BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76140.1
Length=2629
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476765 jgi|Araly1|476765|fgenesh2_kg.2__1895__AT1G76140.1 4126 0.0
Ahg472267 jgi|Araly1|472267|fgenesh2_kg.1__2221__AT1G20380.1 1681 0.0
Ahg949680 jgi|Araly1|949680|scaffold_801567.1 279 5e-74
> Ahg476765 jgi|Araly1|476765|fgenesh2_kg.2__1895__AT1G76140.1
Length=2548
Score = 4126 bits (2234), Expect = 0.0
Identities = 2419/2509 (96%), Gaps = 9/2509 (0%)
Strand=Plus/Plus
Query 51 AAAACCGATGCTCACAGCGTTTGCAAGTCACGCGCGTTCTCACGTTTTCGCGTTTGTTAC 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAACCGATGCTCACAGCGTTTGCAAGTCACGCGCGTTCTCACGTTTTCGCGTTTGTTAC 60
Query 111 CGTCCCAACAATCACGCGCCGCCTCCGTATAAATATC-TTACGCCAATCACCTCTCTCCT 169
||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||
Sbjct 61 CGTCCCAACAATCACGCGCCGCCTCCGTATAAATA-CATTACGCCAATCATCTCTCTCCT 119
Query 170 CTTCTCTTCTCCTAAACGAAACCTTCTCCAATCGACCCAATTCTGTTTCTCGTCGTTGTT 229
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 120 CTTTTCTTCTCCTAAACGAAACCTTCTCCAATCGACCCAATTCTGTTTCTCGTTGTTTTT 179
Query 230 ATTGTTCGAGCTCTGCGATAATGGGTTCTTCTTCGGTGTTTGGCGAGCAATTACAGTATC 289
|||||||||||||||||| ||||| |||||||||||||| ||||||| |||||| || |
Sbjct 180 GTTGTTCGAGCTCTGCGATTATGGGATCTTCTTCGGTGTTAGGCGAGCGATTACATTACC 239
Query 290 CTGCGACTCGGCGTGATGATTCCGTCGTCGATGACTATCACGGCGTCAAGATCGGAGATC 349
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CTGCGACTCGGCGTGGTGATTCCGTCGTCGATGACTATCACGGCGTCAAGATCGGAGATC 299
Query 350 CGTACCGTTGGTTAGAGGATCCTGATGCTGAAGAAGTGAAGGAGTTTGTGCAGAGCCAAG 409
||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||
Sbjct 300 CGTACCGTTGGTTAGAGGATCCTGATGCTGAAGAAGTAAAGGAGTTTGTGCTGAACCAAG 359
Query 410 TGAAATTGACAGATTCTGTACTTGAAAAGTGTGAAACAAAGGAGAAGCTCCGTCAGAATA 469
||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 360 TGAAATTGACAGATTCTGTGCTTGAAAAGTGCGAAACCAAGGAGAAGCTCCGTCAGAATA 419
Query 470 TAACGAAACTTATTGATCATCCTCGTTACGATTCACCATTCAGGCAAGGGGATAAGTACT 529
|||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||
Sbjct 420 TAACGAAACTTATTGATCATCCGCGTTACGATTCTCCGTTCAGGCAAGGGGATAAGTACT 479
Query 530 TTTACTTCCATAACACTGGTCTACAGGCTCAAAGTGTGCTTTATATGCAGGATAATCTGG 589
|||||||||||||||| ||||||||||| || ||||||||||||||||||||| ||||||
Sbjct 480 TTTACTTCCATAACACCGGTCTACAGGCCCAGAGTGTGCTTTATATGCAGGATGATCTGG 539
Query 590 ATGCTGAGCCAGAGGTTTTGCTTGATCCGAACACTCTTAGTGATGATGGAACAGTGGCCT 649
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 540 ATGCTGAGCCAGAGGTTTTGCTTGATCCGAACACTCTTAGTGATGATGGAACTGTGGCCT 599
