BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76090.1
Length=1373
Score E
Sequences producing significant alignments: (Bits) Value
Ahg926999 jgi|Araly1|926999|scaffold_202560.1 1720 0.0
Ahg472261 jgi|Araly1|472261|fgenesh2_kg.1__2215__AT1G20330.1 839 0.0
> Ahg926999 jgi|Araly1|926999|scaffold_202560.1
Length=1123
Score = 1720 bits (931), Expect = 0.0
Identities = 1049/1107 (95%), Gaps = 4/1107 (0%)
Strand=Plus/Plus
Query 106 AAA-AAATGGACTCGGTGGCTCTCTACTGCACCGCTGGTCTCATTGCCGGCGCCGTCTAC 164
||| |||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||
Sbjct 18 AAAGAAATGGACTCGGTGGCTCTCTACTGCACGGCTGGTCTCATCGCCGGCGCCCTCTAC 77
Query 165 TGGTTCATATGCGTCCTAGGTCCAGCAGAACGAAAAGGCAAACGAGCCTCT-GATCTCTC 223
||||||||||| ||| ||||||||||||| ||||| ||||||||||||| | ||||||||
Sbjct 78 TGGTTCATATGTGTCTTAGGTCCAGCAGAGCGAAAGGGCAAACGAGCCT-TAGATCTCTC 136
Query 224 CGGCGGCTCAATCTCCGCAGAAAAAGTCAAAGACAACTATAACCAATACTGGTCTTTCTT 283
||||||||||||| ||| || || |||||||||||||||||||||||||||||||||||
Sbjct 137 CGGCGGCTCAATCAACGCCGAGAACGTCAAAGACAACTATAACCAATACTGGTCTTTCTT 196
Query 284 CCGCAAACCAAAAGAGATCGAATCAGCCGAGAAAGTACCTGACTTCGTCGACACGTTCTA 343
|||| |||||||||||||||| | ||||||||||| |||||||||||||||||||||||
Sbjct 197 CCGCCGACCAAAAGAGATCGAAACCGCCGAGAAAGTTCCTGACTTCGTCGACACGTTCTA 256
Query 344 CAATCTTGTCACTGATATCTACGAGTGGGGATGGGGACAATCTTTCCATTTCTCTCCTCA 403
|||||| || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 CAATCTCGTAACCGATATCTACGAGTGGGGATGGGGACAATCTTTCCATTTCTCTCCTCA 316
Query 404 TGTCCCTGGAAAATCCGACAAAGACGCCACAAGAATCCACGAAGAAATGGCCGTCGATCT 463
| |||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 317 TATCCCCGGAAAATCCCACAAAGACGCCACAAGGATCCACGAAGAAATGGCCGTCGATCT 376
Query 464 CATCAAAGTGAAACCGGGACAAAAGATTCTTGACGCTGGTTGCGGCGTGGGTGGGCCGAT 523
|||||| |||||||| ||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 377 CATCAACGTGAAACCTGGACAAAAGATCCTCGACGCTGGTTGCGGCGTTGGTGGGCCGAT 436
Query 524 GAGAGCCATCGCGGCCCATTCCAAGGCCCAAGTCACTGGAATCACTATCAACGAGTACCA 583
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 437 GAGAGCCATCGCGGCCCATTCCAAGGCCCAAGTCACTGGAATCACCATCAACGAGTACCA 496
Query 584 AGTGCAACGAGCCAAGCTTCACAACAAGAAAGCTGGACTTGATTCTCTCTGCAACGTCGT 643
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 497 AGTGCAACGAGCCAAGCTTCACAACAAGAAAGCTGGACTTGATTCTCTTTGCAACGTCGT 556
Query 644 TTGTGGTAACTTTTTAAAGATGCCGTTCGATGAAAACACGTTTGACGGAGCTTACTCGAT 703
||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 557 TTGCGGTAACTTTTTAAAGATGCCGTTCGATGAAAACACGTTCGACGGCGCTTACTCGAT 616
Query 704 CGAAGCTACGTGTCACGCTCCTAAGCTCGAAGAAGTATACTCGGAGATCTTCAGAGTGAT 763
|||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 617 CGAAGCCACGTGTCACGCTCCTAAACTAGAAGAAGTATACTCAGAGATCTTCAGAGTGAT 676
Query 764 GAAACCAGGATCTTTGTTCGTGTCCTACGAATGGGTCACCACTGAAAAATACAGAGACGA 823
