BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76070.1
Length=1230
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476758 jgi|Araly1|476758|fgenesh2_kg.2__1888__AT1G76070.1 1502 0.0
> Ahg476758 jgi|Araly1|476758|fgenesh2_kg.2__1888__AT1G76070.1
Length=1141
Score = 1502 bits (813), Expect = 0.0
Identities = 977/1052 (93%), Gaps = 27/1052 (3%)
Strand=Plus/Plus
Query 22 ATTTTATAAAGTCGGCCGTATAAACACAAAGGTCTTTCTTCTTCCTTTTTAGCTCTCACA 81
||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||
Sbjct 1 ATTTTATAAAGTCGGCCGTATAAACACAAAGGTCTAGCTTCCTCCTTTTTA--ACTCACA 58
Query 82 TTTGACCAAAACTCCTCCAATCCAGGCA-TCATCGTTGACTTTTTCAAACTCATTTCCTC 140
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 59 TTTGACCAAAACTCCTCCAATCCAGGCACTCATCGTTGACTTTTTCAAACTCATTTCCTC 118
Query 141 TCTTTTTCCTTCTTCTCACATCA-TATTAGACCCAAACATAAAAAGAACGAAGAATCCTC 199
||||||||||||||||||||||| || |||| |||||||| |||| ||| |||||||||
Sbjct 119 TCTTTTTCCTTCTTCTCACATCATTA-TAGA-CCAAACAT-AAAA-AAC-CAGAATCCTC 173
Query 200 TGTTCTTGTCTGCGAATTTTGCTGTTGTGATCAGCGATGGACATTAAGCATCATACTTCA 259
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 174 TGTTCTTGTCTGCGAATTTTGCTGTTGTGATCATCGATGGACATTAAACATCATACTTCG 233
Query 260 ACTTCAAAACCTAAGAACAAGAACAAGCTTTTGAAGATGCTTCCTAAAGCGATGTCGTTT 319
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 234 ACTTCAAAACCTAAGAACAAGAACAAGCTTTTGAAGATGCTTCCTAAAGCTATGTCGTTT 293
Query 320 GGACATCGAGTTCCACCGTTTAGTCCCGGAAGAGATCTCCACCAC-A--ACAACCACCAT 376
|||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 294 GGACATCGTGTTCCACCGTTTAGTCCCGGAAGAGATCTCCACCACAACCACAACCACCAC 353
Query 377 AATTACACGGCGGCTAACAAAATGTTTTTCTCTGGTCCTATGGTTCCTTTGGTACCTAAC 436
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 354 AATAACACGGCGGCTAACAAAATGTTTTTCTCTGGTCCTATGGTTCCTTTGGTTCCTAAC 413
Query 437 GCGGCTCGGGTTAGAAGAAACAAAAGCGACGCTGTTTGGGACGAACCTACTTCACCTAAA 496
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 GCGGCTCGGGTAAGAAGAAACAAAAGCGACGCTGTTTGGGACGAACCTACTTCACCTAAA 473
Query 497 GTCTCTTGTATCGGTCAGATCAAGCTTGGTAAGTCTAAATG-CCCAACCGGTAAAAAGAA 555
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 474 GTCTCTTGTATCGGTCAGATCAAGCTTGGTAAGTCTAAATGTCCCA-CCGGTAAAAAGAA 532
Query 556 CAA-AGCA---C--CTTCATC-TCTGATTCCTAAAATCTCCAAAACGTCAACGTCGTCTT 608
||| | || | || | || | |||||||||||||||||||||| |||||||||||||
Sbjct 533 CAAGAACAAAACAACTCCGTCGT-TGATTCCTAAAATCTCCAAAACCTCAACGTCGTCTT 591
Query 609 TAACAAAAGAAGATGAAAAAGGTCGTCTTTCGAAGATCAAGAGTATCTTCTCGTTCTCGC 668
|||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 592 TAACCAAAGAAGATGAAAAAGGTCGTCTTTCGAAGATCAAGCGTATCTTCTCGTTCTCGT 651
Query 669 CGGCGAGTGGACGAAACACATCAAGAAAATCCCATCCTACCGCCGTCTCCGCCGCGGATG 728
||||||||||| |||||| |||||||||||| ||||| |||||||| |||||||||| ||
Sbjct 652 CGGCGAGTGGAGGAAACATATCAAGAAAATCTCATCCCACCGCCGTATCCGCCGCGGGTG 711
Query 729 AACATCCAGTTACGGTGGTTTCCACCGCGGCGGTGCCTTCGTTAGGTCAGATGAAGAAAT 788
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 712 AACATCCTGTTACGGTGGTTTCCACCGCGGCGGTGCCTTCCTTAGGTCAGATGAAGAAAT 771
Query 789 TCGCTAGCAGTCGTGATGCTTTAGGTG-ATTTTGATTGGGCGGTTGAGATGAAACATGAA 847
|||| ||||| |||||||||||||||| |||| |||||| |||||||||||||||||||
Sbjct 772 TCGCAAGCAGCCGTGATGCTTTAGGTGGATTT-GATTGGACGGTTGAGATGAAACATGAT 830
Query 848 GAAGAATCACCCG-CTGATCATCACCGTGGTTACTATTCTGACGACGACACCAGAGGAGC 906
|||||||| |||| ||||||||| ||||||||||||||| |||||||| | ||||||||
Sbjct 831 GAAGAATC-CCCGGCTGATCATCGCCGTGGTTACTATTCCGACGACGAGAAGAGAGGAGC 889
Query 907 TTACTTGAGATACGATGATGACGAGGATGAAGATGACATAATAATCCCTTTTTCAGCTCC 966
|||||| ||| |||| |||||||| |||||||| |||||||| ||||| || ||||||||
Sbjct 890 TTACTTTAGAGACGACGATGACGACGATGAAGACGACATAATTATCCCGTTCTCAGCTCC 949
Query 967 TTTAGGGTTAAAACCAAAGAAAGAAGTTAACTTGTGGAAGAGAAGAACCATGGATCCACC 1026
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 950 TTTAGGGTTAAAACCAAAGAAAGAAGTTAACTTATGGAAGAGAAGAACCATGGATCCACC 1009
Query 1027 AAAACCACTTCATCTTCAAACCATTTGA-TTA 1057
||||||||||||||||||||||| |||| |||
Sbjct 1010 AAAACCACTTCATCTTCAAACCACTTGAATTA 1041
Score = 97.1 bits (52), Expect = 3e-19
Identities = 54/55 (98%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 1085 AATTACTGCAGTTCAAATTGTATAATGATCATCATTCACAATGAGTCTGGATTTT 1139
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1037 AATTACTGCAGTTCAAATTGTATAATGATCATCATTCACAATGAATCTGGATTTT 1091
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45938114985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5