Query 650 TAAACACCTTTTCTGTCAGCGAGGATGCTAAGTACTTGGCCTATGGTCTTAGTTCAAGTG 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TAAACACCTTTTCTGTCAGCGAGGATGCTAAGTACTTGGCCTATGGTCTTAGTTCAAGTG 659
Query 710 GTAGCGACTGGGTGACGATTAAGCTGATGAAAATCGAGGATAAGAAAGTGGAGCCTGATA 769
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 660 GTAGCGACTGGGTGACCATTAAGCTGATGAATATCGAGGATAAGAAAGTGGAGCCTGATG 719
Query 770 CTTTATCATGGGTTAAGTTTACCGGCATTACATGGACGCACGACAGTAAAGGATTTTTCT 829
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TTTTATCATGGGTTAAGTTTACCGGCATTACATGGACGCACGACAGTAAAGGATTTTTCT 779
Query 830 ATGGTCGCTACCCAGCTCCCAAAGAAGGAGAGGATATTGATGCTGGCACTGAGACTAATT 889
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 780 ATGGTCGCTACCCAGCTCCCAAAGAAGGAGAGGATATTGATGCTGGTACTGAGACTAATT 839
Query 890 CTAACCTTTATCATGAGCTGTATTACCATTTCATTGGGACGGATCAATCTCAAGATATCT 949
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 840 CTAACCTTTATCATGAGCTGTATTACCATTTCCTTGGGACGGATCAATCTCAAGATATCT 899
Query 950 TATGCTGGAGAGATAATGAGAATCCCAAATATATGTTCGGAGCTGAAGTCACTGACGATG 1009
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TATGCTGGAGAGATCATGAGAATCCCAAATATATGTTCGGAGCTGAAGTCACTGACGATG 959
Query 1010 GGAAGTATCTGATCATGAGCATTGGAGAGAGTTGTGACCCTGTCAACAAATTATACTACT 1069
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GGAAGTATCTGTTCATGAGCATTGGAGAGAGTTGTGACCCTGTCAACAAATTATACTACT 1019
Query 1070 GCGATATGACTTCATTGTCAGGAGGTCTTGAGAGTTTCAGAGGAAGCAGCAGTTTTCTTC 1129
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GCGATATGACTTCATTTTCTGGAGGTCTTGAGAGTTTCAGAGGAAGCAGCAGTTTTCTTC 1079
Query 1130 CATTCATTAAGCTTGTTGACACATTTGACGCGCAATATAGTGTTATCTCAAATGATGAGA 1189
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1080 CATTCATTAAGCTTGTTGACACGTTTGACGCTCAATATAGTGTTATCTCAAATGATGAGA 1139
Query 1190 CTCTGTTTACTTTCTTGACGAATAAAGATGCCCCTAAGTACAAATTAGTCCGGGTTGATC 1249
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 CTCTGTTTACTTTCTTGACAAATAAAGATGCCCCTAAGTACAAATTAGTCCGGGTTGATC 1199
Query 1250 TAAAGGAACCAAACAGCTGGACTGATGTTGTTGAAGAACACGAAAAGGATGTCTTAGCAT 1309
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1200 TAAAGGAACCAAACAGTTGGACTGATGTTGTTGAAGAACACGAGAAGGATGTCTTAGCAT 1259
Query 1310 CAGCTTGTGCTGTCAATGGGAATCACCTGGTCGCATGCTACATGAGCGATGTAAAGCATA 1369
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1260 CAGCTTGTGCAGTCAATGGGAATCATCTGGTCGCATGCTACATGAGCGATGTAAAGCATA 1319
Query 1370 TTCTGCAAATTAGGGACTTGAAATCTGGTTCATTGCTTCACCAATTACCTCTAGATATTG 1429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TTCTGCAAATTAGGGACTTGAAATCTGGTTCATTGCTTCACCAATTACCTCTAGATATTG 1379
