BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76010.1
Length=1636
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476750 jgi|Araly1|476750|fgenesh2_kg.2__1880__AT1G76010.1 2145 0.0
Ahg312946 jgi|Araly1|312946|fgenesh1_pm.C_scaffold_1001726 532 2e-150
> Ahg476750 jgi|Araly1|476750|fgenesh2_kg.2__1880__AT1G76010.1
Length=1595
Score = 2145 bits (1161), Expect = 0.0
Identities = 1508/1659 (91%), Gaps = 90/1659 (5%)
Strand=Plus/Plus
Query 4 GCTTTGCATCAAATTCTTCTTCCCTTAGGGCGTATCAAGGAGAAGAAACAAAGCCGTACA 63
||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1 GCTTTGCATCAAAAGCTTCTT--CTTAGGGCGTATAAAGGAGAAGAAACAAAGCCGTACA 58
Query 64 ACGAGGGCTCTTCCTGGG--C-AAC-AAAACCACCATTTTCGTTTTATCTCAATCTTCGT 119
| |||||||||||||||| | ||| |||||||||||||||||||||||| |||||||||
Sbjct 59 AAGAGGGCTCTTCCTGGGCACAAACAAAAACCACCATTTTCGTTTTATCTGAATCTTCGT 118
Query 120 CTCTTTCGAAAGATCTAACCACAACAACTCCTTAAGATGGATAAGTATCAACGAGTGGTG 179
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 119 CTCTCTCGAAAGATCTAACCACAACTCCTCCTTAAGATGGATAAGTATCAACGAGTGGTG 178
Query 180 AAGCCGAAAGCGGATACGCCGATTGATGCGAATGAGATTCGTATCACTAGTCAAGGCAGG 239
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 179 AAGCCGAAAGCGGATACGCCGATTGATGCGAACGAGATTCGTATCACTAGTCAGGGCAGG 238
Query 240 GCACGAAACTACATCACCTATGCGATGACTCTTCTTCAGGATAAAGGGTCAACTGAAGTT 299
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 239 GCACGAAACTACATCACCTATGCGATGACTCTTCTTCAGGAGAAAGGGTCAACTGAAGTT 298
Query 300 GTATTCAAGGCAATGGGAAGAGCTATCAACAAGACTGTGACCATTGTAGAGCTGATTAAG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GTATTCAAGGCAATGGGAAGAGCTATCAACAAGACTGTGACCATTGTAGAGCTGATTAAG 358
Query 360 AGAAGGATCCCTGATCTTCATCAGAACACATCTATTGGATCCACAGACATCACAGACACA 419
|||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 359 AGAAGGATTCCTGATCTTCATCAGAACACATCTATCGGATCCACAGACATAACAGACACA 418
Query 420 TGGGAACCAACAGAGGAAGGCCTTCTACCTTTGGAGACTACAAGGCATGTGTCAATGATA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TGGGAACCAACAGAGGAAGGCCTTCTACCTTTGGAGACTACAAGGCATGTGTCAATGATA 478
Query 480 ACCATTACCCTATCCAAGATTGAGCTTAATACCTCCTCTGTTGGGTACCAGTGCCCAATT 539
||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 479 ACCATTATCCTATCCAAGGTTGAGCTTAATACATCCTCTGTTGGGTACCAGTGCCCAATT 538
Query 540 CCTATTGAGTTGGTGAAGCCAATGGGCGATATTGATTATGAAGGACGAGAGGGTTCACCT 599
||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 539 CCTATTGAGATGGTGAAGCCAATGGGCGATATCAATTATGAAGGGCGAGAGGGTTCACCT 598
Query 600 GGTGGCagagggaggggaagaggaagaggaaggggaagaggaagggggcgaggtggcaga 659
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 599 GGTGGCAGAGGGAGGGGAAGAGGAAGAGGAAGGGGAAGAGGAAGGGGGCGAGGCGGCAGA 658
Query 660 ggaaATGCTTATGTGAACGTTGAGCATGAAGATGGAGGTTGGGAACGTGAGCAGTCCTAT 719
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 659 GGAAATGCTTATGTGAACGTTGAGCATGAAGATGGAGGTTGGGAACGTGACCAGTCCTAT 718
