BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G76190.1

Length=372
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg316541 jgi|Araly1|316541|fgenesh1_pm.C_scaffold_2001574           545    6e-155


> Ahg316541 jgi|Araly1|316541|fgenesh1_pm.C_scaffold_2001574
Length=369

 Score =  545 bits (295),  Expect = 6e-155
 Identities = 349/374 (93%), Gaps = 7/374 (2%)
 Strand=Plus/Plus

Query  1    ATGAAGAAACTAAATTCTAAAGGGATTAGACTCTCCGAATTGATGGAGAAATGGAGAAGA  60
            |||||||||||| ||||||| ||||||||||||||||||||||||||||||| | | |||
Sbjct  1    ATGAAGAAACTATATTCTAAGGGGATTAGACTCTCCGAATTGATGGAGAAAT-G-G-AGA  57

Query  61   AGGAAGAAAGGGC-ACTTCGCTGTGTACACGAACGAAGGGAAGAGATTCGTTTTACCATT  119
            ||||||| | ||| | |||||| |||||||||| |||||||||||||||||||| |||||
Sbjct  58   AGGAAGAGA-GGCTATTTCGCTTTGTACACGAAGGAAGGGAAGAGATTCGTTTTGCCATT  116

Query  120  GGATTATCTGAATCATCC-GATGTTACAGGTGCTATTGCAAATGGCTGAGGATGAGTTTG  178
            ||||||| ||||||| || ||||||||| ||| ||||| | |||||||| ||||||||||
Sbjct  117  GGATTATTTGAATCA-CCGGATGTTACAAGTGTTATTGGAGATGGCTGAAGATGAGTTTG  175

Query  179  GGACTACCATTGATGGTCCTTTAAAAGTTCCTTGCGATGGAAGTTTAATGGATCACATCA  238
            |||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct  176  GGACTACCATCGATGGTCCTTTAAAGGTTCCTTGCGATGGAAGTTTATTGGATCACATCA  235

Query  239  TCATGCTTGTGAGAAGGAGCATGTCCCATGATTATGATGATGTGGAGAAGTCTTCCACGA  298
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  236  TCATGCTTGTGAGAAGGAGCAAGTCCCATGATTATGATGATGTGGAGAAGTCTTCCACGA  295

Query  299  GCAGCACCTGCAAGGGAGCTTCAATCTCTTCTCTCTTTCGTGGACAGAGCCAGCTTCAGT  358
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  296  GCAGCAGCTGCAAGGGAGCTTCAATCTCTTCTCTCTTTCGTGGACAGAGCCAGCTTCAGT  355

Query  359  CATTAGTTTCCTAA  372
            ||||||||||||||
Sbjct  356  CATTAGTTTCCTAA  369



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13278144972


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5