BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G75990.1
Length=1652
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476749 jgi|Araly1|476749|fgenesh2_kg.2__1879__AT1G75990.1 2196 0.0
Ahg472250 jgi|Araly1|472250|fgenesh2_kg.1__2204__AT1G20200.1 1190 0.0
> Ahg476749 jgi|Araly1|476749|fgenesh2_kg.2__1879__AT1G75990.1
Length=1474
Score = 2196 bits (1189), Expect = 0.0
Identities = 1382/1477 (94%), Gaps = 6/1477 (0%)
Strand=Plus/Plus
Query 53 AAAAAGATGACTCAGGACGTAGAGATGAAAGATAACCAAACCCCAACG-CAATCCGTCGT 111
|||||||||||||| |||||||||||||||||||| |||||||||| | |||||||||||
Sbjct 1 AAAAAGATGACTCAAGACGTAGAGATGAAAGATAATCAAACCCCAA-GTCAATCCGTCGT 59
Query 112 CTCTGCTCCTACCTCCACGCTACAGAATTTGAAGGAGATTGCAGCTCTGATTGATACTGG 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 60 CTCTGCTCCTACCTCCACGCTACAGAATTTGAAGGAGATTGCAGCTCTGATTGATACCGG 119
Query 172 ATCTTATACAAAGGAAGTCCGTCGTATTGCTCGTGCTGTGCGTCTCACCGTTGGACTACG 231
||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 120 ATCTTATACCAAGGAAGTCCGCCGTATTGCTCGTGCTGTGCGTCTCACCGTAGGACTACG 179
Query 232 AAGGAAGCTCACGGGTTCCGTGATCTCTTCTTTCCTTGATTTCGCTTTGGTTCCTGGATC 291
| || ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 180 ACGGCAGCTCACTGGTTCCGTGATCTCTTCGTTCCTTGATTTCGCTTTGGTTCCTGGATC 239
Query 292 TGAAGCTCACACTCGTCTCTCTTCTTTTGTGCCGAAGAGTGATGAACATGACATGGAAGT 351
||||||||| |||||||| |||||||| || || || |||||||||||||||||||||||
Sbjct 240 TGAAGCTCATACTCGTCTTTCTTCTTTCGTTCCCAAAAGTGATGAACATGACATGGAAGT 299
Query 352 TGATACAGCATCATCGAATTCCCAAGCTCCTCCTAAGCATCTACCTGCAGAGCTCGAGAT 411
|||||||||||||| | ||| |||||||||||||||||| |||| || |||||||||||
Sbjct 300 CGATACAGCATCATCTACTTCTCAAGCTCCTCCTAAGCATTTACCCGCTGAGCTCGAGAT 359
Query 412 TTACTGCTACTTCATTGTTCTTCTTTTTCTCATTGATCAGAAAAAGTACAACGAGGCCAA 471
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 360 TTACTGCTACTTCATTGTTCTCCTTTTTCTCATTGATCAGAAAAAGTACAGCGAGGCCAA 419
Query 472 AGTTTGTTCTACCGCTAGCATTGCTCGCCTCAAAAGCGTAAACAGGAGAACCGTTGATGT 531
|| ||||||| | |||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 420 AGCTTGTTCTTCAGCTAGCATTGCTCGCCTCAAAAACGTTAACAGGAGAACCGTTGATGT 479
Query 532 CATTGCTTCCAAATTGTATTTTTACTACTCCTTAAGTTACGAGCTAACTAATGATCTTGC 591
||||||||| |||||||||||||||||||| ||||| |||||||| || |||||||||||