Query 1430 GTTCAGTATCTGATGTTTCTGCTCGGCGCAAGGACAATACCTTTTTCTTTAGCTTTACTA 1489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 GTTCAGTATCTGATGTTTCTGCTCGGCGCAAGGACAATACCTTTTTCTTTAGCTTTACTA 1439
Query 1490 GCTTTCTCACTCCTGGTGTGATTTACAAGTGTGACTTAGCCAATGAATCTCCAGAAGTTA 1549
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 GCTTCCTCACTCCTGGTGTGATTTACAAGTGTGACTTAGCCAATGAATCTCCAGAAGTTA 1499
Query 1550 AGGTATTCCGGGAGGTTACTGTACCCGGATTTGACAGGGAAGCATTTCAAGCCATTCAGG 1609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 AGGTATTCCGGGAGGTTACTGTACCCGGATTTGACAGGGAAGCATTTCAAGCCATTCAGG 1559
Query 1610 TCTTCTATCCCAGCAAGGATGGAACAAAGATACCTATGTTTATTGTGGCGAAAAAGGATA 1669
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1560 TCTTCTATCCCAGCAAAGATGGAACAAAGATACCAATGTTTATTGTGGCGAAAAAGGATA 1619
Query 1670 TTAAGCTTGATGGATCACACCCATGTTTGCTCTATGCATATGGTGGGTTTAACATAAGCA 1729
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1620 TTAAGCTTGATGGATCACACCCATGTTTGCTCTATGCATATGGCGGGTTTAACATAAGCA 1679
Query 1730 TAACACCGTCTTTCAGTGCCAGCCGTATTGTGCTTAGCAAGCATCTCGGTGTTGTTTTCT 1789
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1680 TAACACCGTCTTTCAGTGCCAGCCGCATTGTGCTTAGCAAGCATCTCGGTGTTGTTTTCT 1739
Query 1790 GCTTTGCAAACATTCGGGGTGGTGGGGAGTATGGTGAGGAATGGCACAAAGCAGGTTCAC 1849
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 GCTTTGCAAATATTCGGGGTGGTGGGGAGTATGGTGAGGAATGGCACAAAGCAGGTTCAC 1799
Query 1850 TTGCCAAAAAGCAGAACTGTTTCGATGACTTTATCTCTGGGGCAGAGTATCTCGTGTCCG 1909
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1800 TTGCCAAAAAGCAGAACTGTTTCGATGACTTTATTTCTGGGGCAGAGTATCTCGTGTCCG 1859
Query 1910 CTGGTTATACACAACCGAGCAAGCTGTGTATTGAAGGTGGCAGCAATGGTGGACTCCTTG 1969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1860 CTGGTTATACACAACCGAGCAAGCTGTGTATTGAAGGTGGCAGCAATGGTGGACTCCTAA 1919
Query 1970 TCGGTGCTTGCATAAATCAGAGACCGGACCTTTATGGTTGTGCTTTGGCTCATGTGGGCG 2029
|||||||||||||||||||| | | | |||||| ||| |||||||| |||||||||||||
Sbjct 1920 TCGGTGCTTGCATAAATCAG-G-CAG-ACCTTTTTGGGTGTGCTTTAGCTCATGTGGGCG 1976
Query 2030 TCATGGACATGCTACGGTTTCACAAATTCACTATAGGTCATGCCTGGACATCTGATTATG 2089
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1977 TCATGGACATGCTACGGTTTCACAAGTTCACTATAGGTCATGCCTGGACATCAGATTATG 2036
Query 2090 GTTGCTCTGAGAATGAAGAGGAGTTTCATTGGCTGATAAAGTACTCGCCTCTGCACAATG 2149
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2037 GTTGCTCCGAGAATGAAGAGGAGTTTCATTGGCTGATAAAGTACTCGCCTCTGCACAATG 2096
Query 2150 TGAAGAGGCCATGGGAGCAACAAACCGATCACTT-AGTTCAGTATCCATCAACTATGCTA 2208
||||||||||||||||||||||||||||| | || | |||||||||||||||| ||||||
Sbjct 2097 TGAAGAGGCCATGGGAGCAACAAACCGATAAATTCA-TTCAGTATCCATCAACCATGCTA 2155
