BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76020.1
Length=849
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926990 jgi|Araly1|926990|scaffold_202551.1 1062 0.0
> Ahg926990 jgi|Araly1|926990|scaffold_202551.1
Length=730
Score = 1062 bits (575), Expect = 0.0
Identities = 679/729 (93%), Gaps = 7/729 (1%)
Strand=Plus/Plus
Query 6 AAAGTGTGAGTC-AGAGAATAATGATTCGAGCGGTTCTCCTGTTCCTTGTCTTCGTCGT- 63
|||||||||| | ||||||||||||||||| || || | ||||| ||||| |||||||
Sbjct 1 AAAGTGTGAG-CTAGAGAATAATGATTCGAACGATTTTGGTGTTCATTGTCGTCGTCGTC 59
Query 64 --TGAGACGAGAGTACAAGCGCAGCTAGTGCCGCCGGTGAGGCAAGATGGTTTCGTTTAC 121
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 60 ACTGAGACGCGAGTACAAGCGCAGCTAGTGCCGCCCGTGAGGCAAGATGGTTTCGTTTAC 119
Query 122 CCACCGGGTCATCGTTTCGACCCGGATACTATACTAATTGAGGCGTATTTTGACCCGGTT 181
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CCACCGGGTCATCGTTTTGACCCGGATACTATACTAATTGAGGCGTATTTTGACCCGGTT 179
Query 182 TGCCCGGACAGTAGAGACTCTTGGCCGCCACTGAAGCAAGCTCTTCATCACTATGGATCT 241
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 180 TGCCCGGACAGTAGAGACTCTTGGCCGCCTCTGAAGCAAGCTCTTCATCACTATGGATCT 239
Query 242 CGCGTTGCCCTTCTCCTCCATCTCCTTCCTTTACCCTACCATGACAATGCCTATGTAACA 301
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 CGCGTTGCCCTTCTCCTCCATCTCCTTCCTTTACCCTACCATGACAATGCATATGTAACC 299
Query 302 TCACGGGCCTTACACATTGTGAATACCGTACACGCCAATGCTACCTTCAGTTTGCTGGAA 361
|| ||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||
Sbjct 300 TCTCGGGCCTTACACATTGTGAATACCGTAAACGCCAATGCTACTTTCAGTTTACTGGAA 359
Query 362 GGGTTCTTCAAGCATCAGTCATTGTTTTACAACGCGCAAACACAACT-CCTTTCAAGACC 420
|||||||||||||||||| ||||||| ||||| ||||||||| | | ||| ||||| |
Sbjct 360 GGGTTCTTCAAGCATCAGCCATTGTTCTACAATGCGCAAACA-ATCCACCTGACAAGAGC 418
Query 421 TGCAGTTGTGGAGAAAATAGTCGAACTTGGAACAGTCTCGTTGGGGAACTCATATCAATC 480
||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||
Sbjct 419 TGCAGTTGTGGAGAAAATAGTCGAACTTGGAACAGTCACGTTGGGAAAGTCATATCAATC 478
Query 481 GGTTCTTAAATCCGGCTTCAGCGACAAAAAATCGGATCGTGCAACCAGAGTTTCCTTCAA 540
||| || ||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 479 GGTCCTCAAATCCGGCTTCAGCGACAAAAAATCGGATCGTGCTACCAGGGTTTCCTTCAA 538
Query 541 GTATAGCGCTTCAAGAGGGGTTTATGGTACACCAACCTTCTACGTTAACGGGTTTGTATT 600
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 539 GTATAGCGGTTCAAGAGGGGTTTATGGGACACCAACCTTCTACGTTAACGGGTTTGTATT 598
Query 601 GTCTGATGCTGCTTCCCCTTCAAATTTTGGAGGATGGAAGAAAATCATTGATCCTCTGGT 660
|||||||||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 599 GTCTGATGCTGCTTCCCCCTCAAACTTTGGAGGATGGAAAAAAATCATTGACCCTCTGGT 658
Query 661 TCAAGCACATGAGATGGAAGATAACTTCATTCCCTTCCTTTGAAGATTTTAAGTGCTTTT 720
|||||||||| || ||||||||||||||||||||| |||| |||||| ||||||||||||
Sbjct 659 TCAAGCACATAAGGTGGAAGATAACTTCATTCCCTACCTTCGAAGATCTTAAGTGCTTTT 718
Query 721 GCTGTGTCA 729
|||||||||
Sbjct 719 GCTGTGTCA 727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31413283608
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5