BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76170.1
Length=1139
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476769 jgi|Araly1|476769|fgenesh2_kg.2__1899__AT1G76170.1 1629 0.0
Ahg483552 jgi|Araly1|483552|fgenesh2_kg.4__2612__AT2G44270.1 1229 0.0
> Ahg476769 jgi|Araly1|476769|fgenesh2_kg.2__1899__AT1G76170.1
Length=1071
Score = 1629 bits (882), Expect = 0.0
Identities = 1012/1075 (94%), Gaps = 7/1075 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGCAGGGGAAGAGAAGAGCAAGAAAGCAGGAGGAGAGTGTTTCTATGAGGTTTTT 60
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGCAGGCGAAGGGAAGAGCAAGAAAGCAGGAGGAGAGTGTTTCTATGAGGTTTTT 60
Query 61 GAGGAAGAGATTCACCAAGTCATTGTTGGGAATCGTTTGTTTAAGTTCGGTGAACGAGTT 120
||||||||||||||||| |||||||||||||||||||| ||||||| |||||| ||||||
Sbjct 61 GAGGAAGAGATTCACCATGTCATTGTTGGGAATCGTTTATTTAAGTCCGGTGAGCGAGTT 120
Query 121 GCTATAGGTGCCTCCGGTGGAAAAGATTCTTCAGTGCTGGCATATGTGTTATCAGAACTA 180
||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 121 GCTATAGGTGCTTCCGGTGGAAAAGATTCGACAGTGCTGGCATATGTATTATCAGAACTA 180
Query 181 AACAGACGTCACAGTTACGGACTCGATCTTTTTCTTTTGTCTATTGATGAAGGGATAACG 240
|| |||||||||| |||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 181 AATAGACGTCACAATTACGGGCTGGATCTTTTTCTTTTGTCTATTGATGAAGGGATAACG 240
Query 241 GGTTATCGTGATGATTCTCTCGAGACTGTTAAAAGGAACGAAGTTCAATATGGATTGCCT 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 241 GGTTATCGTGATGATTCTCTCGAGACTGTTAAAAGGAACGAGGTTCAATATGGGTTGCCT 300
Query 301 CTTCAGATTGTTTCATACAAAGATCTGTATGGATGGACAATGGACGAGATTGTGAAGATG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTTCAGATTGTTTCATACAAAGATCTGTATGGATGGACAATGGACGAGATTGTGAAGATG 360
Query 361 ATCGGTTTGAAGAACAATTGCACCTTCTGTGGTGTATTCCGTCGACAGGCACTTGATCGA 420
|||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||
Sbjct 361 ATCGGTTTGAAGAACAATTGCACCTTTTGTGGTGTATTTCGTAGACAGGCACTTGATCGA 420
Query 421 GGAGCTGCGTTATTGAAAGTAGATAAGCTAGTCACTGGACATAATGCAGATGATATAGCC 480
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGAGCTGCATTATTGAAAGTAGATAAGCTAGTCACTGGACATAATGCAGATGATATAGCG 480
Query 481 GAAACAGTTGTCTTAAACATACTGCGAGGCGATATTGCTAGATTGAGTAGGTGCACATCA 540
||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 481 GAAACAGTTCTCTTAAACATACTGCGAGGGGATATCGCTAGATTGAGTAGGTGCACATCA 540
Query 541 ATCACTACAGGCGAAGATGGTCCAATTCCAAGATGTAAACCTTTCAAATATACATACGAG 600
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 541 ATCACTACTGGCGAAGATGGTCCAATTCCAAGATGTAAACCTTTCAAATATACATATGAG 600
Query 601 AAGGAGATTGTCATGTATGCTTATTTCAAGAAGCTGGACTACTTCTCCACTGAATGCATA 660
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 601 AAGGAGATTGTCATGTATGCTTATTTCAAGAAGCTGGACTACTTCTCCACCGAATGCATA 660
