BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76130.1
Length=1491
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316534 jgi|Araly1|316534|fgenesh1_pm.C_scaffold_2001567 2056 0.0
> Ahg316534 jgi|Araly1|316534|fgenesh1_pm.C_scaffold_2001567
Length=1242
Score = 2056 bits (1113), Expect = 0.0
Identities = 1200/1243 (97%), Gaps = 2/1243 (0%)
Strand=Plus/Plus
Query 88 ATGGGCTACTATAACAATGTCTTTGATGAATGCAACGACCAAACTGATATCGGTCGGGTT 147
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGGCTACCATAACAATGTCTTTGATGAATGCAACGACCAAACTGATATCGGTCGAGTT 60
Query 148 ATACGCGATGGAAGGGAAGTCATTCTCCAAGCATATAATTGGGAATCTCATAAATATGAT 207
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 61 CTACGCGATGGAAGGGAAGTCATTCTCCAGGCATATAACTGGGAATCTCATAAATATGAT 120
Query 208 TGGTGGAGAAACTTGGATGGTAAAGTTCCTGACATCGCGAAATCCGGCTTTACTTCTGCA 267
||||||||||||||||| || |||||||| ||||| |||||||| |||||||||||||||
Sbjct 121 TGGTGGAGAAACTTGGACGGAAAAGTTCCCGACATTGCGAAATCTGGCTTTACTTCTGCA 180
Query 268 TGGTTGCCACCACCATCTCAGTCTCTTGCACCGGAAGGTTATCTTCCACAGGACCTTTAT 327
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 181 TGGTTGCCACCACCATCTCAGTCTCTTGCACCAGAAGGTTACCTTCCACAGGACCTTTAT 240
Query 328 TCACTAAACTCAGCATATGGCTCTGAGCATCTATTGAAATCCTTACTGCGCAAGATGAAA 387
|||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 241 TCACTAAACTCAGCATATGGCTCTGAGCATCTTTTGAAATCCTTACTTCGTAAGATGAAA 300
Query 388 CAATACAAAGTTAGAGCTATGGCTGATATAGTCATCAATCATCGTGTTGGGACAACTAGA 447
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 CAATACAAAGTTAGAGCTATGGCTGATATAGTCATCAATCATCGTGTTGGGACAACGAGA 360
Query 448 GGACATGGTGGAATGTATAACCGTTATGATGGAATTTCATTACCGTGGGATGAACACGCC 507
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 361 GGACATGGTGGAATGTATAACCGTTATGATGGGATTTCGTTACCGTGGGATGAACACGCT 420
Query 508 GTGACTTCTTGTACCGGAGGACTGGGTAACCGAAGCACAGGGGATAATTTCAATGGAGTT 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTGACTTCTTGTACCGGAGGACTGGGTAACCGAAGCACAGGGGATAATTTCAATGGAGTT 480
Query 568 CCAAATGTTGATCACACTCAGCATTTTGTTAGGAAAGATATAATTGGATGGCTTCGTTGG 627
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 481 CCAAATGTTGATCACACTCAGCATTTTGTTAGGAAAGATATAATCGGGTGGCTTCGTTGG 540
Query 628 TTACGCAACACCGTCGGGTTTCAAGATTTCCGTTTTGACTTTGCTAGGGGTTATTCAGCA 687
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTGCGCAACACCGTCGGGTTTCAAGATTTCCGTTTTGACTTTGCTAGGGGTTATTCAGCA 600
Query 688 AACTATGTGAAGGAATACATTGGCGCAGCGAAACCATTATTCTCGGTTGGAGAATGTTGG 747
||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 601 AACTATGTGAAGGAATACATTGGAGCAGCAAAACCGTTATTCTCGGTTGGAGAATGTTGG 660
Query 748 GATTCTTGCAATTACAATGGCCATGGTCTAGACTATAATCAAGATAGCCATAGACAGCGT 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GATTCTTGCAATTACAATGGCCATGGTCTAGACTATAATCAAGATAGCCATAGACAGCGT 720
Query 808 ATAATCAGTTGGATCGATGCGACGGGACAGATCTCTGCTGCATTTGACTTCACAACTAAA 867
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATAATCAGTTGGATCGATGCCACGGGACAGATCTCTGCTGCATTTGACTTCACAACTAAA 780
Query 868 GGAATTCTGCAGGAAGCCGTAAAGGGTCAGTATTGGCGTTTATGTGATGCCCAAGGGAAG 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GGAATTCTGCAGGAAGCCGTAAAGGGTCAGTATTGGCGTTTATGTGATGCCCAAGGGAAG 840
Query 928 CCACCGGGTGTAATGGGATGGTGGCCTTCAAGAGCTGTCACATTCCTTGATAACCATGAC 987
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 841 CCACCTGGTGTAATGGGATGGTGGCCTTCAAGAGCTGTCACGTTCCTTGATAACCATGAC 900
Query 988 ACTGGCTCTACTCAGGCTCATTGGCCGTTCCCTTCACACCACGTTATGGAGGGCTATGCA 1047
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 901 ACTGGCTCTACTCAGGCTCATTGGCCGTTCCCTTCACACCACATTATGGAGGGCTATGCA 960
Query 1048 TATATACTTACTCATCCCGGCATTCCCTGTGTGTTCTACGATCACTTTTACGATTGGGGA 1107
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 961 TATATACTTACTCATCCCGGCATTCCCTGTGTGTTCTACGATCATTTTTACGACTGGGGA 1020
Query 1108 AGCTCAATACATGATCAGATTGTCAAACTGATTGACATTAGGAGGCGACAAGATATCCAC 1167
||||| || ||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1021 AGCTCGATTCATGACCAGATTGTCAAACTGATTGAGATTAGGAGGCGACAAGATATCCAC 1080
Query 1168 AGTAGGTCAACTG-TCCGTGTTTTAAAAGCAGAATCTAACTTATATGCAGCCATTGTTGG 1226
||||||||||| | |||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1081 AGTAGGTCAAC-GATCCGCGTTTTAAAAGCAGAATCTAACTTATACGCAGCCATTGTTGG 1139
Query 1227 TGAGAAAATATGTATGAAGCTTGGAGACGGCTCTTGGTGCCCTTCTGGTAGAGACTGGAC 1286
||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TGAGAAACTGTGCATGAAGCTTGGAGACGGCTCTTGGTGCCCTTCTGGTAGAGACTGGAC 1199
Query 1287 TCTAGCAACAAGTGGCCATCGCTATGCCGTCTGGCACAAGTAA 1329
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TCTAGCAACAAGTGGCCATCGCTATGCCGTCTGGCACAAGTAA 1242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55802208925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5