Query 2209 CTGACTGCTGATCACGATGACAGAGTTGTGCCACTTCACTCTTTGAAGTTGCTTGCTACG 2268
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2156 TTGACTGCTGATCACGATGACAGAGTTGTGCCACTTCACTCTTTGAAGTTGCTTGCGACG 2215
Query 2269 TTGCAGCACGTGCTGTGCACAAGCTTAGACAATAGTCCTCAGATGAACCCCATAATTGGT 2328
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 2216 TTGCAGCACGTGCTGTGCACAAGCTTAGAGAATAGTCCTCAGACGAACCCCATAATTGGT 2275
Query 2329 CGTATTGAAGTCAAGGCTGGCCATGGTGCTGGTCGCCCAACCCAAAAGATGATTGATGAA 2388
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2276 CGTATTGAAGTAAAGGCTGGCCATGGTGCCGGTCGCCCAACCCAAAAGATGATTGATGAA 2335
Query 2389 GCGGCTGATCGGTATTCGTTCATGGCAAAGATGGTGAATGCTTCATGGACGGAGTaaaaa 2448
|| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 2336 GCCGCTGATCGGTATTCGTTCATGGCAAAGATGGTGAATGCTGCATGGGCGGAGTAAAAC 2395
Query 2449 aaaTTCCTTTATCTACAGGCACCAAATATCTTTTCTCAATATCTTCTGTCCAAACAAGGA 2508
|| |||||||| |||||||||||||||||||||||||||| | ||||||||||| ||| |
Sbjct 2396 AA-TTCCTTTAGCTACAGGCACCAAATATCTTTTCTCAAT-TGTTCTGTCCAAAAAAGAA 2453
Query 2509 CGTTGTATGAGTTAGTGACAATTACATGTAAACACATGTTTCAGTTTTT 2557
| |||||||||||||||||| |||||| |||||||| | ||||||||||
Sbjct 2454 CCTTGTATGAGTTAGTGACAGTTACATATAAACACAGGCTTCAGTTTTT 2502
> Ahg472267 jgi|Araly1|472267|fgenesh2_kg.1__2221__AT1G20380.1
Length=2268
Score = 1681 bits (910), Expect = 0.0
Identities = 1805/2231 (81%), Gaps = 86/2231 (4%)
Strand=Plus/Plus
Query 250 ATGGGTTCTTCT-TCGGTGTTTGGCGAGCAATTACAGTATCCTGCGACTCGGCGTGATGA 308
||||| || ||| |||| ||||| |||| || |||||||| || | |||| |||||
Sbjct 1 ATGGGATC-TCTCTCGGCGTTTGAAGAGCGGTTGCAGTATCCAACGGCGAGGCGGGATGA 59
Query 309 TTCCGTCGTCGATGACTATCACGGCGTCAA-GATCGGAGATCCGTACCGTTGGTTAGAGG 367
|||||||| || || ||||||||||| || | || ||||| ||||| ||||| || |
Sbjct 60 GTCCGTCGTTGAAGATTATCACGGCGTTAACG-TCTCCGATCCTTACCGCTGGTTGGAAG 118
Query 368 ATCCTGATGCTGAAGAAGTGAAGGAGTTTGT-GCAGAGCCAAGTGAAATTGACAGATTCT 426
||||||| |||||||||||||| || ||||| | ||| |||||||||||| |||| ||
Sbjct 119 ATCCTGACGCTGAAGAAGTGAAAGAATTTGTAG-AGAAACAAGTGAAATTGTCAGAATCA 177
Query 427 GTACTTGAAAA-GTGTGAAAC-AAAGGAGAAGC-TC-CGTCAGAATATAACGA-AACTTA 481
|| | | |||| || ||||| ||| || |||| || | || ||| | || | | |||
Sbjct 178 GTGC-TCAAAACTTGCGAAACGAAA-GAAAAGCTTCATGACA-AAT-TCAC-AGAGTTTA 232
Query 482 TTGATCATCCTCGTTACGATTCACCATTCAGGCAAGGGGATAAGTACTTTTACTTCCATA 541
| ||| |||||||||||||| | || || | || |||| | || | ||||||||||||||
Sbjct 233 TCGATTATCCTCGTTACGATACGCCCTTTAAGCGAGGGAACAACTTCTTTTACTTCCATA 292
Query 542 ACACTGGTCTACAGGCTCAAAGTGTGCTTTATATGCAGGATAATCTGGATG-CTG-AGCC 599
|| | ||||| || ||||| ||||||||| || | |||||| || |||| | ||| || |
