BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76040.2
Length=1945
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339776 jgi|Araly1|339776|fgenesh1_pg.C_scaffold_2001875 2423 0.0
Ahg474202 jgi|Araly1|474202|fgenesh2_kg.1__4156__AT1G50700.1 381 1e-104
Ahg480614 jgi|Araly1|480614|fgenesh2_kg.3__3315__AT2G17290.1 115 1e-24
Ahg326334 jgi|Araly1|326334|fgenesh1_pm.C_scaffold_6001554 93.5 5e-18
> Ahg339776 jgi|Araly1|339776|fgenesh1_pg.C_scaffold_2001875
Length=2793
Score = 2423 bits (1312), Expect = 0.0
Identities = 1455/1525 (95%), Gaps = 5/1525 (0%)
Strand=Plus/Plus
Query 152 ATGGGATTTTGCTTCTCCAAATT-TGGCAAATCACAAACACATGAGATCCCAATCTCTTC 210
||||| ||||||||||||||||| | ||||||||||||| ||||||||||||||||||||
Sbjct 1 ATGGGTTTTTGCTTCTCCAAATTCT-GCAAATCACAAACCCATGAGATCCCAATCTCTTC 59
Query 211 CTCTTCCGATTCAAGCCCTCCTCATCACTACCAACCTCTCCCTAAACCAACTGTTTCTCA 270
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CTCTTCCGATTCTAGCCCTCCTCATCACTACCAACCTCTCCCTAAACCAACTGTTTCTCA 119
Query 271 AGGTCAAACCAGTAATCCCACCTCCAATCCTCAGCCCAAACCCAAACCCGCTCCTCCTCC 330
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 120 GGGTCAAACCAGTAATCCCACCTCCAATCCTCAGCCCAAACCCAAACCGGCTCCTCCTCC 179
Query 331 TCCTCCGTCAACATCCTCCGGTTCACAAATCGGTCCAATCCTAAACCGACCAATGATCGA 390
|||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 180 TCCT---TCATCATCCTCCGGTTCTCAAATCGGTCCAATCCTAAACCGACCAATGATCAA 236
Query 391 TCTCTCAGCTCTCTACGACCTCCACAAAGAACTCGGCCGTGGCCAATTCGGAATCACTTA 450
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 237 TCTCTCAGCTCTCTACGACCTCCACAAAGAACTAGGCCGTGGCCAATTCGGAATCACTTA 296
Query 451 CAAATGCACGGACAAATCCAACGGTCGAGAATACGCCTGCAAATCCATCTCAAAACGTAA 510
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 297 CAAATGTACGGACAAATCCAACGGCCGAGAATACGCCTGCAAATCCATCTCAAAACGTAA 356
Query 511 ACTCATACGTCGCAAAGACATCGAAGACGTGAGACGTGAGGTCATGATCTTGCAACACCT 570
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 357 ACTCATACGTCGCAAAGACATCGAAGACGTGAGACGTGAGGTCATAATCTTGCAACACCT 416
Query 571 TACTGGTCAACCAAACATAGTCGAGTTTCGAGGCGCGTATGAAGACAAAGACAATCTTCA 630
|||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 417 TACTGGTCAACCGAACATCGTCGAGTTTCGAGGTGCGTATGAAGACAAAGACAATCTTCA 476
Query 631 TTTGGTTATGGAGCTCTGTTCTGGAGGAGAGCTTTTTGATCGTATTATCAAGAAAGGAAG 690
