATTTCTCCTCCT 233
Query 237 TCAGCTACACAAGTCAATTTTGTTTCTTACTTCATCACAGATTTTACTAAATCGGGTCAT 296
|||| ||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct 234 TCAGGTACACAAGTCAATTTCGTTTCTTACTTCATTACAGATTTTACGAAATCGGGTCAT 293
Query 297 GATCAATATATTTACCGTCACGCTAATGGTTTGTGTGTAATTGGATTGGCTCCTACGCAT 356
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 294 GATCAATATATTTACCGTCACGCAAATGGTTTGTGTGTAATTGGATTGGCTCCTACGCAT 353
Query 357 ATAGCTTTTAAGGATGAAGGTGGAATCACTAGTGTCGATTTCAATGTTGGTAAGTCTGAT 416
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 354 ATAGCTTTTAAGGATGAAGGTGGAATCACTAACGTCGATTTCAATGTCGGTAAGTCTGAT 413
Query 417 CGTAGCGTCTTGAAAGTCTCCGGCAAGCGTAAAAAGAATGCGTTGCGCTCTGAATCGAAT 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 CGTAGCGTCTTGAAAGTCTCCGGCAAGCGTAAAAAGAATGCGTTGCGCTCTGAATCGAAT 473
Query 477 ACAGCATTGTGCAAAGTTTCCACTGCAAAAGATACTTACATTGTTAGGTGCTGCGTTAAA 536
||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||
Sbjct 474 ACAGCATTGTGCAAAGTTTCCACTGCAAAAGATTCCTACATTGTGAGGTGCTGCGTTAAA 533
Query 537 GGCTCTCTCTTGGAGGTCAACGAGAGATTGATTAAGCAACCAGAGCTTCTTAATTCAACG 596
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 534 GGCTCTCTCTTGGAGGTCAACGAGAGATTAATTAAGCAACCAGAGCTTCTTAATTCATCG 593
Query 597 GCTGACCGCGAAGGGTATATTGCGATAATTATGCCAAGACCTGCAGATTGGACCAAAAAC 656
|||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 594 GCTGACCGGGAAGGGTATATTGCGATAATCATGCCAAGACCTTCAGATTGGACCAAAAAC 653
Query 657 AAGGAGTCACTGATAACTCTGGAGGAATATAAAGAAAAGAAAGAAATGTC-TTTATGATC 715
||||| ||||||||||||||||||||||||||| ||||||||||||| || |||||||||
Sbjct 654 AAGGAATCACTGATAACTCTGGAGGAATATAAACAAAAGAAAGAAAT-TCCTTTATGATC 712
Query 716 TGAAGCTGATGATGATTAGGGCCGTTAGGCATAAGTCAAATTTGGT-GAAGAACTTTGAA 774
||| || |||||||||||||||| |||||| ||||||| ||| ||| || | | ||||||
Sbjct 713 TGATGCAGATGATGATTAGGGCCATTAGGCTTAAGTCAGATTAGGTTGA-GTATTTTGAA 771
Query 775 GGTCTTTTGCAGTCTAATC-GTTTGAAGCTCTACAATATTTATCAACTGTTGTGTTGTGT 833
| |||||||| |||||||| ||| |||| |||||||||||| | | ||||||||||||||
Sbjct 772 GCTCTTTTGCGGTCTAATCTGTT-GAAGGTCTACAATATTT-TGA-CTGTTGTGTTGTGT 828
Query 834 TTTGGCTGACAAAACTA-TTTTGCAAGCAATACAATTTTGCAATGTTCTTCATGAAACCT 892
|||||||||||||| || ||||| | | | | |||||||||||||||||||
Sbjct 829 TTTGGCTGACAAAA-TAATTTTGG--G---T-C--T-----AATGTTCTTCATGAAACCT 874
Query 893 TTTTACATTGCTGTATTAGAAAACACGAGACTAC 926
|||||| || ||||| ||||||||||||| |||
Sbjct 875 TTTTACTTTCCTGTACCAGAAAACACGAGATTAC 908
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40791521190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5