BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76160.1
Length=2008
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927007 jgi|Araly1|927007|scaffold_202568.1 2483 0.0
Ahg313077 jgi|Araly1|313077|fgenesh1_pm.C_scaffold_1001857 1022 0.0
> Ahg927007 jgi|Araly1|927007|scaffold_202568.1
Length=1667
Score = 2483 bits (1344), Expect = 0.0
Identities = 1561/1668 (94%), Gaps = 5/1668 (0%)
Strand=Plus/Plus
Query 94 ACCGGTTTTCATA-CACAAAAATGGCGGGCAGTGCCTCATTCGCCGCCGCATTATTCATC 152
||||||||||||| || ||||||||||| || |||||||||||||||||||||| |||||
Sbjct 1 ACCGGTTTTCATACCAAAAAAATGGCGGCCAATGCCTCATTCGCCGCCGCATTACTCATC 60
Query 153 GGACTCTCTCTTCTCTTCGCCGTCACGGCTGAAGATCCGTACAGATTCTTTGAATGGAAC 212
|||||||| ||||||||||||||| ||| |||||||||||||||||||| |||||||||
Sbjct 61 GGACTCTCGCTTCTCTTCGCCGTCGTGGCGGAAGATCCGTACAGATTCTTCGAATGGAAC 120
Query 213 ATAACTTACGGCGATATATACCCACTCGGTGTTCGCCAACAGGGTATTTTGATCAACGGG 272
|| |||||||||||||| |||||||| || ||||||||||||||||||||||||||| ||
Sbjct 121 ATCACTTACGGCGATATCTACCCACTTGGAGTTCGCCAACAGGGTATTTTGATCAAC-GG 179
Query 273 GC-GTTTCCGGGACCGGACATTCATTCGGTTACTAATGACAATCTCATCATCAACGTCTA 331
|| ||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 180 GCAGTTTCCGGGACCGGACATTCACTCAGTTACTAATGATAATCTCATCATCAACGTCTA 239
Query 332 CAATAGCCTCGACGAACCTTTCCTTCTTTCATGGAATGGAATTCAACAGAGGAGGAACTC 391
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 240 CAATAGCCTCGACGAACCTTTCCTCCTTTCATGGAATGGAATTCAGCAGAGGAGGAACTC 299
Query 392 TTTCGTTGATGGAGTGTATGGAACGACATGCCCAATCCCGCCGGGGAAGAACTACACTTA 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTTCGTTGATGGAGTGTATGGAACGACATGCCCAATCCCGCCGGGGAAGAACTACACTTA 359
Query 452 CATTCTTCAGATGAAGGATCAGATCGGAAGTTTTTACTACTTCCCTTCTCTCGGCTTTC- 510
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 360 TATTCTTCAGATGAAGGATCAGATCGGAAGTTTCTACTACTTCCCGTCTCTCGG-TTTCC 418
Query 511 ACAAAGCCGCCGGTGGATTTGGTGGCATTCGTATCCTCAGTCGTCCTAGAATCCCGGTCC 570
||||||||||||||||||||||||| || |||||||| ||||| || |||||||| ||||
Sbjct 419 ACAAAGCCGCCGGTGGATTTGGTGGTATCCGTATCCTTAGTCGCCCGAGAATCCCTGTCC 478
Query 571 CTTTCCCTGATCCCGCCGGAGATACCACTGTCCTTATCGGAGACTGGTACAAAGCAAACC 630
|||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||
Sbjct 479 CTTTCCCTGATCCCGCCGGAGATACCACCGTCCTTATCGGCGACTGGTACAAATCAAACC 538
Query 631 ACACGGATTTGAGAGCACAGCTTGATAATGGTAAGAAGCTTCCTTTACCAGACGGCATCC 690
||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 539 ACACGGATTTGAGGGCACAGCTTGATAATGGTAAGAAGCTTCCTTTACCAGATGGTATCC 598