Sbjct 480 CATTGCTTCGAAATTGTATTTTTACTACTCTTTAAGCTACGAGCTGACAAATGATCTTGC 539
Query 592 AGAGATACGTAGTACTCTTCTTGCTCTTCACCATTCGGCCACACTGCGCCACGACGAATT 651
||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| |
Sbjct 540 AGAGATACGTAGTACTCTTCTTGCTCTTCACCATTCGGCGACACTCCGCCATGACGAACT 599
Query 652 GGGCCAGGAAACACTTTTGAATCTGTTGCTTCGCAATTATCTACACTACAACCTGTACGA 711
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 600 GGGCCAGGAAACACTTTTGAATCTGTTGCTTCGCAACTATCTTCACTACAACCTCTACGA 659
Query 712 CCAAGCAGAGAAGTTGAGATCAAAAGCGCCTCGATTTGAGGCACACTCTAACCAACAGTT 771
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 660 CCAAGCAGAGAAGTTGAGATCTAAAGCACCTCGATTTGAGGCACACTCTAACCAACAGTT 719
Query 772 TTGTAGGTACTTGTTTTACCTTGGC-AAGATCAGGACGATTCAACTTGAGTACACCGATG 830
|||||||||| |||||||| |||| |||||| ||||||||||||| |||||||||||||
Sbjct 720 TTGTAGGTACCTGTTTTAC-TTGGGGAAGATCCGGACGATTCAACTAGAGTACACCGATG 778
Query 831 CAAAAGAGAGTCTCCTCCAAGCTGCTAGGAAAGCACCTGTTGCATCTCTGGGATTCAGAA 890
|||||||||| || ||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 779 CAAAAGAGAGCCTTCTCCAAGCTGCTAGGAAAGCACCTGTTGCATCTTTGGGCTTCAGAA 838
Query 891 TCCAGTGCAACAAGTGGGCTATCATAGTTCGGCTGTTGTTGGGTGAAATACCTGAACGAT 950
| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 839 TTCAGTGCAACAAGTGGGCTATTATAGTTCGGCTGTTGTTGGGTGAAATACCAGAACGGT 898
Query 951 CTATCTTCACTCAGAAAGGAATGGAGAAGACTCTTAGGCCATATTTTGAGCTGACCAACG 1010
| |||||||||||||| |||||||||||| |||| | |||||| |||||||| ||||| |
Sbjct 899 CAATCTTCACTCAGAAGGGAATGGAGAAGCCTCTGAAGCCATACTTTGAGCTTACCAATG 958
Query 1011 CTGTGAGAATTGGTGACTTGGAGCTGTTCGGGAAAATCCAAGAGAAGTTTGCCA-AAACA 1069
|||||||||||||||||||||||||||| ||||| |||||||||||||||| | |||||
Sbjct 959 CTGTGAGAATTGGTGACTTGGAGCTGTTTGGGAATGTCCAAGAGAAGTTTGC-AGAAACA 1017
Query 1070 TTTGCGGAAGACAGGACTCACAACCTCATAGTCAGACTCCGACACAACGTGATCAGAACA 1129
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1018 TTTGCGAAAGACAGGACTCACAACCTCATAGTTAGACTCCGACACAACGTGATCAGAACA 1077
Query 1130 GGACTGCGCAACATCAGCATTTCCTACTCCAGAATCTCTCTACAGGATGTTGCTCAAAAG 1189
||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 1078 GGACTGCGCAACATCAGCATTTCCTACTCCAGAATCTCTCTGCAGGACGTTGCACAAAAG 1137
Query 1190 CTGAGACTGAACTCAGCGAACCCAGTGGCTGATGCAGAAAGCATCGTCGCTAAAGCCATT 1249
|| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1138 CTAAGACTGAACTCAGCGAACCCAGTGGCTGATGCAGAAAGCATTGTGGCTAAAGCCATT 1197
Query 1250 AGAGATGGAGCAATCGACGCAACCATCGACCACAAGAACGGTTGTATGGTCTCCAAGGAA 1309
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1198 AGAGATGGAGCAATCGACGCAACCATCGACCACAAGAACGGCTGTATGGTCTCCAAGGAA 1257
Query 1310 ACAGGAGACATCTACTCCACTAATGAACCACAGACTGCGTTTAACTCGAGGATTGCCTTC 1369
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 1258 ACAGGAGACATCTACTCCACTAACGAACCGCAGACTGCGTTTAACTCGAGGATTGCGTTC 1317
Query 1370 TGTTTGAATATGCACAATGAAGCGGTTAGAGCACTGAGGTTCCCGCCAAACACGCACAGG 1429
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
Sbjct 1318 TGTTTGAATATGCACAATGAAGCAGTTAGAGCGTTGAGGTTCCCGCCAAACACGCACAAG 1377
Query 1430 GAGAAAGAGAGCGAGGAGAAAAGAAGGGAGATGAAACAGCAAGAAGAGGAGCTCGCTAAA 1489
|||||||| ||||| |||||||| ||||||| ||||||||||||||||||||| ||||||
Sbjct 1378 GAGAAAGAAAGCGACGAGAAAAGGAGGGAGAAGAAACAGCAAGAAGAGGAGCTAGCTAAA 1437
Query 1490 TACATGGCTGAGGAAGACGATGATGATTTCTAGATTT 1526
||||||||||| |||||||||||||||||||||||||
Sbjct 1438 TACATGGCTGAAGAAGACGATGATGATTTCTAGATTT 1474
> Ahg472250 jgi|Araly1|472250|fgenesh2_kg.1__2204__AT1G20200.1
Length=1777
Score = 1190 bits (644), Expect = 0.0
Identities = 1214/1489 (82%), Gaps = 39/1489 (3%)
Strand=Plus/Plus
Query 56 AAGATGACTCAGGACGTAGAGATGAAAGATAACCAA-ACCCCAACGCAATCCGTCGTCTC 114
|||||||||||||| ||||||||||||||||| ||| || || | ||||| ||| ||||
Sbjct 128 AAGATGACTCAGGATGTAGAGATGAAAGATAA-CAATACTCCTTCTCAATCGGTCATCTC 186
Query 115 TGCTCCTACCTCCACGCTACAGAATTTGAAGGAGATTGCAGCTCTGATTGATACTGGATC 174
| || ||||||||||| | ||| ||||||||||||||||| | ||||| |||||||| ||
Sbjct 187 TTCTTCTACCTCCACGATGCAGCATTTGAAGGAGATTGCAACACTGATCGATACTGGGTC 246
Query 175 TTATACAAAGGAAGTCCGTCGTATTGCTCGTGCTGTGCGTCTCACCGTTGGAC-TACGAA 233
|||||| ||||| || |||||||||||||||||||| ||||| || | || | || |
Sbjct 247 TTATACGAAGGAGGTTCGTCGTATTGCTCGTGCTGTCCGTCTTACTATAGGGCTTA-GGC 305
Query 234 GGAAGCTCACGGGTTCCGTGATCTCTTCTTTCCTTGATTTCGCTTTGGTTCCTGGATCTG 293
| |||||||| || || ||| ||||||| ||||| ||||| ||||||||||| ||||| |
Sbjct 306 GTAAGCTCACCGGCTCTGTGCTCTCTTCGTTCCTGGATTTTGCTTTGGTTCCAGGATCCG 365
Query 294 AAGCTCACACTCGTCTCTCTTCTTTTGTGCCGAAGAGTGATGAACATGACATGGAAGTTG 353
