BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76150.1
Length=1489
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927006 jgi|Araly1|927006|scaffold_202567.1 1664 0.0
Ahg476765 jgi|Araly1|476765|fgenesh2_kg.2__1895__AT1G76140.1 246 3e-64
> Ahg927006 jgi|Araly1|927006|scaffold_202567.1
Length=984
Score = 1664 bits (901), Expect = 0.0
Identities = 954/980 (97%), Gaps = 2/980 (0%)
Strand=Plus/Plus
Query 30 GGACACGGAAGCTGAGCTCTAATCCTGATCGGAGATGGCGACTAGCGATTCTGAATTCAA 89
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGACACGGAAGCTGAGCTTTAATCCTGATCGGAGATGGCGACTAGCGATTCTGAATTCAA 60
Query 90 TTCTGATCTTCTTCTCGCTCACAAGCTTCCCGAGACGCGTTACACCTACAATGAAAGAGA 149
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 61 TTCTGATCTTCTTCTCGCTCACAAGCTTCCCGAGACGCGATACACCTACAACGAAAGAGA 120
Query 150 TGTAGCAATCTATGCTTTGGGAATCGGCGCTTGTGGCCAAGATGCTGTGGATTCCGATGA 209
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 TGTAGCAATCTATGCTTTGGGAATCGGCGCTTGTGGCCAAGATGCTGTTGATTCCGATGA 180
Query 210 GCTCAAGTTTGTGTATCACAGAAATGGGCAGGATTTGATCCAGGTCTTACCAACTTTTGC 269
|||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||
Sbjct 181 GCTCAAGTTTGTGTATCACAGAAACGGCCAGGATTTGATCCAGGCCTTACCAACTTTTGC 240
Query 270 TTCACTATTCACACTTGGATCTTTGACAGAAGGACTGGATTTGCCAGGTTTTAAATATGA 329
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 241 TTCACTATTCACACTTGGATCTTTGACAGAAGGTCTGGATTTGCCAGGTTTTAAATATGA 300
Query 330 TCCTAGTCTCTTGTTGCATGGGCAGCAGTATATTGAAATATACAGGCCATTACCTTCCAA 389
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 301 TCCTAGTCTCTTGTTGCATGGACAGCAGTACATTGAAATATACAGGCCATTACCTTCCAA 360
Query 390 GGCTTCCTTAATTAACAAAGTAAGCCTCGCTGGTTTGCAAGATAAAGGTAAAGCAGCTAT 449
|||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 361 GGCTTCTTTAGTTAACAAAGTAAGCCTCGCTGGATTGCAAGATAAAGGTAAAGCAGCTAT 420
Query 450 CCTTGAATTAGAAACCAGAAGTTACGAGGAAGGGTCAGGGGAACTGTTATGCATGAATAG 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CCTTGAATTAGAAACCAGAAGTTACGAGGAAGGGTCAGGGGAACTGTTATGCATGAATAG 480
Query 510 GACGACTGT-TTTCCTAAGAGGTGCTGGTGGTTTCTCAAATTCATCTCAACCATTCTCTT 568
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 481 GACGACTGTATTT-CTAAGAGGTGCTGGTGGTTTCTCAAATTCATCTCAACCATTTTCTT 539
Query 569 ACAAAAACTATCCAAGTAACCAGGGCTTAGCTGTGAAAATCCCACAAAGACAACCTTTGA 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ACAAAAACTATCCAAGTAACCAGGGCTTAGCTGTGAAAATCCCACAAAGACAACCTTTGA 599
Query 629 CAGTGTGCGAAGAGCGCACTCAGCCATCGCAGGCATTACTTTATAGGCTGTCTGGTGACT 688
||||||| ||||||||||| || ||||| |||||||| ||||||||||||||||||||||
Sbjct 600 CAGTGTGGGAAGAGCGCACCCAACCATCCCAGGCATTGCTTTATAGGCTGTCTGGTGACT 659
Query 689 ATAATCCTCTGCATTCAGATCCAGAATTTGCAAAACTTGCCGGATTCCCACGCCCGATAT 748
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ATAACCCTCTGCATTCAGATCCAGAATTTGCAAAACTTGCCGGATTCCCACGCCCGATAT 719
Query 749 TGCATGGGCTATGCACACTCGGGTTTGCAATCAAGGCAATCATCAAGTGTGTTTGCAAGG 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGCATGGGCTATGCACACTCGGGTTTGCAATCAAGGCAATCATCAAGTGTGTTTGCAAGG 779
Query 809 GTGACCCAACTGCTGTCAAAACCATATCTGGACGATTCCTCACGACTGTTTTTCCTGGCG 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GTGACCCAACTGCTGTCAAAACCATATCTGGACGATTCCTCACGACTGTTTTTCCTGGCG 839
Query 869 AAACTCTGATAACCGAAATGTGGCTTGAAGGCTTGAGGGTTATATATCAGACGAAAGTGA 928
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AAACTCTAATAACCGAAATGTGGCTTGAAGGCTTGAGGGTTATATATCAGACGAAAGTGA 899
Query 929 AGGAAAGGAACAAAACTGTGTTAGCTGGTTATGTTGATATTCGTGGGTTATCTTCGTCAC 988
|||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||
Sbjct 900 AGGAAAGGAACAAAACCGTGTTAGCTGGTTATGTTGATATTCGCGGTTTATCTTCGTCAC 959
Query 989 TTTAGAATGTTAGGTCCTTA 1008
||||||||||||||||||||
Sbjct 960 TTTAGAATGTTAGGTCCTTA 979
> Ahg476765 jgi|Araly1|476765|fgenesh2_kg.2__1895__AT1G76140.1
Length=2548
Score = 246 bits (133), Expect = 3e-64
Identities = 164/179 (92%), Gaps = 2/179 (1%)
Strand=Plus/Minus
Query 1265 AAAAACTGAAACATGTGTTTACATGTAATTGTCACTAACTCATACAACGTCCTTGTTTGG 1324
|||||||||| | |||||||| |||||| |||||||||||||||||| || ||| |||||
Sbjct 2502 AAAAACTGAAGCCTGTGTTTATATGTAACTGTCACTAACTCATACAAGGTTCTTTTTTGG 2443
Query 1325 ACAGAAGATATTGAGAAAAGATATTTGGTGCCTGTAGATAAAGGAAttttttttACTCCG 1384
|||||| | |||||||||||||||||||||||||||| |||||||||| |||| ||||||
Sbjct 2442 ACAGAACA-ATTGAGAAAAGATATTTGGTGCCTGTAGCTAAAGGAATTGTTTT-ACTCCG 2385
Query 1385 TCCATGAAGCATTCACCATCTTTGCCATGAACGAATACCGATCAGCCGCTTCATCAATC 1443
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2384 CCCATGCAGCATTCACCATCTTTGCCATGAACGAATACCGATCAGCGGCTTCATCAATC 2326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55726028435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5