BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G76150.1 Length=1489 Score E Sequences producing significant alignments: (Bits) Value Ahg927006 jgi|Araly1|927006|scaffold_202567.1 1664 0.0 Ahg476765 jgi|Araly1|476765|fgenesh2_kg.2__1895__AT1G76140.1 246 3e-64 > Ahg927006 jgi|Araly1|927006|scaffold_202567.1 Length=984 Score = 1664 bits (901), Expect = 0.0 Identities = 954/980 (97%), Gaps = 2/980 (0%) Strand=Plus/Plus Query 30 GGACACGGAAGCTGAGCTCTAATCCTGATCGGAGATGGCGACTAGCGATTCTGAATTCAA 89 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GGACACGGAAGCTGAGCTTTAATCCTGATCGGAGATGGCGACTAGCGATTCTGAATTCAA 60 Query 90 TTCTGATCTTCTTCTCGCTCACAAGCTTCCCGAGACGCGTTACACCTACAATGAAAGAGA 149 ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 61 TTCTGATCTTCTTCTCGCTCACAAGCTTCCCGAGACGCGATACACCTACAACGAAAGAGA 120 Query 150 TGTAGCAATCTATGCTTTGGGAATCGGCGCTTGTGGCCAAGATGCTGTGGATTCCGATGA 209 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 121 TGTAGCAATCTATGCTTTGGGAATCGGCGCTTGTGGCCAAGATGCTGTTGATTCCGATGA 180 Query 210 GCTCAAGTTTGTGTATCACAGAAATGGGCAGGATTTGATCCAGGTCTTACCAACTTTTGC 269 |||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||| Sbjct 181 GCTCAAGTTTGTGTATCACAGAAACGGCCAGGATTTGATCCAGGCCTTACCAACTTTTGC 240 Query 270 TTCACTATTCACACTTGGATCTTTGACAGAAGGACTGGATTTGCCAGGTTTTAAATATGA 329 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 241 TTCACTATTCACACTTGGATCTTTGACAGAAGGTCTGGATTTGCCAGGTTTTAAATATGA 300 Query 330 TCCTAGTCTCTTGTTGCATGGGCAGCAGTATATTGAAATATACAGGCCATTACCTTCCAA 389 ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 301 TCCTAGTCTCTTGTTGCATGGACAGCAGTACATTGAAATATACAGGCCATTACCTTCCAA 360 Query 390 GGCTTCCTTAATTAACAAAGTAAGCCTCGCTGGTTTGCAAGATAAAGGTAAAGCAGCTAT 449 |||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 361 GGCTTCTTTAGTTAACAAAGTAAGCCTCGCTGGATTGCAAGATAAAGGTAAAGCAGCTAT 420 Query 450 CCTTGAATTAGAAACCAGAAGTTACGAGGAAGGGTCAGGGGAACTGTTATGCATGAATAG 509 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 CCTTGAATTAGAAACCAGAAGTTACGAGGAAGGGTCAGGGGAACTGTTATGCATGAATAG 480 Query 510 GACGACTGT-TTTCCTAAGAGGTGCTGGTGGTTTCTCAAATTCATCTCAACCATTCTCTT 568 ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 481 GACGACTGTATTT-CTAAGAGGTGCTGGTGGTTTCTCAAATTCATCTCAACCATTTTCTT 539 Query 569 ACAAAAACTATCCAAGTAACCAGGGCTTAGCTGTGAAAATCCCACAAAGACAACCTTTGA 628 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 ACAAAAACTATCCAAGTAACCAGGGCTTAGCTGTGAAAATCCCACAAAGACAACCTTTGA 599 Query 629 CAGTGTGCGAAGAGCGCACTCAGCCATCGCAGGCATTACTTTATAGGCTGTCTGGTGACT 688 ||||||| ||||||||||| || ||||| |||||||| |||||||||||||||||||||| Sbjct 600 CAGTGTGGGAAGAGCGCACCCAACCATCCCAGGCATTGCTTTATAGGCTGTCTGGTGACT 659 Query 689 ATAATCCTCTGCATTCAGATCCAGAATTTGCAAAACTTGCCGGATTCCCACGCCCGATAT 748 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 ATAACCCTCTGCATTCAGATCCAGAATTTGCAAAACTTGCCGGATTCCCACGCCCGATAT 719 Query 749 TGCATGGGCTATGCACACTCGGGTTTGCAATCAAGGCAATCATCAAGTGTGTTTGCAAGG 808 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 TGCATGGGCTATGCACACTCGGGTTTGCAATCAAGGCAATCATCAAGTGTGTTTGCAAGG 779 Query 809 GTGACCCAACTGCTGTCAAAACCATATCTGGACGATTCCTCACGACTGTTTTTCCTGGCG 868 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 GTGACCCAACTGCTGTCAAAACCATATCTGGACGATTCCTCACGACTGTTTTTCCTGGCG 839 Query 869 AAACTCTGATAACCGAAATGTGGCTTGAAGGCTTGAGGGTTATATATCAGACGAAAGTGA 928 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 AAACTCTAATAACCGAAATGTGGCTTGAAGGCTTGAGGGTTATATATCAGACGAAAGTGA 899 Query 929 AGGAAAGGAACAAAACTGTGTTAGCTGGTTATGTTGATATTCGTGGGTTATCTTCGTCAC 988 |||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||| Sbjct 900 AGGAAAGGAACAAAACCGTGTTAGCTGGTTATGTTGATATTCGCGGTTTATCTTCGTCAC 959 Query 989 TTTAGAATGTTAGGTCCTTA 1008 |||||||||||||||||||| Sbjct 960 TTTAGAATGTTAGGTCCTTA 979 > Ahg476765 jgi|Araly1|476765|fgenesh2_kg.2__1895__AT1G76140.1 Length=2548 Score = 246 bits (133), Expect = 3e-64 Identities = 164/179 (92%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 1265 AAAAACTGAAACATGTGTTTACATGTAATTGTCACTAACTCATACAACGTCCTTGTTTGG 1324 |||||||||| | |||||||| |||||| |||||||||||||||||| || ||| ||||| Sbjct 2502 AAAAACTGAAGCCTGTGTTTATATGTAACTGTCACTAACTCATACAAGGTTCTTTTTTGG 2443 Query 1325 ACAGAAGATATTGAGAAAAGATATTTGGTGCCTGTAGATAAAGGAAttttttttACTCCG 1384 |||||| | |||||||||||||||||||||||||||| |||||||||| |||| |||||| Sbjct 2442 ACAGAACA-ATTGAGAAAAGATATTTGGTGCCTGTAGCTAAAGGAATTGTTTT-ACTCCG 2385 Query 1385 TCCATGAAGCATTCACCATCTTTGCCATGAACGAATACCGATCAGCCGCTTCATCAATC 1443 ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 2384 CCCATGCAGCATTCACCATCTTTGCCATGAACGAATACCGATCAGCGGCTTCATCAATC 2326 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55726028435 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5