|||||||| |||| || ||||| ||||| || ||| ||||||||||||||||||||||||
Sbjct 366 AAGCTCACTCTCGCCTTTCTTCCTTTGTTCCTAAGGGTGATGAACATGACATGGAAGTTG 425
Query 354 ATACAGCATCATCGAATTCCCAAGCTCCT-C--CTAAGCATCTACCTGCAGAGCTCGAGA 410
||||||| |||||| | | ||||||||| | |||||||||| ||||||||||||||||
Sbjct 426 ATACAGCTTCATCGGCTACGCAAGCTCCTCCTTCTAAGCATCTTCCTGCAGAGCTCGAGA 485
Query 411 TTTACTGCTACTTCATTGTTCTTCTTTTTCTCATTGATCAGAAAAAGTACAACGAGGCCA 470
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 486 TTTACTGCTACTTCATTGTTCTTCTTTTTCTGATTGATCAGAAAAAGTACAACGAGGCTA 545
Query 471 AAGTTTGTTC-TACCGCTAGCATTGCTCGCCTCAA-AAGCGTAAACAGGAGAACCGTTGA 528
||| |||||| | | || ||||||||||| ||||| || ||| ||| | || ||| ||||
Sbjct 546 AAGCTTGTTCGT-CAGCAAGCATTGCTCGTCTCAAGAA-CGTTAACCGAAGGACCATTGA 603
Query 529 TGTCATTGCTTCCAAATTGTATTTTTACTACTCCTTAAGTTACGAGCTAACTAATGATCT 588
||| || || |||| | | || |||||||| ||||| |||||||||| ||| ||||||
Sbjct 604 TGTGATAGCATCCAGACTCTACTTTTACTATTCCTTGAGTTACGAGCAAACCGGTGATCT 663
Query 589 TGCAGAGATACGTAGTACTCTTCTTGCTCTT-CACCATTCGGCCACACTGCGCCACGACG 647
||| || || || ||||||||||||| || || ||||| || || | | || || |
Sbjct 664 TGCTGAAATTCGCGGTACTCTTCTTGCG-TTGCATCATTCTGCAACGTTAAGACATGATG 722
Query 648 AATTGGGCCAGGAAACACTTTTGAATCT-GTTGCTTCGCAATTATCTACACTACAACCTG 706
||||||| |||||||| ||| |||| || ||| || || || ||||| || |||||| |
Sbjct 723 AATTGGGGCAGGAAACTCTTCTGAA-CTTGTTACTACGTAACTATCTTCATTACAACTTA 781
Query 707 TACGACCAAGCAGAGAAGTTGA-GATCAAAAGCGCCTCGATTTGAGGCACACTCTAACCA 765
|| || || || |||||| | | ||||||| || ||||| |||||||| || || |||||
Sbjct 782 TATGATCAGGCGGAGAAGCT-ACGATCAAAGGCACCTCGCTTTGAGGCTCATTCAAACCA 840
Query 766 ACAGTTTTGTAGGTA-CTTGTTTTACCTTGGCAAGAT-CAGGACGATTCAACTTGAGTAC 823
||||||||||||||| || ||| ||||| || ||||| | | |||||||| ||||||||
Sbjct 841 ACAGTTTTGTAGGTATCT-GTTCTACCTCGGGAAGATTC-GTACGATTCAGCTTGAGTAT 898
Query 824 ACCGATGCAAAAGAGAGTCTCCTCCAAGCTGCTAGGAAAGCACCTGTTGCAT-CTCTGGG 882
|| ||||| |||||||| ||||| || ||||| |||||||| ||| |||| | || ||||
Sbjct 899 ACTGATGCGAAAGAGAGCCTCCTTCAGGCTGCCAGGAAAGCCCCTATTGC-TGCTTTGGG 957
Query 883 ATTCAGAATCCAGTGCAACAAGTGGGCTAT-CATAGTTCGGCTGTTGTTGGGTGAAATAC 941
|||||||| || || || || ||||| || | | ||||| ||| | ||||||||||||
Sbjct 958 CTTCAGAATTCAATGTAATAAATGGGCAATTC-TGGTTCGTCTGCTACTGGGTGAAATAC 1016