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 677 GAAACCAGGATCTTTGTTCGTGTCCTACGAGTGGGTCACCACTGAGAAATACAGAGACGA 736
Query 824 TGACGAAGAACACAAGGACGTGATTCAAGGGATCGAGAGAGGAGACGCACTTCCTGGACT 883
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 GGATGAAGAACACAAGGACGTGATTCAAGGGATCGAGAGAGGAGACGCACTTCCTGGACT 796
Query 884 AAGAAGCTACGCTGATATAGCCGTGACGGCGAAGAAAGTTGGGTTTGAGGTAGTGAAGGA 943
|||||||||| ||||| || | ||||||||||||||||||||||||||| || |||||
Sbjct 797 AAGAAGCTACAAAGATATCGCTGCGACGGCGAAGAAAGTTGGGTTTGAGGTTGTCAAGGA 856
Query 944 GAAAGATTTGGCTAAACCACCGTCTAAACCGTGGTGGAACCGGTTAAAGATGGGAAGGAT 1003
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 857 GAAAGATTTGGCTAAACCACCGTCTAAACCGTGGTGGAACCGGTTAAAGATGGGAAGGCT 916
Query 1004 TGCTTATTGGAGAAACCATGTTGTGGTTGTGATTCTTTCTGCTATTGGGGTTGCTCCTAA 1063
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 917 TGCTTATTGGAGAAACCATGTCGTGGTTGTGATTCTTTCTGCTATTGGGGTTGCTCCTAA 976
Query 1064 AGGAACTGTTGATGTTCATAAGATGTTGTTTAAGACTGCTGATTATTTGACCAGAGGTGG 1123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 AGGAACTGTTGATGTTCATAAGATGTTGTTTAAGACTGCTGATTATTTGACCAGAGGTGG 1036
Query 1124 TGAGACTGGAATCTTCTCTCCGATGCATATGATTCTCTGTAGAAAACCAGAGAAAGCTTC 1183
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TGAGACTGGAATCTTCTCGCCGATGCATATGATTCTCTGTAGAAAACCAGAGAAAGCTTC 1096
Query 1184 TGAATGAATGATTGAGAAtcttc-ttc 1209
||||||||||| ||||||||||| |||
Sbjct 1097 TGAATGAATGAATGAGAATCTTCCTTC 1123
> Ahg472261 jgi|Araly1|472261|fgenesh2_kg.1__2215__AT1G20330.1
Length=1358
Score = 839 bits (454), Expect = 0.0
Identities = 916/1134 (81%), Gaps = 51/1134 (4%)
Strand=Plus/Plus
Query 64 AACGtctctctctattcctctgct-tctctct-ttctc-C-CTGTGA--AAAAATGGACT 117
||| ||||||||| | |||| || ||||||| | ||| | || | | |||||||||||
Sbjct 45 AAC-TCTCTCTCT-CT-CTCT-CTCTCTCTCTCTCCTCACTCT-TAACGAAAAATGGACT 99
Query 118 CGGTGGCTCTCTACTGCACC-GCTGGTCTCATTGCCGGCGCCGTCTACTGGTTCATATGC 176
| | | |||| || |||| || | |||| | |||| || ||||||||||| | |||
Sbjct 100 CTCTAACACTCTTCTTCACCGGC-GCTCTCGTCGCCGTCGGTATCTACTGGTTCCTCTGC 158
Query 177 GTCCTAGGTCCAGCAGAACGAAAAGGCAAACGAGCCTCT-GATCTCTCCGGCGGCTCAAT 235
||||| ||||||||||| || ||||||||||||||| | ||||||||||||||||||||
Sbjct 159 GTCCTCGGTCCAGCAGAGCGTAAAGGCAAACGAGCC-GTAGATCTCTCCGGCGGCTCAAT 217
Query 236 CTCCGCAGAAAAAGTCAAAGACAACTATAACCAATACTGGTCTTTCTTCCGCAAACCAAA 295
|||||| || |||||| | ||||| || || || |||||||||||||||||| |||||
Sbjct 218 CTCCGCCGAGAAAGTCCAGGACAATTACAAACAGTACTGGTCTTTCTTCCGCCGTCCAAA 277
Query 296 AGAGATCGAATCAGCCGAGAAAGTACCTGACTTCGTCGACACGTTCTACAATCTTGTCAC 355
||| |||||| | ||||||||||| || |||||||||||||| ||||||||||| |||||
Sbjct 278 AGAAATCGAAACCGCCGAGAAAGTTCCAGACTTCGTCGACACATTCTACAATCTCGTCAC 337
Query 356 TGATATCTACGAGTGGGGATGGGGACAATCTTTCCATTTCTCTCC-TCATGTCCCTGGAA 414
|| |||||||||||||||||||||||||| ||||| ||||| || ||| |||| ||||
Sbjct 338 CGACATCTACGAGTGGGGATGGGGACAATCCTTCCACTTCTCACCATCA-ATCCCCGGAA 396
