BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76030.1
Length=1900
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476752 jgi|Araly1|476752|fgenesh2_kg.2__1882__AT1G76030.1 2940 0.0
Ahg472256 jgi|Araly1|472256|fgenesh2_kg.1__2210__AT1G20260.2 1912 0.0
Ahg490612 jgi|Araly1|490612|fgenesh2_kg.7__45__AT4G38510.2 1112 0.0
> Ahg476752 jgi|Araly1|476752|fgenesh2_kg.2__1882__AT1G76030.1
Length=1849
Score = 2940 bits (1592), Expect = 0.0
Identities = 1785/1874 (95%), Gaps = 30/1874 (2%)
Strand=Plus/Plus
Query 16 AGATTTGAGATATGGTCCAACTACGTTCACAGAGAGACTCATAAACCATAActctctctc 75
|||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 AGATTTGAGATATGGTCCAACTACGTTCACAGAGAGACTCGTAAACCATAA--------- 51
Query 76 cctctctccctctctccctctctctctGCTCGAATCGAACCGTTCCCAGGAGCTG-CT-T 133
|||| |||||| ||||||||| ||||||||||| | || |||||| | | | |
Sbjct 52 ---CTCT--CTCTCT--CTCTCTCTC--CTCGAATCGAAAC-TTTCCAGGAAC-GTATCT 100
Query 134 TGATTTGGTTTATCGTTGATCTGTGAAAATGGGGACGAATGATCTCGACATCGAAGAAGG 193
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 101 TGATTTGGTTTATCTTTGATCTGTGAAAATGGGGGCGAATGATCTCGACATCGAAGAAGG 160
Query 194 GACTCTGGAGATCGGCATGGAGTATAGAACTGTTTCTGGTGTTGCTGGACCATTGGTCAT 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 161 GACTCTGGAGATCGGCATGGAGTATAGAACTGTTTCTGGTGTTGCTGGACCATTGGTCAT 220
Query 254 TCTTGACAAAGTGAAGGGTCCAAAGTACCAGGAGATTGTTAATATTCGCTTAGGAGATGG 313
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 221 TCTTGATAAAGTGAAGGGTCCAAAGTACCAGGAGATTGTTAATATTCGTTTAGGAGATGG 280
Query 314 ATCAACGAGACGTGGTCAGGTTTTGGAAGTTGATGGCGAGAAAGCAGTTGTGCAGGTTTT 373
||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 281 ATCAACGAGACGTGGCCAGGTTTTGGAAGTTGACGGAGAGAAAGCAGTTGTGCAGGTTTT 340
Query 374 TGAAGGAACATCTGGAATTGACAACAAGTTTACAACCGTGCAATTCACAGGAGAGGTTTT 433
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 341 TGAAGGAACATCTGGAATTGACAACAAGTTTACCACCGTGCAATTCACAGGAGAGGTTTT 400
Query 434 GAAAACACCTGTATCATTGGACATGCTTGGGCGCATATTTAACGGTTCAGGAAAGCCGAT 493
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 GAAAACTCCTGTGTCATTGGACATGCTTGGGCGCATATTTAACGGTTCAGGAAAGCCGAT 460
Query 494 TGATAATGGCCCTCCTATTCTGCCAGAAGCATACCTTGATATTTCAGGAAGTTCAATCAA 553
||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||
Sbjct 461 TGATAATGGCCCTCCTATTTTGCCAGAGGCATACCTTGATATCTCAGGAAGTTCAATCAA 520
Query 554 CCCCAGTGAAAGAACCTATCCTGAAGAGATGATACAGACAGGCATATCGACCATCGATGT 613
||||||||||||||||||||| |||||||||||||||||||| || || |||||||||||
Sbjct 521 CCCCAGTGAAAGAACCTATCCCGAAGAGATGATACAGACAGGAATTTCCACCATCGATGT 580