Query 691 TCATCAATGGTCGTTCAAGTGGTGCAACTCTTAATGTTGAACAAGGTAAGACATACAGGT 750
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 599 TCATCAATGGTCGTTCAAGTGGTGCCACTCTCAATGTTGAACAAGGTAAGACATACAGGT 658
Query 751 TTAGAATATCCAATGTAGGGTTACAAGACTCTCTCAACTTCCGCATTCAAGACCATAAGA 810
| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TGAGAATATCAAATGTTGGGTTACAAGACTCTCTCAACTTCCGCATTCAAGACCATAAGA 718
Query 811 TGAAAGTGGTGGAAGTCGAAGGAACACACACTCTTCAGACTACTTTCTCTTCACTAGATG 870
|||||||| | ||||||||||| ||||| || |||||||||||||||||||| |||||||
Sbjct 719 TGAAAGTGATCGAAGTCGAAGGGACACATACCCTTCAGACTACTTTCTCTTCGCTAGATG 778
Query 871 TTCATGTTGGACAATCTTACTCAGTCCTTGTAACCGCGGACCAGACTCCACGGGATTATT 930
|||||||||| ||||||||||| ||||||||||| ||||| || |||||||| |||||||
Sbjct 779 TTCATGTTGGCCAATCTTACTCGGTCCTTGTAACTGCGGATCAAACTCCACGAGATTATT 838
Query 931 ACGTGGTCGTCTCTTCTCGGTTTACCTCAAATGTCCTTACTACCACGGGTATTTTCCGAT 990
|||||||||||||||||||||||||||| ||| |||| || |||||||||||| |||| |
Sbjct 839 ACGTGGTCGTCTCTTCTCGGTTTACCTCTAATATCCTCACCACCACGGGTATTCTCCGTT 898
Query 991 ACAGTAATTCTGCTGGTGGTGTTTCTGGACCTATTCCTGGTGGACCTACCATTCAAATCG 1050
||||||| |||||||||| |||||||||||||||||| |||||||| ||||||||||| |
Sbjct 899 ACAGTAACTCTGCTGGTGCTGTTTCTGGACCTATTCCCGGTGGACCAACCATTCAAATTG 958
Query 1051 ACTGGTCCTTGAACCAGGCTCGAGCCATCAGGACTAACCTTTCAGCGAGCGGACCAAGGC 1110
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 959 ACTGGTCCTTGAACCAGGCTCGAGCCATCAGGACTAACCTTACAGCGAGCGGACCAAGAC 1018
Query 1111 CAAATCCACAAGGATCGTACCACTACGGTATGATAAACACTACAAGAACGATCAGACTTG 1170
| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1019 CGAATCCACAAGGATCATACCACTACGGTATGATAAACACTACAAGAACAATCAGACTTG 1078
Query 1171 CTAGCTCTGCTGGTCAGGTTGATGGGAAGCAACGATACGCTGTGAACAGTGTCTCATTCA 1230
||||||||||||||||||| || ||||||||||||||||| ||||||||||| |||||||
Sbjct 1079 CTAGCTCTGCTGGTCAGGTCGACGGGAAGCAACGATACGCCGTGAACAGTGTATCATTCA 1138
Query 1231 AACCCGCAGACACTCCTCTGAAAATCGCGGACTACTTCAAGATTGACGGTGTTTACAGAA 1290
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 AACCAGCAGACACTCCTCTAAAAATCGCGGACTACTTCAAGATTGACGGTGTTTACAGAA 1198
Query 1291 GTGGAAGCATACAGTACCAACCCACTGGTGGAGGAATATACCTCGACACATCTGTTATGC 1350
||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GTGGAAGTATCCAATACCAACCCACTGGTGGAGGAATATACCTCGACACATCTGTTATGC 1258
Query 1351 AAGTTGATTACAGAACCTTTGTGGAGATTATTTTCGAAAATTCTGAGGATATTGTCCAGA 1410