Query 942 CTGAACGATCTATCTTCACTCAGAAAGG-AATGGAGAA-GACTCTTAGGCCATATTTTGA 999
| ||||| || ||||||||||| ||||| ||||||||| | | || ||||| || |||||
Sbjct 1017 CAGAACGGTCGATCTTCACTCA-AAAGGGAATGGAGAAAGCC-CTCAGGCCTTACTTTGA 1074
Query 1000 GCTGACCAACGCTGTGAGAATTGGTGACTTGGAGCTGTTCGGGAAAATCCAAGAGAAGTT 1059
||| ||||| || || || |||||||||||||||||||| ||| | | || ||||||||
Sbjct 1075 GCTTACCAATGCGGTTAGGATTGGTGACTTGGAGCTGTTTAGGACAGTACAGGAGAAGTT 1134
Query 1060 -T-GCCAAAACATTTGCGGAAGACAGGACTCACAACCTCATAGTCAGACTCCGACACAAC 1117
| | | | ||||| | ||||||| || ||||| ||||| || |||||||| |||||
Sbjct 1135 CTTGG-ACA-CATTTTCTCAAGACAGAACGCACAATCTCATCGTGAGACTCCGCCACAAT 1192
Query 1118 GTGATCAGAACAGGACTGCGCAACATCAGCATTTCCTACTCCAGAATCTCTCTACAGGAT 1177
|| ||||| || ||| |||||||||| ||||| || ||||| ||||||||| ||| |||
Sbjct 1193 GTCATCAGGACTGGATTGCGCAACATAAGCATCTCATACTCGAGAATCTCTTTACCCGAT 1252
Query 1178 GTTGCTCAAAA-GCTGAGACTGAACTCAGCGAACCCAGTGGCTGATGCAGAAAGCATCGT 1236
||||| ||||| |||||| || ||||| | ||||| ||||||||||| |||||||||||
Sbjct 1253 GTTGC-CAAAAAGCTGAGGCTCAACTCCGAAAACCCTGTGGCTGATGCGGAAAGCATCGT 1311
Query 1237 CGCTAAAG-CCATTAGAGATGGAGCAATCGACGCAACCATCGACCACAAGAACGGTTGTA 1295
|| |||| ||||| | |||||||| || || || |||||||| ||||| ||||| || |
Sbjct 1312 GGC-AAAGGCCATTCGTGATGGAGCGATTGATGCGACCATCGATCACAAAAACGGATGGA 1370
Query 1296 TGGTCTCCAAGGAAACAGGAGACATCTACTCCACTAATGAACCACAGACTGCGTTTAACT 1355
|||||||||| |||||||| ||||||||||| || || || ||||| ||||| || ||||
Sbjct 1371 TGGTCTCCAAAGAAACAGGGGACATCTACTCAACGAACGAGCCACAAACTGCATTCAACT 1430
Query 1356 CGAGGATTGCCTTCTGTTTGAATATGCACAATGAAGCGGTTAGAGCACTGAGGTTCCCGC 1415
| || ||||| ||||| | || ||||| || ||||| || |||||| ||||||| || |
Sbjct 1431 CAAGAATTGCTTTCTGCCTCAACATGCATAACGAAGCTGTCAGAGCATTGAGGTTTCCTC 1490
Query 1416 CAAACACGCACAGGGAGAAAGAGAGCGAGGAGAAAAGAAGGGAGATGAAA-CAGCAAGAA 1474
| ||||| |||| ||||||||||||||| ||||| || || |||| |||| || ||||||
Sbjct 1491 CTAACACTCACAAGGAGAAAGAGAGCGATGAGAAGAGGAGAGAGA-GAAAGCAACAAGAA 1549
Query 1475 GAGGAGCTCGCTAAATACATGGCTGAGGAAGACGATGATGATTTCTAGA 1523
|| ||||| ||||| | ||||| |||||||||||||||||||| ||||
Sbjct 1550 GAAGAGCTTGCTAAGCATATGGCCGAGGAAGACGATGATGATTTTTAGA 1598
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61934738370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5