BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76060.1
Length=751
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476757 jgi|Araly1|476757|fgenesh2_kg.2__1887__AT1G76060.1 785 0.0
> Ahg476757 jgi|Araly1|476757|fgenesh2_kg.2__1887__AT1G76060.1
Length=562
Score = 785 bits (425), Expect = 0.0
Identities = 504/542 (93%), Gaps = 5/542 (1%)
Strand=Plus/Plus
Query 4 GAGAGAGATGATGGCTGCGAAGCTTCAGAAATGGCGAAATCTGGCAGGTCGTCTAGATCT 63
|||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 GAGAGAAATGATGGCTACGAAGCTTCAGAAATGGCGAAATCTGGCCGGTCGTCTAGATCT 60
Query 64 GATGAATCGGAGCGGCGCTGTGTCGACGAGGCGGT-TCCTGCACGAAGGTCCAGATACCG 122
|||| |||||| | ||||| ||| |||||| || || |||||||||||||||| ||||
Sbjct 61 GATGTCTCGGAGAGATGCTGTATCGTCGAGGC-GTCTCTTGCACGAAGGTCCAGACACCG 119
Query 123 TGGAGGAGCTTCTCGAAAGACATCTAGCGAAGAAAGAGAAACCAATAATCGATC-ACGAT 181
|||||||||||||||| ||||||||||||||||||||||||||||| ||||| | |||||
Sbjct 120 TGGAGGAGCTTCTCGATAGACATCTAGCGAAGAAAGAGAAACCAATTATCGA-CGACGAT 178
Query 182 GAGGCTGAGTTTCTGAATAGACGGCGTCTGACGAGCACGCGCCGGGAAGCGTTGAGTTTG 241
||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 179 GAGGCCGAGTTTCTGAACAGGCGGCGTCTGACGAGCACGCGCCGGGAAGCGTTGAGTTTG 238
Query 242 TACAGAGACATATTACGAGCGACTCGGTTCTTCACGTGGATTGATTCCAGGGGAAATTTA 301
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
Sbjct 239 TACAGAGACATATTACGAGCGACTCGGTTCTTCACATGGACTGATTCCAGGGGAAATCTG 298
Query 302 TGGAGGGACGTGTTGAGAGAGAACGCGAGGAAGGAGTTTGAAGCGGCGCGATTTGAGACG 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TGGAGGGACGTGTTGAGAGAGAACGCGAGGAAGGAGTTTGAAGCGGCGCGATTTGAGACG 358
Query 362 GATCCGGAGGTTATCACAAGGCTTCTGATAGGTGGAAGCGACGCCGTTTCGTCTGCTTTA 421
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 359 GATCCGGAGGTTATCACAAGGCTTCTGATCGGTGGAAGCGACGCCGTTTCGTCTGCTTTA 418
Query 422 GATAAGCTTGCGGAGAAGCAAAGAGAGATGATTGAGAAACAACGCCGTGGTGATCAACGC 481
|||||||| |||||||||||||| |||||||| |||||| |||||||||||||||||| |
Sbjct 419 GATAAGCTCGCGGAGAAGCAAAGGGAGATGATCGAGAAAAAACGCCGTGGTGATCAACCC 478
Query 482 TGATTTGACGGATCATAGGGCATGAATGTTTCAACAGAATGATTCATC-GAGTTTAAAGT 540
||| ||||||||||||||| ||||||||||||||| ||||||| | | |||||||||||
Sbjct 479 TGAATTGACGGATCATAGGACATGAATGTTTCAACCGAATGATCCTTTTGAGTTTAAAGT 538
Query 541 GG 542
||
Sbjct 539 GG 540
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27677237742
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5