BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76120.1
Length=1714
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476762 jgi|Araly1|476762|fgenesh2_kg.2__1892__AT1G76120.1 2161 0.0
Ahg921000 jgi|Araly1|921000|scaffold_102281.1 357 2e-97
Ahg472264 jgi|Araly1|472264|fgenesh2_kg.1__2218__AT1G20370.1 311 1e-83
> Ahg476762 jgi|Araly1|476762|fgenesh2_kg.2__1892__AT1G76120.1
Length=1642
Score = 2161 bits (1170), Expect = 0.0
Identities = 1414/1528 (93%), Gaps = 32/1528 (2%)
Strand=Plus/Plus
Query 1 TCGTCTTCAAGGGTTTCGACTTTTGTGCGGTAGCCATTAACGTTGTTGCAGAGGAAAGCT 60
|||||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 1 TCGTCTTCTAGGGTTTTGACTTTTGTTCGGTAGCCATTAACGTAGTTGCAGAGGAAAGCT 60
Query 61 GGAAAATAGAGAGTTCGATGAACTCTTGTTACTATAATGGAGGCTCAGGAGTTTGAAAAC 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 GGAAAATAGAGAGTTCGATGAACTCACACCACTATAATGGAGGCTCAGGAGTTTGAAAAC 120
Query 121 CGAGAGATTTCCCCCGGTTCGAGGTTCCTGATTGAGAATCAGATCAGAAGTAGCTCAATA 180
|||||||||| ||||||||||||||||||||| | ||||||||||||||| ||||||| |
Sbjct 121 CGAGAGATTTTCCCCGGTTCGAGGTTCCTGATCGTGAATCAGATCAGAAGAAGCTCAAAA 180
Query 181 TGTTGACAACTACCACCGATGAGGAAATAGACTTGTCCTGCGACGGAGGTGTCACGGAGC 240
||||||| || |||||||||||||||| |||| ||||||||| |||||||| ||||||||
Sbjct 181 TGTTGACCACCACCACCGATGAGGAAACAGACATGTCCTGCGGCGGAGGTGGCACGGAGC 240
Query 241 CTCAAAAAGTTGCTATAATCTTCGCGTTTTGTGGTGTAGGATACCAAGGAATGCAAAAGA 300
|||||||||||||||||||||| || ||||| ||||||||||||||||| ||||||||||
Sbjct 241 CTCAAAAAGTTGCTATAATCTTTGCCTTTTGCGGTGTAGGATACCAAGGGATGCAAAAGA 300
Query 301 ATCCCGGCGCGAAAACCATTGAAGGCGAGCTCGAAGAAGCTTTGTTTCATGCCGGAGCTG 360
|||||||||| |||||||||||||||||||| ||||||||| |||| |||||||||||||
Sbjct 301 ATCCCGGCGCCAAAACCATTGAAGGCGAGCTAGAAGAAGCTCTGTTCCATGCCGGAGCTG 360
Query 361 TACCGGAGTCCATTAGAGGCAAGCCAAAACTATACGATTTCGCACGATCTGCACGGACAG 420
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 361 TACCAGAGTCCATTAGAGGCAAGCCAAAACTATACGATTTCGCACGATCGGCACGGACCG 420
Query 421 ATAAAGGAGTTAGTGCTGTTGGACAAGTAGTTTCAGGTCGCTTTATCGTTGATCCACTTG 480
||||||||||||||||||| |||||||||||||| ||||| || | ||||||||||| ||
Sbjct 421 ATAAAGGAGTTAGTGCTGTGGGACAAGTAGTTTCCGGTCGATTCAACGTTGATCCACCTG 480
Query 481 GATTCGTGAATCGTCTCAATTCAAATCTCCCTAATCAGATTAGAATCTTCGGTTACAAGC 540
|||||||| |||||||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 481 GATTCGTGGATCGTCTCAATTCAAATCTCCCTAATCAGATTAGGATCTTCGGGTATAAGC 540
Query 541 ATGTAACGCCGTCGTTTAGCTCCAAGAAGTTTTGCGATCGAAGAAGGTATGTGTATCTGC 600
|||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 541 ATGTTACGCCGTCGTTTAGCTCCAAAAAGTTCTGCGATCGAAGAAGGTATGTGTATCTGC 600