||||||||||||||||||||||||||||| ||||||| || ||||| |||||||||||||
Sbjct 1259 AAGTTGATTACAGAACCTTTGTGGAGATTGTTTTCGAGAACTCTGAAGATATTGTCCAGA 1318
Query 1411 GCTGGCATCTTGATGGTTACTCTTTCTGGGTTGTTGGAATGGATGGTGGACAGTGGAGTC 1470
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1319 GCTGGCATCTTGATGGTTACTCTTTCTGGGTTGTTGGAATGGACGGTGGGCAGTGGAGTC 1378
Query 1471 CAGATAGTAGGAACGAGTATAACCTACGCGATGCAGTCGCTCGCTGCACCGTTCAGGTAT 1530
||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||
Sbjct 1379 CAGCCAGTAGGAACGAGTACAATCTACGCGATGCAGTCGCTCGCTGCACCGTGCAGGTAT 1438
Query 1531 ACCCAAGCTCATGGACGGCTATATTGATAGCACTCGACAACGTAGGAATGTGGAATCTAA 1590
| || ||||||||||| |||||||| |||||||| |||||||||||||||||||| ||||
Sbjct 1439 ATCCGAGCTCATGGACAGCTATATTAATAGCACTTGACAACGTAGGAATGTGGAACCTAA 1498
Query 1591 GATCCGAGTTCTGGGCGAGGCAATACTTAGGACAACAATTGTATTTACGTGTGTACACAC 1650
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1499 GATCCGAGTTCTGGGCGAGGCAATACTTAGGACAACAGTTGTATTTACGTGTCTACACAC 1558
Query 1651 CCTCAACTTCTCTCAGAGATGAATATCCAATCCCCAAGAACGCTCTTCTCTGCGGGAGAG 1710
|| | | |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1559 CCACGAGTTCTCTCAGAGATGAATATCCAATCCCCAAGAACGCTCTTCTCTGCGGTAGAG 1618
Query 1711 CCAGTGGTCGCAGCACCAGACCGCTTTGAGCTGGTGGTTAGATATAGA 1758
||||||||||| |||||||||||||||||||| | ||||||||| |||
Sbjct 1619 CCAGTGGTCGCCGCACCAGACCGCTTTGAGCTTGCGGTTAGATAGAGA 1666
> Ahg313077 jgi|Araly1|313077|fgenesh1_pm.C_scaffold_1001857
Length=1632
Score = 1022 bits (553), Expect = 0.0
Identities = 1243/1573 (79%), Gaps = 59/1573 (4%)
Strand=Plus/Plus
Query 173 CGTCACGGCTGAAGATCCGTACAGATTCTTTGAATGGAACATAACTTACGGCGATATATA 232
|||| | || ||||||||||| |||||||| |||||| || |||| |||||| | ||||
Sbjct 63 CGTCGCTGCGGAAGATCCGTATAGATTCTTCGAATGGCACGTAACATACGGCAACATAT- 121
Query 233 C-CCACTCGGTGTTCGC-CAACAGGGTATTTTGATCAACGGGGCGTTTCCGGGACCGGAC 290
| || ||| ||| || ||||||||||| |||||||| ||| ||| || ||||||||
Sbjct 122 CTCCTCTCAACGTT-GCACAACAGGGTATATTGATCAATGGGAAGTTCCCAGGACCGGAT 180
Query 291 ATTCAT-TCGGTTACTAATGACAATCTCATCATCAACGTCTACAA-TAGCCTCGACGAAC 348
| || | || ||||| ||||| ||||||||||| ||||| | || | |||||||||
Sbjct 181 A-TCGTCTCTGTTACCAATGATAATCTCATCATTAACGTATTTAACCA-TCTCGACGAAT 238
Query 349 CTTTCCTTCTTTCATGGAATGGAATTC-AACAGAGGAGGAACTCTTTCGTTGATGGAGTG 407
|||||||| | ||||||| || |||| || | ||||||| || | | || ||||||
Sbjct 239 CTTTCCTTATATCATGGAGCGGGATTCGAA-ATTGGAGGAATTCATACCAGGACGGAGTG 297
Query 408 TATGGAACGACATGCCCAATCCCGCCGGGGAAGAACTACACTTACATTCTTCAGATGAAG 467