Sbjct 293 ACTCAGGTCTTCAAGCTCAGAGTGTGCTTCATGTTCAGGATGATTTGGA-GTCTGAAG-C 350
Query 600 AGAGGTTTTGCTTGATCCGAACACTCTTAGTGATGATGGAACAGTGGCCTTAAACACCTT 659
|||||| ||||||||||| || |||||||||||||||||||| || | ||||||| |||
Sbjct 351 AGAGGTCTTGCTTGATCCTAATACTCTTAGTGATGATGGAACCGTTTCTTTAAACA-CTT 409
Query 660 T-TCTGTCAGCGAGGATGCTAAGTACTTGGCCTATGGTCTTAGTTCAAGTGGTAGCGACT 718
| ||| | || |||||||||||||| ||||| ||||| ||||| || |||||||| || |
Sbjct 410 TATCTATTAGTGAGGATGCTAAGTATTTGGCTTATGGGCTTAGCTCCAGTGGTAGTGATT 469
Query 719 GGGTGACGATT-AAGCTGATGAAAATCGAGGATAAGAAAGTGGAGCCTGATACTTTATCA 777
|||| || ||| ||| ||||||| || || ||||||||||||||| ||||| |||||||
Sbjct 470 GGGTTACAATTAAAG-TGATGAAGATTGAAGATAAGAAAGTGGAGTCTGATTCTTTATCT 528
Query 778 TGGGTTAAGTTTACCGGCATTACATGGACGCACGACAGTAAAGGATTTTTCTATGGTCGC 837
||||||||||||| || ||||||||||| || ||| | ||||| |||||||| |||||
Sbjct 529 TGGGTTAAGTTTAGTGGAATTACATGGACACATGACGGGAAAGGTTTTTTCTACAGTCGC 588
Query 838 TACCCAGCTCCCA-AAGAAGGAGAGGATATTGATGCTGGCACTGAGACTAATTCTAACCT 896
|| |||||| ||| | || |||||| | || |||||||| || |||||||||||||||||
Sbjct 589 TATCCAGCT-CCACAGGAGGGAGAGAAGATAGATGCTGGTACAGAGACTAATTCTAACCT 647
Query 897 TTATCATGAGCTGTATTACCA-TTTCATTGGGACGGATCAATCTC-AAGATATCTTATGC 954
||| |||||| | || ||||| |||| | |||||||||||||| | ||||| | || ||
Sbjct 648 TTACCATGAGTTATACTACCATTTTC-TAGGGACGGATCAATC-CGAAGATGTTTTGTGT 705
Query 955 TGGAGAGA-TAATGAGAATCCCAAATATATGTTCGGAGCTGAAGTCACTGACGATGGGAA 1013
|||||||| || || ||||||||| ||||||| ||| || |||||||||| ||||||||
Sbjct 706 TGGAGAGACCAA-GATAATCCCAAACATATGTTTGGATCTAAAGTCACTGATGATGGGAA 764
Query 1014 GTATC-TGATCATGAGC-ATTGGAG-AGAGTTGTGACCCTGTCAACAA--ATTATACTAC 1068
||| | | |||||| | |||| || || ||||||||||||| ||||| |||| | |
Sbjct 765 GTA-CTTAATCATG-TCAATTGAAGAAG-GTTGTGACCCTGTAAACAAGGTTTAT-C-AT 819
Query 1069 TGCGATATGACTTCA-TTGTC-AGGAGGTCTTG-AGAGTTTCAGAGGAAGCAGCAG-TTT 1124
|| ||| | | ||| || | | |||||| | || |||| |||||||||| | | | |
Sbjct 820 TGTGATCTCTCATCACTT-CCTA-AAGGTCTAGAAG-GTTTTAGAGGAAGCAAC-GCTCT 875
Query 1125 TCTTCCATTCATTAAGCTTGTTGACACATTTGACGCGCAATATAGTGTTATCTCAAATGA 1184
|||||||| |||||||| | |||||||||||||| ||||| | || |||| |||| ||
Sbjct 876 ACTTCCATTTGTTAAGCTTATCGACACATTTGACGCACAATACATTGCTATCGCAAACGA 935
Query 1185 TGAGAC-TCTGTTTACTTTCTTGACGAATAAAGATGCCCCTAAGTACAAATTAGTCCGGG 1243
|| ||| | ||||||||||||| || || ||||||||||| |||||||||||||| ||||
Sbjct 936 TGCGACAT-TGTTTACTTTCTTAACCAACAAAGATGCCCCAAAGTACAAATTAGTTCGGG 994
Query 1244 TTGATCTAAAGGAACCAAACAGCTGGACTGATGTTGTTGA-AGAACACGAAAAGGATG-T 1301
||||||| |||||||| | ||| |||||||||||| | | ||||| |||||||||| |