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 477 TTTGGTTATGGAGCTCTGTTCTGGAGGAGAGCTGTTTGATCGTATCATCAAGAAAGGAAG 536
Query 691 TTACTCTGAGAAAGAAGCTGCTAATATCTTCAGACAGATCGTTAATGTTGTTCATGTTTG 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TTACTCTGAGAAAGAAGCTGCTAATATCTTCAGACAGATCGTTAATGTTGTTCATGTTTG 596
Query 751 TCACTTCATGGGCGTTGTTCATAGAGACTTAAAGCCTGAGAATTTCTTGCTTGTTAGTAA 810
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TCATTTCATGGGCGTTGTTCATAGAGACTTAAAGCCTGAGAATTTCTTGCTTGTTAGTAA 656
Query 811 CGAAGAAGATTCTCCAATCAAAGCAACAGATTTTGGACTCTCTGTTTTCATCGAAGAAGG 870
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 657 TGAAGAAGATTCTCCCATCAAAGCAACAGATTTTGGCCTCTCTGTTTTCATCGAAGAAGG 716
Query 871 TAAAGTGTATAGAGATATAGTTGGGAGCGCATACTACGTTGCACCTGAAGTTCTACATCG 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TAAAGTGTATAGAGATATAGTTGGGAGCGCATACTACGTTGCACCTGAAGTTCTACATCG 776
Query 931 AAACTACGGGAAAGAAATCGATGTATGGAGCGCGGGTGTTATGCTTTACATTCTTCTCAG 990
|| |||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 777 AAGCTACGGGAAAGAGATCGATGTATGGAGTGCAGGTGTCATGCTTTACATTCTTCTCAG 836
Query 991 TGGTGTTCCTCCATTTTGGGGAGAGACCGAGAAGACTATATTTGAGGCGATCTTAGAAGG 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TGGTGTTCCTCCATTTTGGGGAGAGACCGAGAAGACTATATTTGAGGCGATCTTAGAAGG 896
Query 1051 AAAGCTGGATCTTGAAACTTCTCCTTGGCCTACTATATCGGAAAGCGCAAAAGATTTGAT 1110
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 CAAGCTGGATCTTGAAACTTCTCCTTGGCCTACTATATCGGAAAGCGCAAAAGATTTGAT 956
Query 1111 AAGAAAGATGTTGATAAGAGATCCTaaaaaaaGGATAACCGCAGCTGAAGCACTTGAGCA 1170
||||| ||||||| || |||||||||||||||||| |||||||||||||||||||||||
Sbjct 957 TAGAAAAATGTTGACAATAGATCCTAAAAAAAGGATTACCGCAGCTGAAGCACTTGAGCA 1016
Query 1171 TCCATGGATGACAGACACCAAAATTTCTGATAAACCAATCAATAGTGCTGTTCTTGTTAG 1230
||||||||||||| ||| |||||| || |||||||||||| |||| ||||||||| ||||
Sbjct 1017 TCCATGGATGACAAACAGCAAAATATCAGATAAACCAATCGATAGCGCTGTTCTTATTAG 1076
Query 1231 GATGAAGCAATTCCGCGCGATGAACAAGCTCAAGAAACTTGCCTTGAAGGTGATAGCGGA 1290
||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 GATGAAGCAGTTCCGTGCAATGAACAAGCTCAAGAAACTTGCCTTGAAGGTGATAGCGGA 1136
Query 1291 AAACTTATCGGAAGAAGAGATAAAAGGATTAAAGCAAACGTTTAAGAACATGGATACAGA 1350
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1137 AAACTTATCGGAAGAAGAGATAAAGGGATTAAAGCAAATGTTTAAGAACATGGATACAGA 1196