Query 614 CATGAATTCCATTGCTCGTGGACAGAAGATTCCACTTTTCTCTGCTGCTGGTCTTCCACA 673
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 581 CATGAATTCCATTGCTCGTGGACAGAAGATTCCGCTTTTCTCTGCTGCTGGTCTTCCACA 640
Query 674 TAATGAAATAGCTGCTCAGATTTGTCGTCAGGCTGGTCTAGTCAAGCGTTTGGAAAAGAC 733
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 641 TAATGAAATAGCTGCTCAGATTTGTCGTCAGGCTGGTCTTGTCAAACGTTTGGAAAAGAC 700
Query 734 TGTTGATCTACTTGAGGATCATGGAGAGGACAATTTTGCAATTGTGTTTGCAGCTATGGG 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 TGTTGATCTACTTGAGGATCATGGAGAGGACAATTTTGCAATTGTGTTTGCAGCTATGGG 760
Query 794 TGTGAACATGGAGACAGCTCAGTTCTTCAAGCGAGATTTTGAAGAAAATGGATCAATGGA 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 TGTGAACATGGAGACAGCTCAGTTCTTCAAGCGAGATTTTGAAGAAAATGGATCAATGGA 820
Query 854 GAGAGTTACTCTTTTCCTGAACCTGGCCAATGACCCAACCATTGAGAGAATCATCACTCC 913
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 821 GAGAGTTACTCTTTTCCTGAACCTGGCCAATGACCCAACGATTGAGAGAATCATCACTCC 880
Query 914 TCGAATTGCCCTCACAACAGCTGAATATCTGGCTTATGAATGTGGGAAACACGTCCTTGT 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 TCGAATTGCCCTCACAACAGCTGAATATCTGGCTTATGAATGTGGGAAACACGTCCTTGT 940
Query 974 TATATTGACGGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTTTCCGCTGCCCGAGA 1033
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 TATATTGACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTTTCCGCTGCCCGAGA 1000
Query 1034 AGAGGTTCCCGGAAGACGTGGATATCCAGGTTATATGTACACTGATCTTGCAACTATTTA 1093
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 AGAGGTTCCCGGAAGACGTGGATATCCAGGTTATATGTACACTGATCTTGCAACTATTTA 1060
Query 1094 TGAACGTGCTGGGCGTATAGAAGGAAGAAAAGGTTCCATCACCCAAATTCCAATCCTCAC 1153
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1061 TGAACGTGCTGGGCGTATTGAAGGAAGAAAAGGTTCCATCACCCAAATCCCAATCCTCAC 1120
Query 1154 TATGCCCAATGACGATATCACTCATCCAACTCCGGATCTTACTGGTTACATTACTGAAGG 1213
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 TATGCCCAATGACGACATCACTCATCCAACTCCGGATCTTACTGGTTACATTACTGAAGG 1180
Query 1214 TCAGATATATATCGATAGGCAACTTCACAACAGACAGATATATCCACCCATCAACGTGCT 1273
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1181 TCAGATATATATCGATAGGCAACTGCACAACAGACAGATATATCCACCCATCAACGTGCT 1240
Query 1274 TCCATCCCTTTCTCGTTTAATGAAGAGTGCTATCGGCGAGGGCATGACTCGTAAAGACCA 1333
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1241 TCCATCCCTTTCTCGTTTAATGAAGAGTGCTATTGGCGAGGGCATGACTCGTAAAGATCA 1300
Query 1334 TTCTGATGTGTCGAACCAGCTGTATGCAAATTATGCAATCGGGAAAGATGTTCAAGCGAT 1393
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1301 TTCAGATGTGTCGAACCAGCTGTATGCGAATTATGCAATCGGGAAAGATGTTCAAGCGAT 1360