Sbjct 995 TTGATCTGAAGGAACCGAGCAGTTGGACTGATGTT-ATCACTGAACATGAAAAGGATGTT 1053
Query 1302 CTTAGCATCAGCTTGTGCTGTCAATGGGA-ATCACCTGGTCGCAT-GCTACATGAGCGAT 1359
| | || |||||| ||| || ||| ||| |||| ||||| | | |||||||||| |||
Sbjct 1054 C-TCTCAACAGCTTCTGCAGTTAAT-GGAGATCAACTGGTTG-TTAGCTACATGAGTGAT 1110
Query 1360 GTAAAGCATATTCTGCAAATTAGGGACTTGAAATCTGGTTCATTGCTTCACCA-ATTACC 1418
||||| || || ||||| ||||| ||||||||||||||||| |||||||| | ||||||
Sbjct 1111 GTAAAACACATCCTGCAGATTAGAGACTTGAAATCTGGTTCCTTGCTTCA-TAGATTACC 1169
Query 1419 TCTAGATATTGGTTCAGTATCTGATGTTTCTGCTCGGCGCAAGGACAATACCTTTTTCTT 1478
| |||||||||| || |||| || ||||| ||||||||| || |||| |||||||||||
Sbjct 1170 TGTAGATATTGGCTCGGTATGTGGTGTTTTTGCTCGGCGTAAAGACACCACCTTTTTCTT 1229
Query 1479 TAGCTTTACTAGCTTT-CTCACTCCTGGTGTGATTTACAAGTGTGACTTAGCCAATGAAT 1537
||| ||||| || ||| || || ||||| ||||||||||| ||||||||| || |||||
Sbjct 1230 TAGGTTTACAAG-TTTCCTTACACCTGGCGTGATTTACAAATGTGACTTATCCCATGAAG 1288
Query 1538 CTCCAGAAGTTAAGGTATTCCGGGAGGTTACTGTACCCGGATTTGACAGGGAA--GCATT 1595
|||||||||||| |||||| || || | |||||| ||||| || | ||| |||||
Sbjct 1289 CTCCAGAAGTTACGGTATTTCGTGAAATCGGTGTACCTGGATTAGATA--GAACTGCATT 1346
Query 1596 TCAAGCCATTCAGGTCTTCTATCCCAGCAAGGATGGAACAAAGATACCTATGTTTATTGT 1655
||||| || ||||||||| ||||| || ||||| |||||| ||||||| |||||||| ||
Sbjct 1347 TCAAGTCACTCAGGTCTTTTATCCGAGTAAGGACGGAACAGAGATACCAATGTTTATAGT 1406
Query 1656 GGCGA-AAAAGGATATTAAGCTTGATGGATCACACCCATGTTTGCTCTATGCATATGGTG 1714
||| | |||| ||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1407 GGCTAGAAAA-GATATAAAGCTAGATGGATCACACCCATGTTTGCTCTATGCATATGGAG 1465
Query 1715 GGTTTAACATAAGCATAACACCGTCTTTCAGTGCCAGCCGTATTGTGCTTAGCAAGCATC 1774
|||||| | ||||||| || |||| |||||| || | ||||||||||||||| | |||||
Sbjct 1466 GGTTTAGCGTAAGCATGACGCCGTTTTTCAGCGCGACCCGTATTGTGCTTAGTAGGCATC 1525
Query 1775 TCGGTGTTGTTTTCTGCTTTGCAAACATTCGGGGTGGTGGGGAGTATGGTGAGGAATGGC 1834
| ||| || ||||| ||||||||||| || |||||||| |||||||||||||||||||
Sbjct 1526 TTGGTACCGTGTTCTGTTTTGCAAACATCCGTGGTGGTGGTGAGTATGGTGAGGAATGGC 1585
Query 1835 ACAAAGCAGGTTCACTTGCCAAAAAGCAGAACTGTTTCGATGACTTT-ATCTCTGGGGCA 1893
| ||| | || | |||||||| |||||||| || |||||||| ||| || ||||||||
Sbjct 1586 ATAAATCTGGCGCTCTTGCCAATAAGCAGAATTGCTTCGATGA-TTTCATATCTGGGGCT 1644
Query 1894 GAGTATCTCGTGTCCGCTGGTTATACACAACCGAGCAAGCTGTGTATTGAAGGTGGCAGC 1953
|||||||| || || ||||||||||| |||||||| || || ||||| |||||||| ||
Sbjct 1645 GAGTATCTGGTTTCTGCTGGTTATACCCAACCGAGAAAACTTTGTATCGAAGGTGGTAGT 1704
Query 1954 AATGGTGG-ACTCCTTGTCGGTGCTTGCATAAATCAGAGACCGGACCT-TTATGGTTGTG 2011
|| ||||| | || | || || |||||||| |||||||||||||| || || ||||||||