Query 1351 TGAAAGTGGCACCATCACTTTTGATGAACTAAGAAACGGGTTACATCGTCTTGGATCTAA 1410
|| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1197 TGGAAGTGGCACAATCACTTTTGATGAACTAAGAAGCGGGTTACATCGTCTTGGATCTAA 1256
Query 1411 GCTTACGGAGTCTGAAATCAAACAACTCATGGAAGCTGCTGATGTGGACAAAAGTGGGAC 1470
|||| | || ||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1257 GCTTTCAGAATCTGAAATCAAACAACTCATGGAAGCTGCCGATGTAGACAAAAGTGGGAC 1316
Query 1471 GATTGATTACATTGAGTTTGTAACTGCAACAATGCATCGTCATAGATTGGAGAAAGAAGA 1530
|||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1317 GATTGACTACATTGAGTTTATAACTGCAACAATGCATCGCCATAGATTGGAGAAAGAAGA 1376
Query 1531 GAATTTGATAGAAGCATTTAAATACTTCGACAAAGACAGAAGCGGTTTTATCACAAGGGA 1590
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||
Sbjct 1377 GAATTTGATAGAAGCATTTAAATTCTTCGACAAAGACAGAAGCGGATTTATCACAAGAGA 1436
Query 1591 CGAGCTTAAACACTCCATGACTGAGTATGGCATGGGTGATGATGCGACCATAGATGAAGT 1650
|||||||||||| ||||||||| |||| || |||||||||||||||||||||||||||||
Sbjct 1437 CGAGCTTAAACATTCCATGACTCAGTACGGTATGGGTGATGATGCGACCATAGATGAAGT 1496
Query 1651 TATCAATGATGTTGATACCGACAAT 1675
| |||||||||||||| | ||||||
Sbjct 1497 TCTCAATGATGTTGATGCGGACAAT 1521
> Ahg474202 jgi|Araly1|474202|fgenesh2_kg.1__4156__AT1G50700.1
Length=1921
Score = 381 bits (206), Expect = 1e-104
Identities = 751/1004 (75%), Gaps = 78/1004 (8%)
Strand=Plus/Plus
Query 552 TCATGATCTTGCAACACCTT-ACTGGTCAACCAAACATAGTCGAGTTTCGAGGCGCGTAT 610
||| |||| |||| || || | ||| ||||| ||||| || |||| | ||| || |||
Sbjct 642 TCA-GATCATGCAGCA-TTTGAGTGGACAACCTAACATTGTTGAGTATAAAGGAGCTTAT 699
Query 611 GAAGACAAAGACAATCT-T-CATTTGGTTATGGAGCTCTGTTCTGGAGGAGAGCTT-TTT 667
||||| ||| || || | |||||||||||||||| ||| |||| || || || |||
Sbjct 700 GAAGA-TGAGA-AAGCTGTGAATTTGGTTATGGAGCTTTGTGCTGGTGGTGA-ATTGTTT 756
Query 668 GATCGTATTATCAAG-AAA-GGA-AGTTACTCTGAGAAAGAAGCTGCTAATATCTT-CAG 723
||| | ||| | || ||| ||| | |||| ||||| || ||||||| | | || ||
Sbjct 757 GATAGAATT-T-TAGCAAAGGGACA-TTACAGTGAGAGAGCAGCTGCTTCTGT-TTGTAG 812
Query 724 ACAGATCGTTAATGTTGTTC-ATGTTTGTCACTTCATGGGCGTTG-TTCATAGAGACTTA 781
|||||| |||||||||| || | ||||||| |||||||| | || | ||||||||||||
Sbjct 813 ACAGATTGTTAATGTTG-TCAACATTTGTCATTTCATGGGTG-TGATGCATAGAGACTTA 870
Query 782 AAGCCTGAGAATTTCTTGCTTGT-TAGTAACGA--AGAAGATTCTCCAATCAAAGCAACA 838
|||||||||||||||||| || | ||| || || ||||| ||| | | ||||| ||