Query 1394 GAAAGCTGTTGTTGGAGAAGAAGCACTTTCTTCAGAGGATTTGCTTTATCTAGAGTTTTT 1453
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1361 GAAAGCTGTTGTTGGAGAAGAAGCACTTTCTTCAGAGGATCTGCTTTATCTAGAGTTTTT 1420
Query 1454 GGATAAGTTTGAGAGGAAGTTTGTGATGCAAGGAGCTTATGATACACGCAACATCTTCCA 1513
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || ||
Sbjct 1421 GGATAAGTTTGAGAGGAAGTTTGTAATGCAAGGAGCTTATGACACACGCAACATTTTTCA 1480
Query 1514 GTCGCTGGACTTAGCTTGGACATTGCTCCGTATCTTCCCACGGGAGCTTCTTCATCGTAT 1573
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1481 GTCGCTGGATTTAGCTTGGACATTGCTCCGTATCTTCCCACGGGAGCTTCTTCACCGTAT 1540
Query 1574 CCCTGCAAAGACACTTGACCAATTCTACAGCCGCGACTCAACCAGTTAAAATGAGGTAAT 1633
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1541 CCCTGCAAAGACACTTGACCAATTCTACAGCCGCGACTCAACCACTTAAAATGAGGTAAT 1600
Query 1634 GGAGGTTATCTTATCGAAACTCTTTTGAGAG-AAAAGTGTGAATTTTTGTGATGTGTATT 1692
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||
Sbjct 1601 GGAGGTTATCTTATCGAAACTCTTTTGAGAGGAAAAGTGTGAATTTT-GTGATGTCTATT 1659
Query 1693 ATTTGGTGCTTATTATAAAGAGGAAAAACAAAGAAAAGCTATATATTCTGTGTCTCCCTA 1752
||||||||| |||| || ||||||||| ||||||| |||||||||||| || ||||| ||
Sbjct 1660 ATTTGGTGCGTATTTTATAGAGGAAAA-CAAAGAAGAGCTATATATTCCGTCTCTCCATA 1718
Query 1753 TCTGGTGATAttttttttGGTTCTGCATTGTGTTCCAAAGTGGAAATAAAAATCGATAAA 1812
||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||
Sbjct 1719 TCTGGTGATATTTTTTTTGGTTCTG--TTGTGTTCCACAGTGAAAATAAAAATCGATAAA 1776
Query 1813 -CGATGTCGTATTGTAGTACTTTCC-TTTTCTTTGTATGAATTTGTTAAGATTGGTTTAT 1870
||||||||||||||| ||| |||| |||| |||||| ||||||||| || |||||| ||
Sbjct 1777 ACGATGTCGTATTGTATTACCTTCCCTTTT-TTTGTACGAATTTGTTGAGTTTGGTTCAT 1835
Query 1871 AAATGGGATTATAA 1884
||||||||||||||
Sbjct 1836 AAATGGGATTATAA 1849
> Ahg472256 jgi|Araly1|472256|fgenesh2_kg.1__2210__AT1G20260.2
Length=1872
Score = 1912 bits (1035), Expect = 0.0
Identities = 1332/1478 (90%), Gaps = 9/1478 (1%)
Strand=Plus/Plus
Query 151 GATCTGTGAAAATGG-GGACGAATGATCTCGACATCGAAGAAGGGACTCTGGAGATCGGC 209
||||||||| ||||| ||| || || | ||||||| || ||||| ||||| ||||||||
Sbjct 88 GATCTGTGACAATGGTGGA-GACTGGTATCGACATGGAGGAAGGAACTCTCGAGATCGGA 146
Query 210 ATGGAGTATAGAACTGTTTCTGGTGTTGCTGGACCATTGGTCATTCTTGACAAAGTGAAG 269
||||| ||||||||||| || || ||||| ||||| |||||||| |||||||||||||||
Sbjct 147 ATGGAATATAGAACTGTCTCCGGGGTTGCGGGACCCTTGGTCATCCTTGACAAAGTGAAG 206
Query 270 GGTCCAAAGTACCAGGAGATTGTTAATATTCGCTTAGGAGATGGATCAACGAGACGTGGT 329