Query 601 TTCCAGTGTTTGCTCTTGATCCAATCTCGCATCGTGATAGAGAAACAGTAATGGCTAGTT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTCCAGTGTTTGCTCTTGATCCAATCTCGCATCGTGATAGAGAAACAGTAATGGCTAGTT 660
Query 661 TGGGTCCGGGAGAGGAATATGTTAAGTGCTTTGAGTGCTCAGAGAGAGGTCGTAAGATTC 720
||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 661 TGGGTCCAGGAGAGGAATATGTTAAGTGTTTTGAGTGCTCGGAGAGAGGTCGTAAGATTC 720
Query 721 CTCCAGGTCTTGTGGGTAAATGGAAAGGTACCAACTTTGGGACTAAATCATTGGATTTTC 780
| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 721 C---AGGTCTTGTGGGTAATTGGAAAGGTACCAACTTTGTTACTAAATCATTGGATTTTC 777
Query 781 AGTCAGACATTTCGTCGAACAACTCTAGTGCATTAAGAAGTGACATCAAGATTGAAGCTT 840
|||||||||||| ||||||||||||||||||||| |||| ||| |||||||||||||||
Sbjct 778 AGTCAGACATTTTGTCGAACAACTCTAGTGCATTTAGAACTGATGTCAAGATTGAAGCTT 837
Query 841 TGAGTTCTAATTTAGCTGGCTTATGCTCAGTAGATGTTGAAGTAGGTAGGATACAAGAAG 900
||||||||||||| ||| ||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 838 TGAGTTCTAATTTGGCTAGCTTAAGCTCAGTAGATGTTGAAGTAGGTAGTATACAAGAAG 897
Query 901 ACAGTTGTAAATTGAATACAAATTCATCAGAGA----C--T--A-A-GGTAA----A-G- 944
|||||||||||||||||||||||||| |||||| | | | | || || | |
Sbjct 898 ACAGTTGTAAATTGAATACAAATTCAGCAGAGAAGATCAATGGAGAAGGAAATGTGATGG 957
Query 945 ---AG-CAA-G------TTTTGTTATGGTGAAAAGGAAAAGGAAAGGTTCAGTAGAATAC 993
|| ||| | |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 958 CTGAGACAAAGAGCAAGTTTTGTTATGGTGAAAAGGAAAAGGAAAGGTTCAATAGAATAC 1017
Query 994 TAAGTTGTTATGTTGGATCATATAATTTCCATAACTTCACTACAAGAACAAAAGCAGATG 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TAAGTTGTTATGTTGGATCATATAATTTCCATAACTTCACTACAAGAACAAAAGCAGATG 1077
Query 1054 ATCCGACTGCGAATCGTCAAATCATCTCCTTCACTGCTAATACTGTGATTAATCTTGATG 1113
||||| |||||||||||||||||||||||||||||||||| ||||| || ||||||||||
Sbjct 1078 ATCCGGCTGCGAATCGTCAAATCATCTCCTTCACTGCTAAAACTGTTATCAATCTTGATG 1137
Query 1114 GGATTGACTTTATCAAGTGTGAAGTCTTAGGCAAAAGCTTTATGCTTCATCAGATTCGGA 1173
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1138 GGATTGACTTTATTAAGTGTGAAGTCTTAGGCAAAAGCTTTATGCTTCATCAGATTCGAA 1197
Query 1174 AGATGATGGGTCTTGCTGTTGCAATCATGCGGAATTGTGCTTCTGAATCACTTATCCAAA 1233
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 1198 AGATGATGGGTCTTGCTGTTGCAATCATGAGGAATTGTGCTTCTGAATCACTTATCCAGA 1257
Query 1234 GTGCTTTCAGCAAGGATGTGAATATAACTGTACCAATGGCGCCAGAAGTTGGACTTTATC 1293
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
Sbjct 1258 CTGCTTTCAGCAAGGATGTGAATATAACTGTACCAATGGCGCCTGAAGTTGGACTCTACC 1317
Query 1294 TGGACGAATGCTTCTTCACGTCTTATAAC-AGAAACTTTGAAGACAGTCATGAAGAAGTG 1352
