BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76185.1
Length=854
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927010 jgi|Araly1|927010|scaffold_202571.1 488 3e-137
Ahg921010 jgi|Araly1|921010|scaffold_102291.1 320 1e-86
> Ahg927010 jgi|Araly1|927010|scaffold_202571.1
Length=364
Score = 488 bits (264), Expect = 3e-137
Identities = 329/361 (91%), Gaps = 2/361 (1%)
Strand=Plus/Plus
Query 151 GGGACTTGGTGGAGAAGAAGCGATGATAACAAGATCGAATCTAGCAGAACAGCTCAGGGA 210
||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||
Sbjct 2 GGGACTTGGTGGAGAAG--GCGATGATAACAAGATCGAATTTAGCAGAACAGCTGAGGGA 59
Query 211 ATATCAGATTAGATCAAAGCATGATTGGGCCTCCGTTTCTTTCTTCTCTTCCACCTCCAA 270
||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 60 GTATCAGATTAGATCAAAACATGATTGGGCTTCCGTTTCTTTCTTTTCTTCAACCTCCAA 119
Query 271 TTTCTCTTCCTCCAGGGTTGATGTTGTAGTCTTTGTCATATGGGAACTAGTGATGTTAGC 330
|||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 120 TTTCTCTTCCTCCAGGGTCGATGTCGTAGTATTTGTCATATGGGAACTAGTGATCTTAGC 179
Query 331 ACTCGTGGTGTTTTCAGCTGTATCCTTGTACTTCAGGCGGTTGCAACTTGCTTTTATCCT 390
| || ||||||||||||| |||||||| ||||| ||||||||||| || || || |||||
Sbjct 180 ATTCCTGGTGTTTTCAGCAGTATCCTTTTACTTTAGGCGGTTGCAGCTCGCATTCATCCT 239
Query 391 GCTTTGTGTCACCTTACTATTACTCCTCTGTATGAAAATCACAAAGCAAGTGAGACATGC 450
| ||||||| |||||||||| || ||||||||||||||||||||||||||||||| ||
Sbjct 240 GGTTTGTGTTGCCTTACTATTGTTCGTCTGTATGAAAATCACAAAGCAAGTGAGACAAGC 299
Query 451 TAGGAAGAAGAAGCGAAGGATGCTTCTTCCTCTCTCTATGTAAAGACCGAAACCATTGAG 510
||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 300 AAGGAAGAAGAAGCGAAGAATGCTTCTTCCTCTCTCTATGTAAAGACCGAAACCACTGAG 359
Query 511 C 511
|
Sbjct 360 C 360
> Ahg921010 jgi|Araly1|921010|scaffold_102291.1
Length=364
Score = 320 bits (173), Expect = 1e-86
Identities = 281/333 (84%), Gaps = 7/333 (2%)
Strand=Plus/Plus
Query 168 AAGCGATGATAACAAGATCGAATCTAGCAGAACAGCTCAGGGAATATCAGATTAGATCAA 227
|||||||||| |||||||||||||||||||| ||||| ||||||||||||||| |||| |
Sbjct 16 AAGCGATGATTACAAGATCGAATCTAGCAGAGCAGCTGAGGGAATATCAGATTCGATCTA 75
Query 228 AGCATGATTGGGCCTCCGTTTCTTTCTTCTCTTCCACCTCCA--ATTTC-TCTTCCTCCA 284
||||||||||||| || || ||||||||||| || ||||| | |||| |||||||| |
Sbjct 76 AGCATGATTGGGCTTCTGTCTCTTTCTTCTCGTCGACCTCGAGTTTTTCTTCTTCCTCTA 135
Query 285 GGGTTGATGTTGTAGTCTTTGTCATATGGGAACTAGTGATGTTAGCACTCGTGGTGTTTT 344
|||| |||||||||||||||||||| ||||| ||||| || |||||| || | |||||||
Sbjct 136 GGGTGGATGTTGTAGTCTTTGTCATCTGGGAGCTAGTCATCTTAGCATTCTTCGTGTTTT 195
Query 345 CAGCTGTATCCTTGTACTTCAGGCGGTTGCAACTTGCTTTTATCCTGCTTTGTGTCACCT 404
|||| || ||||||||||||| |||||| ||||| || || ||| || | |||||||| |
Sbjct 196 CAGCGGTTTCCTTGTACTTCAAGCGGTTACAACTCGCATTCATCTTGATATGTGTCACGT 255
Query 405 T-ACTATTACTCCTCTGTATGAAAATCACAAAGCAAGTGA-GACATGCTAGGAAGAAGAA 462
| | | |||| | || ||||| ||||||||||||||| | | || |||||||||||
Sbjct 256 TGA-TGCTACTAATTTGCATGAAGGTCACAAAGCAAGTGAGGTTA-GCCAGGAAGAAGAA 313
Query 463 GCGAAGGATGCTTCTTCCTCTCTCTATGTAAAG 495
|||||||||||||||||| || |||||||||||
Sbjct 314 GCGAAGGATGCTTCTTCCGCTATCTATGTAAAG 346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31603898193
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5