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 207 GGTCCAAAGTACCAGGAGATTGTTAATATTCGCTTAGGAGATGGATCAACCAGACGTGGT 266
Query 330 CAGGTTTTGGAAGTTGATGGCGAGAAAGCAGTTGTGCAGGTTTTTGAAGGAACATCTGGA 389
||||| ||||| |||||||| |||||||| ||||| ||||||||||||||||||||||||
Sbjct 267 CAGGTCTTGGAGGTTGATGGGGAGAAAGCTGTTGTCCAGGTTTTTGAAGGAACATCTGGA 326
Query 390 ATTGACAACAAGTTTACAACCGTGCAATTCACAGGAGAGGTTTTGAAAACACCTGTATCA 449
||||||||||||||||| ||||||||||||||||||||||| |||| || ||||| |||
Sbjct 327 ATTGACAACAAGTTTACCACCGTGCAATTCACAGGAGAGGTACTGAAGACGCCTGTTTCA 386
Query 450 TTGGACATGCTTGGGCGCATATTTAACGGTTCAGGAAAGCCGATTGATAATGGCCCTCCT 509
|||||||||||||| || ||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 387 TTGGACATGCTTGGCCGTATATTTAACGGCTCAGGAAAGCCAATTGACAATGGCCCTCCT 446
Query 510 ATTCTGCCAGAAGCATACCTTGATATTTCAGGAAGTTCAATCAACCCCAGTGAAAGAACC 569
||| ||||||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 447 ATTTTGCCAGAGGCATACCTTGATATTTCGGGTAGTTCAATCAACCCCAGTGAAAGAACC 506
Query 570 TATCCTGAAGAGATGATACAGACAGGCATATCGACCATCGATGTCATGAATTCCATTGCT 629
|| ||||||||||||||||| || || || || ||||| ||||||||||| |||||||||
Sbjct 507 TACCCTGAAGAGATGATACAAACGGGGATTTCTACCATTGATGTCATGAACTCCATTGCT 566
Query 630 CGTGGACAGAAGATTCCACTTTTCTCTGCTGCTGGTCTTCCACATAATGAAATAGCTGCT 689
||||||||||||||||| |||||||||||||||||||| || ||||| || || ||||||
Sbjct 567 CGTGGACAGAAGATTCCTCTTTTCTCTGCTGCTGGTCTACCTCATAACGAGATTGCTGCT 626
Query 690 CAGATTTGTCGTCAGGCTGGTCTAGTCAAGCGTTTGGAAAAGACTGTTGATCT-ACTT-- 746
|| ||||||||||||||||| || || ||||| ||||| ||||||| || || | ||
Sbjct 627 CAAATTTGTCGTCAGGCTGGACTTGTGAAGCGGTTGGAGAAGACTGA-GAACTTAATTCA 685
Query 747 G-AGGATCATGGAGAGGACAATTTTGCAATTGTGTTTGCAGCTATGGGTGTGAACATGGA 805
| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 686 GGAGGATCATGGAGAGGACAATTTTGCAATTGTTTTTGCAGCTATGGGTGTAAACATGGA 745
Query 806 GACAGCTCAGTTCTTCAAGCGAGATTTTGAAGAAAATGGATCAATGGAGAGAGTTACTCT 865
||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| ||
Sbjct 746 GACAGCTCAGTTCTTCAAGCGCGATTTTGAAGAAAATGGATCGATGGAAAGAGTTACCCT 805
Query 866 TTTCCTGAACCTGGCCAATGACCCAACCATTGAGAGAATCATCACTCCTCGAATTGCCCT 925
|||| |||||||||| |||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 806 TTTCTTGAACCTGGCTAATGACCCAACCATCGAGAGAATTATCACTCCTCGAATTGCCCT 865
Query 926 CACAACAGCTGAATATCTGGCTTATGAATGTGGGAAACACGTCCTTGTTATATTGACGGA 985
||||| ||||||||| ||||||||||||||||||| || || |||||||||||||| ||
Sbjct 866 TACAACCGCTGAATATTTGGCTTATGAATGTGGGAAGCATGTGCTTGTTATATTGACAGA 925
Query 986 TATGAGTTCTTATGCTGATGCTCTTCGTGAGGTTTCCGCTGCCCGAGAAGAGGTTCCCGG 1045
|||||||||||||| |||||||||||||||||||| ||||| |||||||| ||||| ||