|| |||||||| ||||||||||||||||| || |||||||| ||| |||||||| | ||
Sbjct 298 TACGGAACGACGTGCCCAATCCCGCCGGGAAAAAACTACACCTACGTTCTTCAGGTTAAA 357
Query 468 GATCAGATCGGAAGTTTTTACTACTTCCCTTCTCTCGGCTTTCACAAAGCCGCCGGTGGA 527
|||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 358 GATCAGATTGGAAGTTTCTACTACTTCCCCTCTCTCGGCTTTCACAAAGCCGCCGGTGGA 417
Query 528 TTTGGTGGC-ATTCGTATCCTC-AGTCGTCCTAGAATCCCGGTCCCTTTCCCTGATCCCG 585
||||| | | ||||||||| || || || || | |||||| || || ||||| | |||||
Sbjct 418 TTTGGAG-CTATTCGTATC-TCCAGCCGCCCCAAAATCCCCGTTCCATTCCCAGCTCCCG 475
Query 586 CCGGA-GAT-ACCACTGTCCTTATCGGAGACTGGTACAAAGCAAACCACACGGATTTGAG 643
| | | ||| || || || || ||||| |||||||||||| | ||||||| ||| |||||
Sbjct 476 CTG-ATGATTAC-ACCGTTCTCATCGGTGACTGGTACAAAACCAACCACAAGGACTTGAG 533
Query 644 AGCACAGCTTGATAATGGTAAGAA-GCTTCCTTTACCAGACGGCATCCTCATCAATGGTC 702
|||||| || ||||||||| ||| ||||||||||||||| || || |||||||||||||
Sbjct 534 AGCACAACTCGATAATGGTG-GAAAGCTTCCTTTACCAGATGGAATTCTCATCAATGGTC 592
Query 703 GTTCAAGTGGTGCAACTCTTAATGTTGAACAAGGTAAGACATACAGGTTTAGAATATCCA 762
| ||||| || || || || |||||| ||||||||| || || | || ||||| |
Sbjct 593 GCGGTAGTGGCGCCACCCTCAACATTGAACCAGGTAAGACTTATAGACTGAGGATATCAA 652
Query 763 ATGTAGGGTTACAAGACTCTCTCAACTTCCGCATTCAAGACCATAAGATGAAAGTG-GTG 821
|||| || || ||| ||||||||||||||| || ||| |||| | |||||| || ||
Sbjct 653 ATGTTGGATTGCAAAACTCTCTCAACTTCCAAATCCAAAACCACATGATGAA-GTTAGTT 711
Query 822 GAAGTCGAAGGAACACACACTCTTCAGACTACTTTCTCTTCACTAGATGTTCATGTTGGA 881
|| |||||||| ||||||||| |||||||| | |||||| | || ||||| || || ||
Sbjct 712 GAGGTCGAAGGGACACACACTATTCAGACTCCATTCTCTACGCTTGATGTCCACGTCGGT 771
Query 882 CAATCTTACTCAGTCCTTGTAACCGCGGACCAGACTCCACGGGATTATTACGTGGTCGTC 941
||||||||||| |||||| |||| || |||||| || || |||||||| | || |||
Sbjct 772 CAATCTTACTCGGTCCTTATAACAGCTGACCAGCCTGCAAAAGATTATTATATTGTGGTC 831
Query 942 TCTTCTCGGTTTACCTCAAATG-TCCTTA-CTACCACGGGTATT-TTCCGAT-ACAGTAA 997
||| | |||||||||| || | |||||| | ||||| ||| || ||| || |||||||
Sbjct 832 TCTAGTAGGTTTACCTCCAA-GATCCTTATC-ACCACCGGTGTTCTTC--ATTACAGTAA 887
Query 998 TTCTGCTGGTGGTGTTTCTGGACCTATTCCTGGTGGACCTACCATTCAAAT-CGACTGGT 1056
||||||||| |||||||||||||||||| | |||||| || | || | | | ||||
Sbjct 888 TTCTGCTGGACCTGTTTCTGGACCTATTCCAGATGGACCAAC--T-CAGTTGCCA-TGGT 943
Query 1057 CCTT-GAACCAGGCTCGAGCCATCAGGACTAACCTTTCAGCGAGCGGACCAAGGCCAAAT 1115
| || || ||| || |||||||||| ||| |||||| ||||||| ||||||||||||||