Query 720 GGTAGAGGAAGAGGACGTGGCAGAGGACGCAGCAGTCGTGGTCGTGGAAGAGGAGGATAC 779
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 719 GGTAGAGGAAGAGGACGTGGCAGAGGACGCAGCAGTCGTGGTCGGGGAAGAGGAGGATAC 778
Query 780 AATGGTCCTCCGAATGAGTATGATGCACCACAAGATGGAGGTTACGGTTACGATGCTCCT 839
||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 779 AATGGTCCTCCAAACGAGTATGATGCACCGCAAGATGGAGGTTACGGTTACGATGCTCCT 838
Query 840 C---ATGAACACCGTGGATATGATGACCGTGGTGGTTATGATGCCCCTCCTCAGGGCCGT 896
| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 839 CCTCATGAACACCGTGGATATGATGACCGTGGTGGTTACGATGCCCCTCCTCAGGGCCGC 898
Query 897 GGTGGTTACGATGGTCC---TCAGGGTCGCGGTGGTTACGATGGTCCTC---AGGGTCGC 950
|||||||| |||||||| |||||| ||||| ||||| |||||||||| |||| |||
Sbjct 899 GGTGGTTATGATGGTCCCACTCAGGGCCGCGGCGGTTATGATGGTCCTCCTCAGGGCCGC 958
Query 951 CGTGGTTATGATGGTCCTCCTCAGGGCCGTGGTGGTTATGATGGTCCTTCTCAAGGCCGT 1010
| |||||||||||||||||||||||||| || ||||||||||||||| |||| |||||
Sbjct 959 GGCGGTTATGATGGTCCTCCTCAGGGCCGCGGCGGTTATGATGGTCCTCCTCAGGGCCGC 1018
Query 1011 GGTGGTTATGATGGTCCTTCTCAGGGCCGTGGTGGTTATGATGGTCCTTCTCAGGGCCGT 1070
|| |||||||||||||||||||||||||| || ||||||||||||||| |||| ||||||
Sbjct 1019 GGCGGTTATGATGGTCCTTCTCAGGGCCGCGGCGGTTATGATGGTCCTCCTCAAGGCCGT 1078
Query 1071 GGTGGTTATGATGGTCCTCAGGGTcgtgggcgtggacgtggacgtggaaggggaggacgt 1130
|| | | ||| | || || | ||| || | ||||||||| |||
Sbjct 1079 GG-GC----G-TGG-----A----CG----CG-G-ACG----CG-G-AAGGGGAGGTCGT 1111
Query 1131 ggaagaggaggaggacgtggtggtgatggtggtTTCAACAACAGATCAGATGGACCACCA 1190
|||||||||||||| |||||||||| ||| || |||||||||||||||||||||||||||
Sbjct 1112 GGAAGAGGAGGAGGTCGTGGTGGTGGTGGAGGATTCAACAACAGATCAGATGGACCACCA 1171
Query 1191 GTCCAGGCAGCTGCTTGAGAGTGAGGTTTCTCTTACACAAACATAAAAAGAAGAAAAAAG 1250
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
Sbjct 1172 ATCCAGGCAGCTGCTTGAGAGTGAGGTTTCTTTTACACAAACATAAAAAGAA-AAAA--G 1228
Query 1251 CCCAAGTCGTTGGATGtttttttt--CTATCTCCTTGTTCTCTCACTTTCTTTCTATGTT 1308
|||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||
Sbjct 1229 CCCAAGTCGTTGGATGTTTTTTTTTTCTATCTCCTTGTTCACTCTCTTTCTTTCTATGTT 1288
Query 1309 TGCTTCTTCTGTCCATCAAGAAGACATGTTTGCCATAAGTGTATCTCATTCCCCTTCttt 1368
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| || ||
Sbjct 1289 TGCTTCTTCTGTCCATCAAGAAGACATGTTTGTCATAAGTGTATCTCTTTCCC-TT-TTC 1346
Query 1369 tttttttACTATCCATTGATTGACAGTGTTTTAGCTTGTGGTCTGTTTTGTTTAGAGTCG 1428
||| | | ||||||||| ||||| || | |||| ||||||||||||||||||
Sbjct 1347 TTT----A-T--CCATTGATTCACAGT-TT---G-TTGT---CTGTTTTGTTTAGAGTCG 1391
Query 1429 CTTAGG--A-A-TATATGTTCAATTTATTTTATGGTTGGTCGTCGTCTTGGGTTTTTGTT 1484
|||||| | | |||||||||||||||||| |||||||| || | || | |||
Sbjct 1392 CTTAGGGTATAATATATGTTCAATTTATTT-ATGGTTGG--GT--T-TT---T----GTT 1438
Query 1485 AGAGAAGAACTACTGAGGCATCCtcttttcttttcttttttcct--ctgttttgtagttt 1542