Sbjct 926 CATGAGTTCTTATGCAGATGCTCTTCGTGAGGTTTCTGCTGCTCGAGAAGAAGTTCCTGG 985
Query 1046 AAGACGTGGATATCCAGGTTATATGTACACTGATCTTGCAACTATTTATGAACGTGCTGG 1105
|||||||||||||||||| |||||||| || ||||||||||||||||| |||||||| ||
Sbjct 986 AAGACGTGGATATCCAGGGTATATGTATACAGATCTTGCAACTATTTACGAACGTGCAGG 1045
Query 1106 GCGTATAGAAGGAAGAAAAGGTTCCATCACCCAAATTCCAATCCTCACTATGCCCAATGA 1165
||||| ||||||||||| |||||||| |||||||| || ||||| ||||||||||||||
Sbjct 1046 ACGTATTGAAGGAAGAAAGGGTTCCATTACCCAAATCCCTATCCTGACTATGCCCAATGA 1105
Query 1166 CGATATCACTCATCCAACTCCGGATCTTACTGGTTACATTACTGAAGGTCAGATATATAT 1225
|||||||| || || ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1106 TGATATCACCCACCCTACTCCGGATCTTACTGGTTACATCACTGAGGGTCAGATATATAT 1165
Query 1226 CGATAGGCAACTTCACAACAGACAGATATATCCACCCATCAACGTGCTTCCATCCCTTTC 1285
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1166 TGATAGGCAACTTCACAACAGACAGATATATCCACCCATCAACGTGCTTCCATCACTTTC 1225
Query 1286 TCGTTTAATGAAGAGTGCTATCGGCGAGGGCATGACTCGTAAAGACCATTCTGATGTGTC 1345
||| ||||||||||||||||| || || || |||||||| ||||||||||||||||||||
Sbjct 1226 TCGATTAATGAAGAGTGCTATTGGTGAAGGAATGACTCGCAAAGACCATTCTGATGTGTC 1285
Query 1346 GAACCAGCTGTATGCAAATTATGCAATCGGGAAAGATGTTCAAGCGATGAAAGCTGTTGT 1405
|||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1286 CAACCAGCTATACGCAAATTATGCAATCGGGAAAGATGTTCAAGCCATGAAAGCTGTTGT 1345
Query 1406 TGGAGAAGAAGCACTTTCTTCAGAGGATTTGCTTTATCTAGAGTTTTTGGATAAGTTTGA 1465
|||||||||||| |||||||| |||||| |||| ||| | |||||| | ||||| |||||
Sbjct 1346 TGGAGAAGAAGCTCTTTCTTCTGAGGATCTGCTGTATTTGGAGTTTCTAGATAAATTTGA 1405
Query 1466 GAGGAAGTTTGTGATGCAAGGAGCTTATGATACACGCAACATCTTCCAGTCGCTGGACTT 1525
||||||||||||||||||||| || ||||||||| | ||||||||||||||||| |||||
Sbjct 1406 GAGGAAGTTTGTGATGCAAGGCGCATATGATACAAGAAACATCTTCCAGTCGCTTGACTT 1465
Query 1526 AGCTTGGACATTGCTCCGTATCTTCCCACGGGAGCTTCTTCATCGTATCCCTGC-AAAGA 1584
|| |||||||||||||||||||||||||| ||||||||||| ||||| ||||| ||| |
Sbjct 1466 GGCATGGACATTGCTCCGTATCTTCCCACGTGAGCTTCTTCACCGTATTCCTGCCAAA-A 1524
Query 1585 CACTTGACCAATTCTACAGCCGCGACTCAACCAGTTAA 1622
||||||| |||||||||||||| ||||| || || |||
Sbjct 1525 CACTTGATCAATTCTACAGCCGTGACTCCACAAGCTAA 1562
> Ahg490612 jgi|Araly1|490612|fgenesh2_kg.7__45__AT4G38510.2
Length=1835
Score = 1112 bits (602), Expect = 0.0
Identities = 1181/1458 (81%), Gaps = 49/1458 (3%)
Strand=Plus/Plus
Query 191 AGGG-ACTCTGGAGATCGGCATGGAGTATAGAACTGTTTCTGGTGTTGCTGGACCAT-TG 248
|||| || ||||||||||||||||||||||||||||| ||||||||||| || || | |
Sbjct 76 AGGGTACCCTGGAGATCGGCATGGAGTATAGAACTGTCTCTGGTGTTGCCGGCCC-TCTC 134