| |||||||||||||| |||||||||||| | ||| ||||||||||||||||||||||||
Sbjct 1318 TCGACGAATGCTTCTTTACGTCTTATAACGAAAAA-TTTGAAGACAGTCATGAAGAAGTG 1376
Query 1353 TCCATGGAAGCATACAAAGAAGAAGCTGAAGCATTCAAATTGAAGCATATCTATTCTCAT 1412
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1377 TCCATGGAAGCATACAAAGAAGAAGCTGAAGCATTCAAATTGAAGCATATTTATCCTCAT 1436
Query 1413 ATCGGCGCTACAGAGCGAAAATACGGAAATATGGCTCTTTGGTTACATTCCTTGAACTAT 1472
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1437 ATCTGCGCTACAGAGCGAAAATATGGAAATATGGCTCTTTGGTTACATTCCTTGAACTAT 1496
Query 1473 AGAAACTATCCAGACCTAAACTTTGGCA 1500
|||||||||||||||||||| |||||||
Sbjct 1497 AGAAACTATCCAGACCTAAATTTTGGCA 1524
Score = 93.5 bits (50), Expect = 5e-18
Identities = 84/98 (86%), Gaps = 11/98 (11%)
Strand=Plus/Plus
Query 1565 TCTCTAAGCAAAATGATGGAAGCTTAGTTTGAAGATTTTGACATTGTTTTTGTTATTGTT 1624
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1525 TCTCTAAGCAAAATGATGGAAGCTTAGTTTGAAGAT-----CATTGTTTTTGTTCTTGTT 1579
Query 1625 GGTTAATCCCAC-CATTT-TTGT-AACTTTTTAATCAA 1659
|||||| | | | ||| |||| ||||||||||||||
Sbjct 1580 GGTTAA-CT-ATTC-TTTCTTGTTAACTTTTTAATCAA 1614
> Ahg921000 jgi|Araly1|921000|scaffold_102281.1
Length=1757
Score = 357 bits (193), Expect = 2e-97
Identities = 479/614 (78%), Gaps = 32/614 (5%)
Strand=Plus/Plus
Query 246 AAAGTTGCTATAATCTTCGCGTTTTGTGGTGTAGGATACCAAGGAATGCAAAAGAATCCC 305
||||| || || || || |||||||| || ||||| || || ||||||||||||||||||
Sbjct 195 AAAGTCGCAATCATGTTTGCGTTTTGCGGAGTAGGCTATCAGGGAATGCAAAAGAATCCC 254
Query 306 GGCGCGAAAACCATTGAAGGCGAGCTCGAAGAAGCTTTGTTTCATGCCGGAGCTGTACCG 365
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 255 GGCGCCAAAACCATTGAAGGCGAGCTCGAAGAAGCGTTGTTCCATGCCGGAGCCGTACCT 314
Query 366 GAGTCC-ATTAGAGGCAAGCCAA-AACTATACGATTTCGCACGATCTGCACGGACAGATA 423
||| | || || ||| |||| || | ||||| | |||||||| || || || ||||
Sbjct 315 GAGGCTGATCGGAA-CAAACCAAGAAAT-TACGAATGGGCACGATCCGCCCGTACCGATA 372
Query 424 AAGGAGTTAGTGCTGTTGGACAAGTAGTTTCAGGTCGCTTT-ATCGTTGATCCACTTGGA 482
||||||| ||||| || |||||||| ||||| ||||| ||| || |||||||| | ||||
Sbjct 373 AAGGAGTGAGTGCGGTGGGACAAGTGGTTTCTGGTCGTTTTTAT-GTTGATCCGCCTGGA 431
Query 483 TTCGTGAATCGTCTCAATTCAAATCTCCCTAATCAGATTAGAATCTTCGGTTACAAGCAT 542
|| ||| | ||||||||||| || |||||| |||||||| | | || || ||||||| |
Sbjct 432 TTTGTGGAGCGTCTCAATTCGAAGCTCCCTGATCAGATTCGTGTGTTTGGATACAAGCGT 491
Query 543 GTAACGCCGTCGTTTAGCTCCAAGAAGTTTTGCGATCGAAGAAGGTATGTGTATCTGCTT 602
|| |||||||||||||||||||||| || || ||||| || |||||||||||||| ||
Sbjct 492 GTTGCGCCGTCGTTTAGCTCCAAGAAATTATGTGATCGGAGGAGGTATGTGTATCTAATT 551