Query 661 TACTCCCCTAATGCTTATCGTGGATTCGC-CTGTGAGTTCATCAATGACTTGGAAAGACT 719
||||| ||||||||||||||||| || || | ||||||||||||| || |||||| ||||
Sbjct 661 TACTCTCCTAATGCTTATCGTGGGTTTGCTC-GTGAGTTCATCAAAGATTTGGAACGACT 719
Query 720 AAGGCCAAGGGCTATTCTGGATATCATCAAGTCAGGTGAAGACTTCAGAATTGCCACAAC 779
|||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 720 AAGGCCAAGGGCTATTCTGGATATCATCAAATCTGGTGAAGACTTCAGAATTGCGACAAC 779
Query 780 CACGAAAATGCCTGAGCAAGGGACTTGTGAGCGATGTGGGTATATTTCTAGCCAGAAATG 839
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 780 CACGAAAATGCCTGAGCAAGGGACGTGTGAGCGATGTGGGTATATTTCTAGCCAGAAATG 839
Query 840 GTGCAAAGCTTGTGTTTTGTTGGAAGGATTGAACCGTGGTCTGCCTAAGATGGGCATTGG 899
|||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||
Sbjct 840 GTGCAAAGCTTGTGTTTTGTTGGAGGGATTGAACCGTGGTTTACCTAAGATGGGCATTGG 899
Query 900 AAGACCAAGAGGAAACGTAAATGGTGATTATAAGGACATAAAGGCTAGATCTACTGCAAA 959
||||||| |||||| || ||||| || | ||||||| ||||||||| |||||||||||
Sbjct 900 AAGACCACGAGGAAGCGGAAATG---ATCAGAAGGACACAAAGGCTAGGTCTACTGCAAA 956
Query 960 AACTATAGAGAGCAAACAATGTGGATCTCTGGATTTCTAAATTAAGAGAAAAA--CCAAA 1017
| ||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||
Sbjct 957 ATCTATAGAGAGCAAACAATGTGGATCTCTGGATTTCTAAACTAAAAGAAAAAAACCAAA 1016
Query 1018 GCTATGAGACTGCAATGGATGCTGTGATAGTTGCCAAACTGTTTTTGTATAGAAA 1072
|||||||||||||||||||| ||||| | ||||||||||| || ||||||||||
Sbjct 1017 ACTATGAGACTGCAATGGATGATGTGACAATTGCCAAACTGGTTCTGTATAGAAA 1071
> Ahg483552 jgi|Araly1|483552|fgenesh2_kg.4__2612__AT2G44270.1
Length=1165
Score = 1229 bits (665), Expect = 0.0
Identities = 879/983 (89%), Gaps = 12/983 (1%)
Strand=Plus/Plus
Query 38 GAGAGTGTTTCTATGAGGTTTTTGAGGAAGAGATTCACCAAGTCATTGTTGGGAATCGTT 97
||||||| |||||||||||||||||||| |||||||| |||||||||||| ||||||||
Sbjct 126 GAGAGTGCTTCTATGAGGTTTTTGAGGAGGAGATTCATCAAGTCATTGTTCAGAATCGTT 185
Query 98 TGTTTAAGTTCGGTGAACGAGTTGCTATAGGTGCCTCCGGTGGAAAAGATTCTTCAGTGC 157
| || || | ||||||||| ||||||||||||||||| ||||||||||||||| | || |
Sbjct 186 TATTCAAATCCGGTGAACGTGTTGCTATAGGTGCCTCTGGTGGAAAAGATTCTACCGTTC 245
Query 158 TGGCATATGTGTTATCAGAACTAAACAGACGTCACAGTTACGGACTCGATCTTTTTCTTT 217
||||||||||||||||||||||||||||||| |||| |||||| || || || ||||| |
Sbjct 246 TGGCATATGTGTTATCAGAACTAAACAGACGCCACAATTACGGGCTAGACCTCTTTCTCT 305
Query 218 TGTCTATTGATGAAGGGATAACGGGTTATCGTGATGATTCTCTCGAGACTGTTAAAAGGA 277
|||| || ||||||||||| ||||||||||||||||||||||| |||||||| ||| |||
Sbjct 306 TGTCCATAGATGAAGGGATTACGGGTTATCGTGATGATTCTCTTGAGACTGTGAAACGGA 365
Query 278 ACGAAGTTCAATATGGATTGCCTCTTCAGATTGTTTCATACAAAGATCTGTATGGATGGA 337