Query 249 GTCATTCTTGACAAAGTGAAGGGTCC-AAAGTACCAGGAGATTGTTAATATTCG-CTTAG 306
||||| ||||| ||||| ||||| || ||| ||||| || ||||| ||||| || ||| |
Sbjct 135 GTCATCCTTGAAAAAGTCAAGGGCCCTAAA-TACCAAGAAATTGTCAATATCCGTCTTGG 193
Query 307 GAGATGGATCAACGAGACGTGGTCAGGTTTTGGAAGTTGATGGCGAGAAAGCAGTTGTGC 366
| |||||| | || |||||||||| ||| | ||||||||||| |||||||| ||||| |
Sbjct 194 G-GATGGAACTACCCGACGTGGTCAAGTTCTCGAAGTTGATGGAGAGAAAGCTGTTGTTC 252
Query 367 AGGTTTTTGAAGGAACATCTGGAATTGACAACAAGTTTACAACCGTGCAATTCACAGGAG 426
|||| ||||| ||||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 253 AGGTATTTGAGGGAACATCTGGAATTGACAACAAGTACACAACTGTGCAATTTACAGGAG 312
Query 427 AGGTTTTGAAAACACCTGTATCATTGGACATGCTTGGGCGCATATTTAACGGTTCAGGAA 486
||||||||||||| ||||| || ||||| |||||||| ||||| || || |||||||| |
Sbjct 313 AGGTTTTGAAAACTCCTGTTTCTTTGGATATGCTTGGTCGCATCTTCAATGGTTCAGGGA 372
Query 487 AGCCGATTGATAATGGCCCTCCTAT-TCTGCCAGAAGCATACCTTG-ATATTTCAGGAAG 544
|||| ||||| ||||| || ||||| | |||| || |||||| ||| ||||||| |||||
Sbjct 373 AGCCCATTGACAATGGTCCACCTATAT-TGCCCGAGGCATAC-TTGGATATTTCTGGAAG 430
Query 545 TTCAATCAACCCCAGTGAAAGAACCTATCCTGAAGAGATGATACAGACAGGCATATCGAC 604
||| ||||| |||||||| ||||||||||||||||||||||| ||||| || ||||| ||
Sbjct 431 TTCTATCAATCCCAGTGAGAGAACCTATCCTGAAGAGATGATTCAGACGGGGATATCCAC 490
Query 605 CATCGATGTCATGAATTCCATTGCTC-GTGGACAGAAGATTCCACT-TTTCTCTGCTGCT 662
||| ||||||||||| || || || | | |||||||||||||| || ||| ||||||||
Sbjct 491 CATTGATGTCATGAACTCTATCGC-CAGAGGACAGAAGATTCCCCTCTTT-TCTGCTGCA 548
Query 663 GGTCTTCCACATAATGAAATAGCTGCTCAGATTTGTCGTCAGGCTGGTCTAGTCAAGCGT 722
|||||||| || |||||||| |||||||||||||| |||||||||||| | || ||||||
Sbjct 549 GGTCTTCCCCACAATGAAATTGCTGCTCAGATTTGCCGTCAGGCTGGTTTGGTTAAGCGT 608
Query 723 TTGGAAAAGACTGTTGATCTACTTGAGGATCATGGAG-AGGACAATTTTGCAATTGTGTT 781
|| || ||| | | | |||| || ||| | || | || | || || || || ||||||||
Sbjct 609 TTAGAGAAGTCGGATAATCTCCTCGAGCACCAAG-AGGATGATAACTTCGCCATTGTGTT 667
Query 782 TGCAGCTATGGGTGTGAACATGGAGACAGCTCAGTTCTTCAAGCGAGATTTTGAAGAAAA 841
||||| |||||||||||||||||||| || || || || || || ||||| || || ||
Sbjct 668 CGCAGCAATGGGTGTGAACATGGAGACTGCGCAATTTTTTAAACGTGATTTCGAGGAGAA 727
Query 842 TGGATCAATGGAGAGAGTTACTCTTTTCCTGAACCTGGC----C----A--AT--GACCC 889
||| || ||||||||||| ||||||||||| ||| |||| | | | |||||
Sbjct 728 TGGGTCGATGGAGAGAGTGACTCTTTTCCTTAACTTGGCAAGTCTCGCAGCAAACGACCC 787
Query 890 AACCATTGAGAGAATCATCACTCCTCGAATTGCCCTCACAACAGCTGAATATCT-GGCTT 948
|| |||||| | |||||||||||||| ||||| || ||||| ||||| || || ||| |
Sbjct 788 CACTATTGAGCGTATCATCACTCCTCGTATTGCTCTTACAACGGCTGAGTA-CTTGGCAT 846
