BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76080.1
Length=1257
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926998 jgi|Araly1|926998|scaffold_202559.1 1447 0.0
> Ahg926998 jgi|Araly1|926998|scaffold_202559.1
Length=949
Score = 1447 bits (783), Expect = 0.0
Identities = 895/949 (94%), Gaps = 8/949 (1%)
Strand=Plus/Plus
Query 48 ATCCCACACACACTACCACAAACAATGGCCACCGTCGCTAACTTCTTAGCCAAACCAATC 107
|||| ||||||||| | | || ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATCCTACACACACT--CTC--ACGATGGCCACCGTCGCTAACTTCTTAGCCAAACCAATC 56
Query 108 TCCACCGTAGTCCCACGGCCATCCTCCGCCGTTGCTTCGACCTCCTCCTTCGTATTCTTT 167
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 57 GCCACCGTAGTCCCACGGCCTTCCTCCGCCGTTGCTTCAACCTCCTCCTTCGTATTCTTT 116
Query 168 AACCATAAAACTAATC-CTCTGTTCCGGAGGAAAAACCTCCCGAAAAGATTATTCTCCGC 226
||||||||||| || | |||||||||||||| ||||||||||||||||| ||||||| ||
Sbjct 117 AACCATAAAACCAA-CTCTCTGTTCCGGAGGGAAAACCTCCCGAAAAGACTATTCTCGGC 175
Query 227 CGTGAAAATAAAGGCTGGAGCGGCGTCTCCGGGAAAGGTGGGTACACCACCGGCGAATGA 286
|||||| | ||||| ||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 176 TGTGAAAGTGAAGGCCGGAGCGGCGTCTCCGGGGAAGGTGGGTACACCCCCGGCGAAAGA 235
Query 287 CGAGAAGGTACAAAAGATTCACAGCGGAGAGGAATTCGACGTA-GCGTTGAAAAATGCGA 345
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
Sbjct 236 CGAGAAGGTACAAAAGATTCACAGCGGAGAGGAATTCGACG-AGGCGTTGAAAAATGCAA 294
Query 346 AGAGCAAACTCGTGGTTGCAGAGTTTGCTACGAGTAAGAGTGATCAGAGTAATAAGATAT 405
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 295 AGAGCAAACTTGTGGTTGCGGAGTTTGCTACGAGTAAGAGTGATCAGAGTAATAAGATAT 354
Query 406 ATCCGTTTATGGTGGAACTGAGCAGGACCTGTAACGACGTCGTTTTCTTGCTCGTCATGG 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 ATCCGTTTATGGTGGAACTGAGCAGGACCTGTAACGACGTCGTTTTCTTGCTCGTCATGG 414
Query 466 GTGATGAATCTGACAAGACCAGAGAACTCTGTCGGAGAGAGAAGATTGAGAAAGTTCCTC 525
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GTGATGAGTCTGACAAAACCAGAGAACTCTGTCGGAGAGAGAAGATTGAGAAAGTTCCTC 474
Query 526 ACTTTAGCTTTTATAAGAGCATGGAGAAAATACACGAGGAAGAAGGTATTGAACCGGACC 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 ACTTTAGCTTTTATAAGAGCATGGAGAAAATACACGAGGAAGAAGGTATTGAACCGGACC 534
Query 586 AGTTAATGGGAGACGTTCTATACTACGGAGACAACCACTCTGCGGTGGTGCAGCTGCACG 645
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 535 AGTTAATGGGAGACGTTCTATACTACGGAGACAACCACTCAGCGGTGGTGCAGCTGCACG 594
Query 646 GCCGACCTGACGTGGAAAAGCTGATCGACGAGAATCGCACTGGAGGCAAGCTGATCGTGC 705
| ||| |||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 595 GTCGAGCTGACGTGGAGAAGCTAATCGACGAGAATCGCACCGGAGGCAAGCTGATTGTGC 654
Query 706 TTGACGTTGGTCTAAAACATTGTGGTCCTTGCGTTAAAGTGTATCCGACCGTGCTGAAAC 765
| || || ||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 655 TCGATGTCGGTCTGAAACATTGTGGTCCTTGCGTTAAGGTGTATCCGACCGTGCTGAAAC 714
Query 766 TGTCCCGGTCAATGTCCGAGACAGTCGTATTCGCTAGAATGAACGGTGACGAGAACGATA 825
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 715 TGTCCCGGTCAATGTCGGAGACAGTCGTATTCGCTAGAATGAATGGTGACGAGAACGATA 774
Query 826 GTTGTATGGAGTTTCTCAAGGACATGAATGTTATCGAAGTTCCAACTTTCTTGTTCATTA 885
||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||
Sbjct 775 GTTGTATGGAGTTTCTCAAGGACATGAATGTGATTGAAGTTCCAACTTTCTTATTCATTA 834
Query 886 GAGACGGCGAGATTCGTGGCCGTTATGTTGGTTCCGGTAAAGGAGAACTCATTGGAGAGA 945
|||| || || ||| ||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 835 GAGATGGAGATATTTGTGGCCGATATGTTGGTTCCGGTAAAGGAGAACTCATCGGAGAGA 894
Query 946 TTCTTCGGTACTCAGGCGTTCGTGTCACTTATTAATTTGTATCAAAACT 994
|||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 895 TTCTTCGGTACTCAGGTGTTCGTGTCACTTATTAATTTGTATCAAAACT 943
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46967433744
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5