BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G75980.1 Length=1095 Score E Sequences producing significant alignments: (Bits) Value Ahg476748 jgi|Araly1|476748|fgenesh2_kg.2__1878__AT1G75980.1 1201 0.0 > Ahg476748 jgi|Araly1|476748|fgenesh2_kg.2__1878__AT1G75980.1 Length=908 Score = 1201 bits (650), Expect = 0.0 Identities = 845/934 (90%), Gaps = 34/934 (4%) Strand=Plus/Plus Query 1 GTTTTTTCGCCGTCAAAGGTTAAACAGTCGAAACAATGGAGATTCTGAAGCTTGATGTAG 60 |||||| ||||||| ||||||||||| |||||||||||||||||| |||| ||| |||| Sbjct 1 GTTTTTCCGCCGTCGAAGGTTAAACACTCGAAACAATGGAGATTCAAAAGCCTGAGGTAG 60 Query 61 CGAAGTTTCCAGAAATTGAGGATACAATCGAATTAACTAACCCAAA-GAGAAACGACGAA 119 ||||| |||||||||||| ||||||||||||||||| || |||| |||| |||||||| Sbjct 61 CGAAGAATCCAGAAATTGAAGATACAATCGAATTAACCAA-GCAAAGGAGACACGACGAA 119 Query 120 GTAGAAGATTGCGACGA-C--CAACAGAAGCAGCAGCTAGCTACACAAGAAGATGAAGAG 176 ||||||||||||||||| | ||||| |||||||| | |||| |||||||| ||| Sbjct 120 GTAGAAGATTGCGACGAGCAACAACATAAGCAGCATCAAGCT---GAAGAAGAT---GAG 173 Query 177 GAAGACGAATTGAGAAAGCTTCTGCTTTCAGATATTGGAGAACTTCCGATTTCTCCTCCT 236 |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 174 GAAGACGAATTGCGAAAGCTTCTGCTTTCAGATATTGGAGAGCTTCCGATTTCTCCTCCT 233 Query 237 TCAGCTACACAAGTCAATTTTGTTTCTTACTTCATCACAGATTTTACTAAATCGGGTCAT 296 |||| ||||||||||||||| |||||||||||||| ||||||||||| |||||||||||| Sbjct 234 TCAGGTACACAAGTCAATTTCGTTTCTTACTTCATTACAGATTTTACGAAATCGGGTCAT 293 Query 297 GATCAATATATTTACCGTCACGCTAATGGTTTGTGTGTAATTGGATTGGCTCCTACGCAT 356 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 294 GATCAATATATTTACCGTCACGCAAATGGTTTGTGTGTAATTGGATTGGCTCCTACGCAT 353 Query 357 ATAGCTTTTAAGGATGAAGGTGGAATCACTAGTGTCGATTTCAATGTTGGTAAGTCTGAT 416 ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 354 ATAGCTTTTAAGGATGAAGGTGGAATCACTAACGTCGATTTCAATGTCGGTAAGTCTGAT 413 Query 417 CGTAGCGTCTTGAAAGTCTCCGGCAAGCGTAAAAAGAATGCGTTGCGCTCTGAATCGAAT 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 414 CGTAGCGTCTTGAAAGTCTCCGGCAAGCGTAAAAAGAATGCGTTGCGCTCTGAATCGAAT 473 Query 477 ACAGCATTGTGCAAAGTTTCCACTGCAAAAGATACTTACATTGTTAGGTGCTGCGTTAAA 536 ||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||| Sbjct 474 ACAGCATTGTGCAAAGTTTCCACTGCAAAAGATTCCTACATTGTGAGGTGCTGCGTTAAA 533 Query 537 GGCTCTCTCTTGGAGGTCAACGAGAGATTGATTAAGCAACCAGAGCTTCTTAATTCAACG 596 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || Sbjct 534 GGCTCTCTCTTGGAGGTCAACGAGAGATTAATTAAGCAACCAGAGCTTCTTAATTCATCG 593 Query 597 GCTGACCGCGAAGGGTATATTGCGATAATTATGCCAAGACCTGCAGATTGGACCAAAAAC 656 |||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 594 GCTGACCGGGAAGGGTATATTGCGATAATCATGCCAAGACCTTCAGATTGGACCAAAAAC 653 Query 657 AAGGAGTCACTGATAACTCTGGAGGAATATAAAGAAAAGAAAGAAATGTC-TTTATGATC 715 ||||| ||||||||||||||||||||||||||| ||||||||||||| || ||||||||| Sbjct 654 AAGGAATCACTGATAACTCTGGAGGAATATAAACAAAAGAAAGAAAT-TCCTTTATGATC 712 Query 716 TGAAGCTGATGATGATTAGGGCCGTTAGGCATAAGTCAAATTTGGT-GAAGAACTTTGAA 774 ||| || |||||||||||||||| |||||| ||||||| ||| ||| || | | |||||| Sbjct 713 TGATGCAGATGATGATTAGGGCCATTAGGCTTAAGTCAGATTAGGTTGA-GTATTTTGAA 771 Query 775 GGTCTTTTGCAGTCTAATC-GTTTGAAGCTCTACAATATTTATCAACTGTTGTGTTGTGT 833 | |||||||| |||||||| ||| |||| |||||||||||| | | |||||||||||||| Sbjct 772 GCTCTTTTGCGGTCTAATCTGTT-GAAGGTCTACAATATTT-TGA-CTGTTGTGTTGTGT 828 Query 834 TTTGGCTGACAAAACTA-TTTTGCAAGCAATACAATTTTGCAATGTTCTTCATGAAACCT 892 |||||||||||||| || ||||| | | | | ||||||||||||||||||| Sbjct 829 TTTGGCTGACAAAA-TAATTTTGG--G---T-C--T-----AATGTTCTTCATGAAACCT 874 Query 893 TTTTACATTGCTGTATTAGAAAACACGAGACTAC 926 |||||| || ||||| ||||||||||||| ||| Sbjct 875 TTTTACTTTCCTGTACCAGAAAACACGAGATTAC 908 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40791521190 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5