BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76065.1
Length=874
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316527 jgi|Araly1|316527|fgenesh1_pm.C_scaffold_2001560 392 2e-108
> Ahg316527 jgi|Araly1|316527|fgenesh1_pm.C_scaffold_2001560
Length=243
Score = 392 bits (212), Expect = 2e-108
Identities = 232/242 (96%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 71 ATGGTTCAATTAGATCTGCAGAGCTTTATTCTCCGGGCTCGAGTGCTTAAACTTTACCGA 130
||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1 ATGGTCCAATTGGATCTGCAGAGCTTTATCCTCCGGGCTCGAGTGCTTAAACTCTACCGA 60
Query 131 CAAGCATTGAAGATAGCTCACAGAGCTCCTGTTCATGTTAGAGGGGAACTGAAACAGACT 190
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 CAAGCATTGAAGATAGCTCACAGAGCTCCTGTTCATGTTAGAGGGGAATTGAAACAGACT 120
Query 191 GTTAGGCAAGAGATGGAAAAGAACAGAGACTGCAATGACAAACAAAAGATTCGGTATCTG 250
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 121 GTTAGGCAAGAGATGGAAAAGAACAGAGACTGTGACGACAAACAAAAGATTCGGTATCTG 180
Query 251 ATTAGTGAAGGTTTAGAGAGAATCAAAGGACTTGATGAGATGTTGGATATGCAGGGCCAT 310
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 181 ATTAGTGAAGGTTTAGAGAGAATTAAAGGACTTGATGAGATGTTGGATATGCAAGGCCAT 240
Query 311 TA 312
||
Sbjct 241 TA 242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32366356533
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5