Query 415 AATC-CGACAAAGACGCCACAAGAATCCACGAAGAAATGGCCGTCGATCTCATCAAAGTG 473
|||| | ||||||||||||| | |||||||||| |||||||| ||||| ||| |||
Sbjct 397 AATCTC-ACAAAGACGCCACGCGCCTCCACGAAGAGATGGCCGTAGATCTGATCCAAGCC 455
Query 474 AAACCGGGACAAAAGATTCTTGACGCT-GGTTGCGGCGTGGGTGGGCCGATGAGAGCCAT 532
||||| || |||||||| || |||| | || |||||||| || || |||||| |||| ||
Sbjct 456 AAACCTGGTCAAAAGATCCTAGACG-TCGGATGCGGCGTCGGCGGTCCGATGCGAGCGAT 514
Query 533 CGCGGCCCATTC-CAAGGCCCAA-GTCA-CTGGAATCACTATCAACGAGTACCAAGTGCA 589
|| | || || | | | | || || | ||| || || || |||||||| || ||| |
Sbjct 515 TGCATCTCACTCGCGA-G-CTAACGT-AGTTGGGATTACGATAAACGAGTATCAGGTG-A 570
Query 590 AC-GAGCCAAG-CTTCACAACAAGAAAGCTGGACTTGATTCTCTCTGCAACGTCGTTTGT 647
|| ||| | | || ||||| |||||||||||||| || | || ||| | ||||| |||
Sbjct 571 ACAGAG-CGCGTCTCCACAATAAGAAAGCTGGACTCGACGCGCTTTGCGAGGTCGTGTGT 629
Query 648 GGTAACTTTTTAAAGATGCCGTTCGATGAAAACACGTTT-GACGGAGCTTACTCGATCGA 706
|||||||| | |||||||||||||||| |||| |||| ||||| ||||| ||||||||
Sbjct 630 GGTAACTTCCTCCAGATGCCGTTCGATGACAACA-GTTTCGACGGTGCTTATTCGATCGA 688
Query 707 AGCTACGTGTCACGCTCCTAAGCTCGAAGAAGTATACTCGGAGATCTTCAGAGTGATGAA 766
|| ||||||||||| || ||| | |||||||| ||| | ||||||| ||| ||| ||||
Sbjct 689 GGCCACGTGTCACGCGCCGAAGTTAGAAGAAGTGTACGCAGAGATCTACAGGGTGTTGAA 748
Query 767 ACCAGGATCTTTGT-TCGTGTCCTACGAATGGGTCACCACTGAAAAATACAGAGAC-GAT 824
||| |||||| ||| | || || ||||| ||||| || || || |||| | || | ||
Sbjct 749 ACCCGGATCTATGTAT-GTATCGTACGAGTGGGTAACGACGGAGAAATTTA-AGGCGGAG 806
Query 825 GACGAAGAACACAAGGACGTGATTCAAGGGATCGAGAGAGGAGACGCACTT-CCTGGACT 883
|| || |||||| ||| || ||||||||||||||||||||||| || || ||||| ||
Sbjct 807 GATGATGAACACGTGGAGGTAATTCAAGGGATCGAGAGAGGAGATGC-GTTACCTGGTCT 865
Query 884 AAGAAGC-TACGCT-GATATAGCCGTGACGGCGAAGAAA-GTTGGGTTTGAGGTAGTGAA 940
|| || |||| | |||||||| | ||| || || ||| |||||||||||| |||||||
Sbjct 866 TAG-GGCTTACG-TGGATATAGCGGAGACTGCTAA-AAAGGTTGGGTTTGAGATAGTGAA 922
Query 941 GGAGAAAGATTTGGCTAAACCACCGTCTAAACCGTGGTGGAAC-CGG-TTAAAGATGGGA 998
|||||| ||| |||| | |||||| |||| ||||||||| || || || ||||||||
Sbjct 923 GGAGAAGGATCTGGCGAGTCCACCGGCTAAGCCGTGGTGG-ACTAGGCTT-AAGATGGGT 980
Query 999 AGGATTGCTTATTGGAGAAACCATGTTGTGGTTGTGATTCTT-TCTGCTATTGGGGTTGC 1057
|| ||||||||||||| || || |||||||| |||| || |||||| |||| |||||
Sbjct 981 CGGCTTGCTTATTGGAGGAATCACATTGTGGTTCAGATT-TTGTCTGCTGTTGGAGTTGC 1039
Query 1058 TCCTAAAGGAACTGTTGATGTTCATAAGATGTTGTTTAAGACTGCTGATTATTTGACCAG 1117
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1040 TCCTAAAGGAACTGTTGATGTTCATGAGATGTTGTTTAAGACTGCTGATTATTTGACCAG 1099
Query 1118 AGGTGGTGAGACTGGAATCTTCTCTCCGATGCATATGATTCTCTGTAGAAAACC 1171
||| ||||| || ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1100 AGGAGGTGAAACCGGAATATTCTCTCCGATGCATATGATTCTCTGCAGAAAACC 1153
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51389692116
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5