Sbjct 1705 AACGGTGGTATTC-TAGTAGGGGCTTGCATTAATCAGAGACCGGATCTCTT-TGGTTGTG 1762
Query 2012 CTTTGGCTCATGT-GGGCGTCATGGACATGCTACGGTTTCACAAATTCACTATAGGTCAT 2070
|| | |||||||| ||| |||||||||||||| ||||||||||| || || ||||| |||
Sbjct 1763 CTCTCGCTCATGTTGGG-GTCATGGACATGCTCCGGTTTCACAAGTTTACCATAGGACAT 1821
Query 2071 GCCTGGACATCTGA-TTATGGTTGCTCTGAGAATGAAGAGGAGTTTCATTGGCTGATAAA 2129
|| ||||| ||||| || |||||| ||||| || ||||||||||| ||||||||||||||
Sbjct 1822 GCTTGGACTTCTGAATT-TGGTTGTTCTGACAAGGAAGAGGAGTTCCATTGGCTGATAAA 1880
Query 2130 GTACTCGCCTCTGCACAATGTGAAGAGGCCATGGGAGCAACAA-ACCGATCACTTAGTTC 2188
||| ||||||||||| |||||||||||||||||||| || || || |||| || ||||
Sbjct 1881 GTATTCGCCTCTGCATAATGTGAAGAGGCCATGGGAACAG-AAGACAGATCGGTTTGTTC 1939
Query 2189 AGTATCCATCAACTATGCTACTGACTGCTGATCACGATGACAGAGTTGTGCCACTTCACT 2248
|||| |||||||| ||| | | |||||||||||||| || ||||| || |||||||| |
Sbjct 1940 AGTACCCATCAACCATGTTGTTAACTGCTGATCACGACGATAGAGTCGTCCCACTTCA-T 1998
Query 2249 -CTTTGAAGTTGCTTGCTACGTTGCAGCACGTGCT-GTGCACAAGCTTAGACAATAGTCC 2306
||| ||||||||||| || |||| | | | | | || ||||| ||||||||
Sbjct 1999 ACTTACAAGTTGCTTGCGACAATGCAATATGAATTAG-GTTTGAGTTTAGAGAATAGTCC 2057
Query 2307 TCAGATGAACCCCATAATTGGTCGTATTGAAGTCAAGGCTGGCCATGGTGCTGGTCGCCC 2366
|||| |||||| ||||||| ||| || ||||| || || || ||||| || || || ||
Sbjct 2058 ACAGACGAACCCTATAATTGCTCGGATAGAAGTAAAAGCCGGGCATGGAGCAGGACGTCC 2117
Query 2367 AACCCAAAAGATGATTGATGAAGCGGCTGATCGGTATTCGTTCATGGCAAAGATGGTGAA 2426
||| |||||||||||||| |||||||||||||| |||||||||||||| ||||||||| |
Sbjct 2118 AACGCAAAAGATGATTGACGAAGCGGCTGATCGATATTCGTTCATGGCGAAGATGGTGGA 2177
Query 2427 TGCTTCATGGA 2437
|||||||||||
Sbjct 2178 TGCTTCATGGA 2188
> Ahg949680 jgi|Araly1|949680|scaffold_801567.1
Length=374
Score = 279 bits (151), Expect = 5e-74
Identities = 178/190 (94%), Gaps = 5/190 (3%)
Strand=Plus/Plus
Query 1680 TGGATCACACCCATGTTTGCTCTATGCATATGGTGGGTTTAACATAAGCATAACACCGTC 1739
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 95 TGGATCACA-CCATGTTTGCTCTATGCATATGGT-GGTTTAACATAAGCATAACACCGTC 152
Query 1740 TTTCAGTGCCAGCCGTATTGTGCTTAGCAAGCATCTCGGTGTTGTTTTCTGCTTTGCAAA 1799
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 153 TTTCAGTGGAAGCCACATTGTGCTTAGCAAGCATCTCGGTGTTGTTTTCTGCTTTGCAAA 212
Query 1800 CATTCGGGG-TGGTGGGGAGTATGGTGAGGAATGGCACAAAGCAGGTTCACTTGCCAAAA 1858
||||||||| |||||| |||||||| | |||||||||||||||||||||||||||||||
Sbjct 213 CATTCGGGGGTGGTGG--AGTATGGTTACGAATGGCACAAAGCAGGTTCACTTGCCAAAA 270
Query 1859 AGCAGAACTG 1868
|||||||||
Sbjct 271 TGCAGAACTG 280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99148907735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5