||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||
Sbjct 1439 AGAGAAGAACTACTGAGGCATCCTCTTTTCTTT-CTTTTT-CCTTTCTGTTTTGTAGTTT 1496
Query 1543 tgtttAG-G-TGAGAGTGAGACACAGTTTGGACAAATTACCTCTTTTCTT-T--GGTTAT 1597
||||||| | ||||||||||||||||||||||||||||| |||||||||| | ||||||
Sbjct 1497 TGTTTAGAGGTGAGAGTGAGACACAGTTTGGACAAATTAACTCTTTTCTTCTTTGGTTAT 1556
Query 1598 CAGTTTTAATGTGATGGAACAGTTGATTCTTTTATTTCC 1636
|||||||||||||||||||||||||||||||||||||||
Sbjct 1557 CAGTTTTAATGTGATGGAACAGTTGATTCTTTTATTTCC 1595
> Ahg312946 jgi|Araly1|312946|fgenesh1_pm.C_scaffold_1001726
Length=1590
Score = 532 bits (288), Expect = 2e-150
Identities = 469/554 (85%), Gaps = 22/554 (4%)
Strand=Plus/Plus
Query 155 GATGGATAAGTATCA-ACGAGTGGTGAAGCCGAAAGCGGATACGCCGATTGATGCGAATG 213
||||||||||||||| | |||||| ||||||||| |||||||||||||||| || |||||
Sbjct 636 GATGGATAAGTATCAGA-GAGTGGAGAAGCCGAAGGCGGATACGCCGATTGCTGAGAATG 694
Query 214 AGATTCGTATCACTAGTCA-AGGCAGGGCACGAAACTACATCACCTATGCGATGACTCTT 272
||||||||||||| ||| | || |||||||||||||||||||||||||||||| |||||
Sbjct 695 AGATTCGTATCACCAGT-ATGGGTAGGGCACGAAACTACATCACCTATGCGATGGCTCTT 753
Query 273 CTTCAGGATAA-AGGGTC-AACTGAAGTTGTATTCAAGGCAATGGGAAGAGCTATCAACA 330
|||||||| || | || || ||||||| | |||||||| |||||||||||||||||||
Sbjct 754 CTTCAGGAAAACAAA-TCGAA-TGAAGTTATTTTCAAGGCTATGGGAAGAGCTATCAACA 811
Query 331 AGACTGTGACCATTGTAGAGCTGATTAAGAGAAGGATCCCTGATCTTCATCAGAACACAT 390
||| ||||| ||| || |||||||||||||||||||| |||| ||||||||||| | |||
Sbjct 812 AGAGTGTGAACATAGTTGAGCTGATTAAGAGAAGGATTCCTGGTCTTCATCAGATCTCAT 871
Query 391 CTATTGGATCCACAGACATCACAGACACATGGGAACCAACAGAGGAAGGCCTTCTACCT- 449
||||||||||||| | ||| ||||| || |||||||| ||||||||||||||||| ||
Sbjct 872 CTATTGGATCCACGGCCATAACAGATACCTGGGAACCTACAGAGGAAGGCCTTCTTCCAA 931
Query 450 TTGGAGACTACAAGGCATGTGTCAATGATAACCATTACCCTATCCAAG-ATTGAGCTT-A 507
||| |||| |||||||||||||| ||||||||||| || || || ||| | ||| || |
Sbjct 932 TTG-AGACCACAAGGCATGTGTCGATGATAACCATAACACTTTCGAAGGAG-GAG-TTGA 988
Query 508 ATACCTCCTCTGTTGGGTACCAGTGCCCAATTCCTATTGAGTTGGTGAAGCCAATGGGC- 566
| || ||||| |||||||||||||| || |||||||||||| ||||||||||| | | |
Sbjct 989 ACACATCCTCGGTTGGGTACCAGTGTCCTATTCCTATTGAGATGGTGAAGCCATTCG-CT 1047
Query 567 GATATTGATTATGAAGGACGAGAGGGTTCACCTGGTGGCagagggaggggaagagg-a-a 624
|| ||||||| ||||||| |||||| || ||| | |||||||| ||| |||||| | |
Sbjct 1048 GAGGTTGATTACGAAGGACAAGAGGGATCTCCTAGAGGCAGAGG-AGG--AAGAGGCAGA 1104
Query 625 g-aggaaggggaagaggaagggggcgaggtggcagaggaaATGCTTATGTGAACGTTGAG 683
| |||||| |||||||||||||| |||| ||||||||||||| |||||||| | ||||
Sbjct 1105 GGAGGAAGAGGAAGAGGAAGGGGAAGAGGCGGCAGAGGAAATGGATATGTGAATGCTGAG 1164
Query 684 CATGAAGATGGAGG 697
|||| ||||||||
Sbjct 1165 TATGATGATGGAGG 1178
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61325294450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5