Sbjct 944 CTTTTGA-CCAAGCACGAGCCATCAAGACCAACCTTACAGCGAGTGGACCAAGGCCAAAC 1002
Query 1116 CCACAAGGATCGTACCACTACGGTATGATAAACA-CTACAAGAACGATCAGACTTGCTAG 1174
|| ||||| || |||||||| || | |||||| | | || |||| |||||||||||||
Sbjct 1003 CCTCAAGGTTCATACCACTATGGCAAGATAAATATC-ACTCGAACAATCAGACTTGCTAA 1061
Query 1175 CTCTGCTGGTCAGGTTGATGGGAAGCAACGATACGCTGTGAACAGTGTC-TCATTCAAAC 1233
||||||||| | | | || |||||||||||||| ||||| |||| | ||||| | |
Sbjct 1062 CTCTGCTGGAAATATCAAAGGCAAGCAACGATACGCAGTGAATAGTG-CATCATTTTA-C 1119
Query 1234 CC-GCAGACACTCCTCTGAAAATCGCGGACTACTTCAAGATTGACGGTGTTTACAGAAG- 1291
|| |||||||| ||| ||||| | |||||||||||||| |||| |||||| |||| |
Sbjct 1120 CCAGCAGACACCCCTTTGAAACTAGCGGACTACTTCAAAATTGCCGGTGTATACA-ATCC 1178
Query 1292 TGGAAGCATACA-GTACCAACCCAC-TGGTGGAGGAATATACC-TCGACACATCTGTTAT 1348
||||||||||| | | || |||| | ||||| ||||| || | | ||||| || ||
Sbjct 1179 TGGAAGCATACCTG-ATCAGTCCACATA-TGGAGCAATATTCCCT-GTTACATCAGTAAT 1235
Query 1349 GCAAGTTGATTACAGAACCTTTGTGGAGATTATTTTCGAAAATTCTGAGGATATTGTCCA 1408
|||| |||||||| ||| |||||||||||| ||||||| || | || |||||||||||
Sbjct 1236 GCAAACTGATTACAAAACTTTTGTGGAGATTGTTTTCGAGAACTGGGAAGATATTGTCCA 1295
Query 1409 GAGCTGGCATCTTGATGGTTACTCTTTCTGGGTTGTTGGAATGGATGGTGG-ACAGTGGA 1467
|| |||||| ||||| ||||||||||||| || ||||||||||| ||| | ||||||
Sbjct 1296 GACCTGGCACCTTGACGGTTACTCTTTCTACGTGGTTGGAATGGAACTTGGGA-AGTGGA 1354
Query 1468 GTCCAGATAGTAGGAACGAGTATAACCTACGCGATGCAGTCGCTCGCTGCACCGTTCAGG 1527
|| | | ||||| || | || || ||| ||| |||||| | || ||||| |||||||
Sbjct 1355 GTGCTGCCAGTAGAAAAGTCTACAATCTAAACGACGCAGTCTCACGGTGCACTGTTCAGG 1414
Query 1528 TATA-CCCAAGCTCATGGACGGCTATATT-GATAGCACTCGACAACGTAGGAATGTGGAA 1585
| || ||||| |||||||| || |||| | || |||| ||||| ||||||||||||||
Sbjct 1415 TGTATCCCAAA-TCATGGACTGCCATATACG-TATCACTGGACAATGTAGGAATGTGGAA 1472
Query 1586 TCTAAGATCCGAGTTCTGGGCGAGGCAATACTTAGGACAACAATTGTATTTACGTGTGTA 1645
|||||||| ||||| |||| || |||||| | |||||||| || || | ||||| ||
Sbjct 1473 CCTAAGATCAGAGTTATGGGAAAGACAATACCTGGGACAACAGTTCTACATGCGTGTTTA 1532
Query 1646 CACACCCTCAACTTCTCTCAGAGATGAATA-TCCAATCCCCAAGAACGCTCTTCTCTGCG 1704
|||| |||| ||||| |||||||||||||| | | |||| |||||||||||||||||||
Sbjct 1533 CACAACCTCCACTTCCCTCAGAGATGAATACTTGA-TCCCGAAGAACGCTCTTCTCTGCG 1591
Query 1705 GGAGAGCCAGTGG 1717
| || |||| |||
Sbjct 1592 GCAGGGCCACTGG 1604
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75494865590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5