Query 603 CCAGTGTTTGCTCTTGATCCAATCTCGCATCGTGATAGAGAAACAGTA-ATGGCTAGTTT 661
||||| |||||||| |||||| | || | | |||| ||| | | | |||| |||
Sbjct 552 CCAGTTTTTGCTCTGGATCCA-TG-CGTA-C---ATAGTGAAGCTG-AGATGGTTAGAAC 604
Query 662 GGGTCCGGGAGAGGAATATGTTAAGTGCT-TTGAGTGCTCAGAGAGAGGTCGTA-A-GAT 718
|| | || | |||||||| || || | |||||||||| |||| ||| | || | |||
Sbjct 605 GGATTTAGGTTACGAATATGTCAAATG-TGTTGAGTGCTCTGAGAAAGG-C-TACAAGAT 661
Query 719 TCCTCCAGGTCTTGTGGGTAAATGGAAAGGTACCAACTT-TGGGACTAAATCATTGGATT 777
||| ||| || |||||||| | | | | | || || || |||||||||||
Sbjct 662 TCCAGTTGGTGTTATGGGTAAA-G-ACAC-TG--A--TTGTGATACAAAATCATTGGAGA 714
Query 778 TTCAGTCAGACATTTCGTCGAACAACTCT-AGTGCATTAAGAAGTGACATCAAGAT-TGA 835
||||||||||||||||||||| ||||| | | ||||||| ||| ||| ||||| | |||
Sbjct 715 TTCAGTCAGACATTTCGTCGAGCAACTTTGA-TGCATTAGGAACTGATGTCAAG-TGTGA 772
Query 836 AGCTTTGAGTTCTA 849
| ||||||| ||||
Sbjct 773 AACTTTGAGCTCTA 786
> Ahg472264 jgi|Araly1|472264|fgenesh2_kg.1__2218__AT1G20370.1
Length=1934
Score = 311 bits (168), Expect = 1e-83
Identities = 312/382 (82%), Gaps = 8/382 (2%)
Strand=Plus/Plus
Query 246 AAAGTTGCTATAATCTTCGCGTTTTGTGGTGTAGGATACCAAGGAATGCAAAAGAATCCC 305
||||| || || || || |||||||| || ||||| || || ||||||||||||||||||
Sbjct 210 AAAGTCGCAATCATGTTTGCGTTTTGCGGAGTAGGCTATCAGGGAATGCAAAAGAATCCC 269
Query 306 GGCGCGAAAACCATTGAAGGCGAGCTCGAAGAAGCTTTGTTTCATGCCGGAGCTGTACCG 365
||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 270 GGCGCCAAAACCATTGAAGGCGAGCTCGAAGAAGCTTTGTTCCATGCCGGAGCAGTACCT 329
Query 366 GAGTCC-ATTAGAGGCAAGCCAA-AACTATACGATTTCGCACGATCTGCACGGACAGATA 423
||| | || || ||| |||| || | ||||| | |||||||| || || || ||||
Sbjct 330 GAGGCTGATCGGAA-CAAACCAAGAAAT-TACGAATGGGCACGATCCGCCCGTACCGATA 387
Query 424 AAGGAGTTAGTGCTGTTGGACAAGTAGTTTCAGGTCGCTTT-ATCGTTGATCCACTTGGA 482
||||||| ||||| || |||||||| ||||| ||||| ||| || |||||||| | ||||
Sbjct 388 AAGGAGTGAGTGCGGTGGGACAAGTGGTTTCTGGTCGTTTTTAT-GTTGATCCGCCTGGA 446
Query 483 TTCGTGAATCGTCTCAATTCAAATCTCCCTAATCAGATTAGAATCTTCGGTTACAAGCAT 542
|| ||| | || |||||||| || |||||| |||||||| | | || || ||||||| |
Sbjct 447 TTTGTGGAGCGGCTCAATTCGAAGCTCCCTGATCAGATTCGTGTGTTTGGGTACAAGCGT 506
Query 543 GTAACGCCGTCGTTTAGCTCCAAGAAGTTTTGCGATCGAAGAAGGTATGTGTATCTGCTT 602
|| | |||||||||||||||||||| || || ||||| || |||||||||||||| ||
Sbjct 507 GTTGCACCGTCGTTTAGCTCCAAGAAATTATGTGATCGGAGGAGGTATGTGTATCTAATT 566
Query 603 CCAGTGTTTGCTCTTG-ATCCA 623
|| || |||||| ||| |||||
Sbjct 567 CCGGTTTTTGCT-TTGGATCCA 587
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64296333560
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5