BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G76180.1

Length=1018
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg927009 jgi|Araly1|927009|scaffold_202570.1                        514    5e-145


> Ahg927009 jgi|Araly1|927009|scaffold_202570.1
Length=554

 Score =  514 bits (278),  Expect = 5e-145
 Identities = 362/401 (90%), Gaps = 12/401 (3%)
 Strand=Plus/Plus

Query  207  TTTTTCCGATAACTATGGCTGAGGAAATCAAGAATGTTCCTGAACAGGAGGTGCCAAAGG  266
            |||||| |||||||||||| |||||||||||||| |||||||| ||| ||||||||||||
Sbjct  7    TTTTTCTGATAACTATGGCGGAGGAAATCAAGAACGTTCCTGAGCAGAAGGTGCCAAAGG  66

Query  267  TAGCAACAGAGG-A--ATCATCGGCAGAGGTTACAGATCGTGGATTGTTCGATTTCTTGG  323
            |||| ||||||| |  ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  67   TAGCGACAGAGGAATCATCATCGGCTGAGGTTACAGATCGTGGATTGTTCGATTTCTTGG  126

Query  324  GAAAGAAGAAAGACGAAACAAAACCAGAGGAGACTCCGATCGCTTCAGAGTTTGAGCAGA  383
            |||||||||| | |||||||||||| ||||| ||  |||||| |||||||||||||||||
Sbjct  127  GAAAGAAGAAGGGCGAAACAAAACCCGAGGAAACGACGATCGATTCAGAGTTTGAGCAGA  186

Query  384  AGGTTCATATTTCAGAGCCGGAGCC------AGAGGTTAAACACGAAAGTCTTCTTGAAA  437
            ||||||||||||| |||||||||||      ||||||||||||||||||||| ||||| |
Sbjct  187  AGGTTCATATTTCGGAGCCGGAGCCGGCGCCAGAGGTTAAACACGAAAGTCTCCTTGAGA  246

Query  438  AGCTTCACCGAAGCGACAGTTCTTCTAGCTCCTCaagtgaggaagaaggttcagatggtg  497
            |||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||
Sbjct  247  AGCTTCACCGAAGCGACAGTTCTTCTAGCTCCTCTAGTGAGGAAGAAGGTGAAGATGGTG  306

Query  498  agaagaggaagaagaagaaggagaagaagaagccaactactgaagttgaggt-aaag--g  554
            |||||||||||||||| ||||||||||||||||||  | ||||||| ||||| |||   |
Sbjct  307  AGAAGAGGAAGAAGAAAAAGGAGAAGAAGAAGCCAGTTGCTGAAGTAGAGGTGAAAACAG  366

Query  555  aggaagagaagaaaggGTTTATGGAGAAGTTGAAAGAGAAG  595
            |||||||||||||||||||||||||||||||||| ||||||
Sbjct  367  AGGAAGAGAAGAAAGGGTTTATGGAGAAGTTGAAGGAGAAG  407


 Score =  189 bits (102),  Expect = 3e-47
 Identities = 124/135 (92%), Gaps = 0/135 (0%)
 Strand=Plus/Plus

Query  665  GTGGAAGAAGCGCATCCAGTGGAGAAGAAAGGGATTCTTGAGAAGATTAAGGAGAAGCTT  724
            ||||| ||||||||||| | ||| ||||||||||||||||||||||||||||||||||||
Sbjct  420  GTGGAGGAAGCGCATCCGGCGGAAAAGAAAGGGATTCTTGAGAAGATTAAGGAGAAGCTT  479

Query  725  CCAGGATACCACCCTAAGACCACCGTAGAGGAGGAGAAGAAAGATAAAGAATAAGAAGAT  784
            |||||||||||||| |||||||||||||||||||||||||| || |||||||||||| | 
Sbjct  480  CCAGGATACCACCCCAAGACCACCGTAGAGGAGGAGAAGAAGGACAAAGAATAAGAAAAA  539

Query  785  TATCATTAAAGATAT  799
            ||| |||||| ||||
Sbjct  540  TATGATTAAAAATAT  554



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37856056581


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5