||||||| |||||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 366 ACGAAGTCCAATATGGTTTGCCTCTCCAAATTGTTTCATACAAAGATCTGTATGGATGGA 425
Query 338 CAATGGACGAGATTGTGAAGATGATCGGTTTGAAGAACAATTGCACCTTCTGTGGTGTAT 397
||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||
Sbjct 426 CAATGGACGAGATTGTGAAAATGATTGGTTTGAAGAACAATTGCACCTTTTGTGGTGTAT 485
Query 398 TCCGTCGACAGGCACTTGATCGAGGAGCTGCGTTATTGAAAGTAGATAAGCTAGTCACTG 457
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 486 TCCGTCGACAGGCACTTGATCGAGGAGCTGCCTTATTGAAAGTAGATAAGCTAGTCACTG 545
Query 458 GACATAATGCAGATGATATAGCCGAAACAGTTGTCTTAAACATACTGCGAGGCGATATTG 517
|||||||||| ||||||||||| ||||| ||| |||| |||||| ||||||| |||||||
Sbjct 546 GACATAATGCTGATGATATAGCAGAAACCGTTCTCTTGAACATATTGCGAGGGGATATTG 605
Query 518 CTAGATTGAGTAGGTGCACATCAATCACTACAGGCGAAGATGGTCCAATTCCAAGATGTA 577
||||||| ||| |||||||||| || ||||| || ||||||||||| |||||||||||||
Sbjct 606 CTAGATTAAGTCGGTGCACATCGATTACTACTGGTGAAGATGGTCCCATTCCAAGATGTA 665
Query 578 AACCTTTCAAATATACATACGAGAAGGAGATTGTCATGTATGCTTATTTCAAGAAGCTGG 637
|||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 666 AACCTTTCAAGTATACGTACGAAAAGGAGATTGTCATGTATGCTTATTTCAAGAAGCTCG 725
Query 638 ACTACTTCTCCACTGAATGCATATACTCCCCTAATGCTTATCGTGGATTCGCCTGTGAGT 697
| ||||||||||| |||||||||||||| |||||||| |||||||| || ||| ||||||
Sbjct 726 ATTACTTCTCCACCGAATGCATATACTCTCCTAATGCATATCGTGGGTTTGCCCGTGAGT 785
Query 698 TCATCAATGACTTGGAAAGACTAAGGCCAAGGGCTATTCTGGATATCATCAAGTCAGGTG 757
||||||| || ||||||||| ||||||||||||| |||||||| ||||| || || ||||
Sbjct 786 TCATCAAAGATTTGGAAAGAATAAGGCCAAGGGCGATTCTGGACATCATAAAATCTGGTG 845
Query 758 AAGACTTCAGAATTGCCACAACCACGAAA-ATGCCTGAGCAAGGGACTTGTGAGCGATGT 816
|||| || |||||||| |||||||| ||| ||||||||||||||||| |||||||||||
Sbjct 846 AAGATTTTAGAATTGCGACAACCAC-AAAGATGCCTGAGCAAGGGACGTGTGAGCGATGC 904
Query 817 GGGTATATTTCTAGCCAGAAATGGTGCAAAGCTTGTGTTTTGTTGGAAGGATTGAACCGT 876
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 905 GGGTATATTTCTAGCCAGAAATGGTGCAAAGCTTGTGTTTTGTTGGAAGGACTGAACCGT 964
Query 877 GGTCTGCCTAAGATGGGCATTGGAAGACCAAGAGGAAACGTAAATGGTGATTATAA---G 933
||| ||||||||||||| ||||||||||| |||| | ||||| | || |||| |
Sbjct 965 GGTTTGCCTAAGATGGGTATTGGAAGACCGCGAGG---CTTAAATAGCGACCATAACAAG 1021
Query 934 GACATAAAG--GC-TAGATCTACTGCAAAAACTATAGAGAGCAAACAATGTGGATCTCTG 990
|| | |||| || | ||| | ||||||| |||||||||||||||||||||||||||||
Sbjct 1022 GAAACAAAGAAGCCTGGATATGTTGCAAAATCTATAGAGAGCAAACAATGTGGATCTCTG 1081
Query 991 GATTTCTAAA-TTAAGAGAAAAA 1012
|||||||||| || ||||||||
Sbjct 1082 GATTTCTAAAATTTTGAGAAAAA 1104
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42468929538
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5