Query 949 ATGAATGTGGGAAACACGTCCTTGTTATAT-TGACGGATATGAGTTCTTATGCTGATGCT 1007
|||||||||| || || |||||||| || | | || || |||||||| || |||||||||
Sbjct 847 ATGAATGTGGCAAGCATGTCCTTGTCAT-TCTCACAGACATGAGTTCCTACGCTGATGCT 905
Query 1008 CTTCGTGAGGTTTCCGCTGCCCGAGAAGAGGTTCCCGGAAGACGTGGATATCCAGGTTAT 1067
||||||||||| || |||||||| ||||| || || ||||| ||||| || ||||||||
Sbjct 906 CTTCGTGAGGTCTCTGCTGCCCGTGAAGAAGTGCCTGGAAGGCGTGGTTACCCAGGTTAC 965
Query 1068 ATGTACACTGATCTTG-CAACTATTTATGA-ACGTGCTGGGCGTATAGAAGGAAGAAAAG 1125
|||||||| || |||| | ||||| || || | | || ||||| || |||||||| ||||
Sbjct 966 ATGTACACCGA-CTTGGCTACTATATACGAGA-GAGCGGGGCGAATTGAAGGAAGGAAAG 1023
Query 1126 GTTCCATCACCCAAATTCCAATCCTCACTATGCCCAATGACGATATCACTCATCCAACTC 1185
|||||||||| |||||||| || | || ||||| || || |||||||| ||||| || |
Sbjct 1024 GTTCCATCACTCAAATTCCCATTTTAACCATGCCAAACGATGATATCACACATCCCACAC 1083
Query 1186 CGGATCTTACTGGTTACATTACTGAAGGTCAGATATATATCGATAGGCAACTTCACAACA 1245
||||||| || || |||||||| || || || || ||||| || | ||||||||||| |
Sbjct 1084 CGGATCTGACAGGATACATTACAGAGGGCCAAATCTATATTGACCGACAACTTCACAATA 1143
Query 1246 GACAGATATATCCACCCATCAACGTGCTT-CCATCCCTTTCTCGT-TTAATGAAGAGTGC 1303
|||||||||| || || ||||| || ||| ||||| || |||||| ||| ||||||||||
Sbjct 1144 GACAGATATACCCTCCGATCAATGT-CTTGCCATCTCTGTCTCGTCTTA-TGAAGAGTGC 1201
Query 1304 TATCGGCGAGGGCATGACTCGTAAAGACCATTCTGATGTGTCGAACCAGCTGTATGCAAA 1363
|| || ||||| |||||||| | ||||| |||||||| || || || ||||||| ||
Sbjct 1202 CATTGGTGAGGGTATGACTCGCAGGGACCACTCTGATGTTTCTAATCAATTGTATGCCAA 1261
Query 1364 TTATGCAATCGGGAAAG-ATGTTCAAGCGATGAAAGCTGTTGTTGGAGAAGAAGCACTTT 1422
|| || || || |||| | || || || |||||||| || |||||||||||||| ||||
Sbjct 1262 CTACGCTATTGG-AAAGGACGTCCAGGCCATGAAAGCCGTGGTTGGAGAAGAAGCTCTTT 1320
Query 1423 CTTCAGAGGATTTGCTTTATCTAGAGTTTTTGGATAAGTTTGAGAGGAAGTTTGTGA-TG 1481
|||| |||||| |||| ||||| ||||| ||||| ||||| ||||||||||||||| |
Sbjct 1321 CTTCCGAGGATCTGCTATATCTGGAGTTCTTGGACAAGTTCGAGAGGAAGTTTGTGGCT- 1379
Query 1482 CAAGGAGCTTATGATACACGCAACATCTTCCAGTCGCTGGACTTAGCTTGGACATTGCTC 1541
|| |||||||| ||||| || || ||||||||||| || ||| | || |||||| | ||
Sbjct 1380 CAGGGAGCTTACGATACCCGGAATATCTTCCAGTCACTCGACCTGGCATGGACACTCCTG 1439
Query 1542 CGTATCTTCCCACGGGAGCTT-CTTCATCGTATCCCTGC-AAAGACACTTGACCAATTCT 1599
|| |||||||| || ||| || ||||| ||||| || || ||| || ||||| || || |
Sbjct 1440 CGAATCTTCCCCCGTGAG-TTGCTTCACCGTATACCGGCGAAA-ACCCTTGATCAGTTTT 1497
Query 1600 ACAGCCGCGACTCAACCA 1617
||||||||||| | ||||
Sbjct 1498 ACAGCCGCGACACCACCA 1515
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71381119130
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5