Sbjct 871 AAGCCTGAGAATTTCTTG-TTATCTAGCAAAGATGAGAAGGCTCTT-ATT-AAAGCCACT 927
Query 839 GATTTTGGACTCTCTGT-TTTCATCGAAGAAGGTAAAGTGTATAGAGATATAGTTGGGAG 897
||||| ||| | || || ||| || |||||||| | |||||||| || ||||||||||||
Sbjct 928 GATTTCGGATTATCGGTCTTT-ATTGAAGAAGGGAGAGTGTATAAAGGTATAGTTGGGAG 986
Query 898 CGCATACTACGTTGCACCTGAAGTTCT-ACATCGAA-ACTACGGGAAAGAAATCGATGTA 955
||||| || || || ||||||||| | | | || | | ||||| |||||||||||| ||
Sbjct 987 TGCATATTATGTAGCTCCTGAAGTTTTGA-AGCGTAGA-TACGGTAAAGAAATCGATATA 1044
Query 956 TGGAGCGCGGGTGTTATGCTTTACATTCTTCTCAGTGGTGTTCCTCCATTTTGGGGAGAG 1015
||||| || || |||| || |||||||| || || ||||| ||||| ||||||| ||
Sbjct 1045 TGGAGTGCTGGAATTATACTATACATTCTACTTAGCGGTGTGCCTCCGTTTTGGGCTGAA 1104
Query 1016 ACCGAGAA-GACTATATTTGAGGCGATCTTAGAAGG--AAAGCTGGATCTT-GAAACTTC 1071
|||||||| | |||||||| || || || ||||| ||| | | | ||| ||| | |
Sbjct 1105 ACCGAGAAAGGG-ATATTTGATGCTATATTGGAAGGTGAAATC-G-A-CTTTGAATCC-C 1159
Query 1072 T-CCTTGGCCTACTATATCGGAA-AGCGCAAAAGATTTGATAAGAAAGA-TGTTGATA-A 1127
||||||||| | || || || || || ||||||||| || | | || |||||| | |
Sbjct 1160 AACCTTGGCCTTCAATTTCC-AATAGTGCTAAAGATTTGGTACGCA-GAATGTTGACACA 1217
Query 1128 GAGATCCTaaaaaaaGGATAACCGCAGCTGAAGCACTTGAGCATCCATGGATGACAGACA 1187
|||||| |||| | |||| | || ||||||| ||| ||||||||||| | | ||| |
Sbjct 1218 -AGATCCGAAAAGACGGATTTCTGCTGCTGAAGTTCTTCAGCATCCATGGCTAAGAGA-A 1275
Query 1188 CCA--A-AATT-TCTGATAAACCAATCAATAGTGCTGTTCTTGTTA-GGATGAAGCAATT 1242
| || || ||||| || || ||||||||||||| | | |||||||||||||
Sbjct 1276 GGTGGAGAAGCATCAGATAAGCCTATTGATAGTGCTGTTCTC-TCAAGGATGAAGCAATT 1334
Query 1243 CCGCGCGATGAACAAGCTCAAGAAACTTGCCTTGAAGGTGATAGCGGAAAAC-TT-AT-C 1299
| |||||||| || || ||||||||||| || ||||| || ||||| ||| || | |
Sbjct 1335 TAGAGCGATGAATAAACTAAAGAAACTTGCTTTAAAGGTCATTGCGGAGAACATTGACAC 1394
Query 1300 GGAAGAAGAGATAAAAGGATTAAAG-CAAACGTTTAAGAACATGGATACAGATGAA-AGT 1357
||||||| | || |||| |||||| | | |||| || || || ||||| || |||
Sbjct 1395 GGAAGAA-A--TACAAGGCTTAAAGGCGAT-GTTTGCTAATATAGACACAGAC-AATAGT 1449
Query 1358 GGCACCATCACTTTTGATGAACT-AA-GAAACGGGTTA-C-ATCGTCTTGGATCTAAGCT 1413
|| || ||||| | ||| ||||| || ||| || ||| | | || ||||| || ||
Sbjct 1450 GGTACAATCACATATGAAGAACTGAAAGAA--GGATTAGCCAAA--CTGGGATCAAAACT 1505
Query 1414 TACGGA-GTCTGAAATCAAACAACTCATGGAAGCTGCTGATGTGGACA-AAAGTGGGACG 1471
|| || | ||||| | ||||| |||||||| ||||||||||| || ||| |||| |
