BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76100.1
Length=782
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927000 jgi|Araly1|927000|scaffold_202561.1 769 0.0
> Ahg927000 jgi|Araly1|927000|scaffold_202561.1
Length=557
Score = 769 bits (416), Expect = 0.0
Identities = 509/554 (92%), Gaps = 5/554 (1%)
Strand=Plus/Plus
Query 20 CCCAAAAAGTAAAGAAAATGGCCGCAATTACATCAGCTACCGTCACCATCCCTTCTTTCA 79
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 5 CCCAAAAAATAAAGAAAATGGTCGCAATTACATCAGCTACCGTCACCATCCCTTCTTTAA 64
Query 80 CCGGCCTAAAGCTCGCCGTCAGCTCAAAACCTAAGACATTATCCACCATCAGTAGATCCA 139
||||||| ||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 65 CCGGCCTCAAGCTCGCCGTCAGCTCAAAACCTACGACATTATCCACCACCATTAGATCCT 124
Query 140 CTTCCGCCACCAGGGCGCCACCTAAGCTCGCTTTGAAGTCCTCTTTGAAGGATTTCGGTG 199
| ||||| |||||| || ||||||||||| || ||||||||||||||||||||||||| |
Sbjct 125 CCTCCGCTACCAGGACGGCACCTAAGCTCTCTGTGAAGTCCTCTTTGAAGGATTTCGGCG 184
Query 200 TCATCGCAGTGGCAACAGCAGCTTCGATCGTTTTAGCTGGAAATGCGATGGCCATGGAGG 259
||||||| || ||||||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 185 TCATCGCCGTTGCAACAGCAGCTTCGATTGTTTTAGCCGGAAATGCAATGGCCATGGAGG 244
Query 260 TTCTTTTAGGATCCGACGACGGTTCCCTTGCTTTCGTACCATCTGAATTCACGGTGGCTA 319
||||| ||||||||||||| ||||| |||| ||||||||||||||||||||| |||||||
Sbjct 245 TTCTTCTAGGATCCGACGATGGTTCTCTTGTTTTCGTACCATCTGAATTCACAGTGGCTA 304
Query 320 AAGGAGAGAAGATCGTGTTCAAGAACAACGCAGGGTTCCCACATAACGTGGTGTTCGACG 379
||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 305 AAGGAGAGAAGATCGTGTTCAAGAACAACGCAGGGTTCCCACACAATGTTGTGTTCGACG 364
Query 380 AAGACGAGATCCCTAGTGGTGTGGACGCAAGCAAGATCTCGATGGATGAGACAGCGCTTC 439
|||||||||||||||||||||||||||| | ||||||||||||||| ||||||| |||||
Sbjct 365 AAGACGAGATCCCTAGTGGTGTGGACGCGACCAAGATCTCGATGGACGAGACAGAGCTTC 424
Query 440 TAAATGGTGCAGGG-GAGACTTACGAGGTTACTTTGACAGAGCCAGGCTCTTACGGTTTC 498
| |||||||| ||| |||| |||||||||||||||||||||||| ||||||||| |||||
Sbjct 425 TTAATGGTGC-GGGAGAGAGTTACGAGGTTACTTTGACAGAGCCTGGCTCTTACAGTTTC 483
Query 499 TATTGTGCGCCGCACCAGGGTGCTGGTATGGTTGGGAAACTCACCGTCAAGTA--AA-TT 555
|||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct 484 TATTGTGCGCCGCACCAGGGTGCTGGTATGGTCGGGAAACTCACCGTCAAGTAGTAAATT 543
Query 556 GTCTAGATATTCTC 569
|||| || | ||||
Sbjct 544 GTCTCGAGAATCTC 557
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28859048169
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5