Sbjct 1506 CACTGAAG-CTGAAGTGAAACAGCTCATGGATGCTGCTGATGTTGATGGAAA-TGGGTCA 1563
Query 1472 ATTGATTACATTGAGTTTGTAACTGCAACAATGCATCGTCATAG 1515
|||||||||||||||||| | ||||||||||||||| | |||||
Sbjct 1564 ATTGATTACATTGAGTTTATTACTGCAACAATGCATAGACATAG 1607
> Ahg480614 jgi|Araly1|480614|fgenesh2_kg.3__3315__AT2G17290.1
Length=2289
Score = 115 bits (62), Expect = 1e-24
Identities = 194/255 (76%), Gaps = 20/255 (8%)
Strand=Plus/Plus
Query 770 CATAGAGACTTAAAGCCTGAGAATTTCTTGCTTG-TTAGTAACGAAGAAGATTCTCCAAT 828
|||||||||||||||||||||||||||||| ||| ||| ||| || || |||| | | |
Sbjct 934 CATAGAGACTTAAAGCCTGAGAATTTCTTG-TTGGTTAATAAGGATGATGATTTTTCTCT 992
Query 829 CAAAGCAACAGATTTTGGACTCTCTGTTTTCATCGAAGAAGGT-AAAGTGTAT-AGAG-A 885
|| || | |||||||| |||||||||||| || || ||| ||| | | | | || |
Sbjct 993 TAAGGCCATTGATTTTGGCCTCTCTGTTTTCTTCAAACCAGGCCAAA-TAT-TCA-AGGA 1049
Query 886 TATAGTTGGGAG-CGCATACTACGTTGCACCTGAAGTTCTACATCGAAAC-T-ACGGGAA 942
| ||||||| || | ||||||| ||||| ||||| ||||| | | |||| | | ||
Sbjct 1050 TGTAGTTGGAAGTC-CATACTATGTTGCTCCTGAGGTTCTTCTT--AAACATTATGGTCC 1106
Query 943 AGAAA-TCGATGTATGGAGC-GCGGGTGTTATGCTTTACATTCTT-CTCAGTGGTGTTCC 999
|||| | ||||| |||| | || |||||||| || |||||| || || |||||||| ||
Sbjct 1107 AGAAGCT-GATGTGTGGA-CTGCTGGTGTTATACTATACATT-TTACTAAGTGGTGTCCC 1163
Query 1000 TCCATTTTGGGGAGA 1014
|| ||||||| |||
Sbjct 1164 GCCTTTTTGGGCAGA 1178
> Ahg326334 jgi|Araly1|326334|fgenesh1_pm.C_scaffold_6001554
Length=1578
Score = 93.5 bits (50), Expect = 5e-18
Identities = 143/186 (77%), Gaps = 14/186 (8%)
Strand=Plus/Plus
Query 1554 ACTTCGACAAAGACAGA-AGCGGTTTTATCACAAGGGACGAGCTTA-AACACTCCATGAC 1611
|||| |||||||||| | ||||| | |||||||| ||| |||| || | || || | |
Sbjct 1361 ACTTTGACAAAGACA-ACAGCGGATATATCACAATGGAAGAGC-TAGAGCAAGCCCT-TC 1417
Query 1612 -TGAGTATGGCATGGGTGAT-G-ATGCGACCA-TAGATGAAGTTATCAATGATGTTGATA 1667
|||| ||||||| ||| | | | || || || | ||| | || ||| ||||||
Sbjct 1418 GGGAGTTTGGCATGAACGATGGCA-GAGA-CATTA-AGGAAATCATTTCTGAGGTTGATG 1474
Query 1668 CCGACAATGATGGGAGGATAAACTACGAGGAATTTGTGGCGATGATGAGGAAAGG-AACT 1726
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1475 GAGACAACGATGGGAGGATAAACTACGAGGAATTTGTGGCGATGATGAGAAAAGGTAACC 1534
Query 1727 ACAGAT 1732
|||||
Sbjct 1535 -CAGAT 1539
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73095180155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5