BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G76200.1

Length=559
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg476772 jgi|Araly1|476772|fgenesh2_kg.2__1902__AT1G76200.1         878    0.0  


> Ahg476772 jgi|Araly1|476772|fgenesh2_kg.2__1902__AT1G76200.1
Length=535

 Score =  878 bits (475),  Expect = 0.0
 Identities = 522/543 (96%), Gaps = 9/543 (2%)
 Strand=Plus/Plus

Query  18   TTGTCAAAGCTGAGGAGAAAGAAAGCTTTTTCGGTCTGAAATTGAAGTGCGAATCGGGGA  77
            |||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct  1    TTGTCAAAGCAGAGGAGAAAGAAAGC--TTTCGGTCTGAAATTGAAGTGCGAATCGGGGA  58

Query  78   ATCTAGGGTTTCGAGAGAGAGATAATGGGTGGAGGAGGACATGGCGGAGGTATAACTTAC  137
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  59   ATCTAGGGTTTCGAGAGAGAGAAAATGGGTGGAGGAGGACATGGCGGAGGTATAACTTAC  118

Query  138  AAGGGAGTCACTGTCCACACTCCCAAGACTTGGCACACCGTCACCGGAAAAGGCTTGTGC  197
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  119  AAGGGAGTCACTGTTCACACTCCCAAGACTTGGCACACCGTCACCGGAAAAGGCTTGTGC  178

Query  198  GCCGTTATGTGGTTCTGGATTCTGTACAGGGCAAAGCAAGATGGTCCTGTAGTTATGGGA  257
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  179  GCCGTTATGTGGTTCTGGATTCTGTACAGGGCAAAGCAAGATGGTCCTGTAGTTATGGGA  238

Query  258  TGGAGGCACCCTTGGGATGGTCATGGTGATCACGGTCACGGAGATCATCACTAGGTCTCA  317
            |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct  239  TGGAGGCACCCTTGGGATGGCCATGGTGATCACGGTCACGGGGATCATCACTAGGTCTCA  298

Query  318  CTGAACCTTTGAAGATCATGACGAAAAAAGG-ATCGTCTCTTGtttttttCTTAATTTTC  376
            ||||||||||||||||||||||||||||||| |||||||||||||||||    |||||||
Sbjct  299  CTGAACCTTTGAAGATCATGACGAAAAAAGGGATCGTCTCTTGTTTTTT----AATTTTC  354

Query  377  AGCTTCATATGTCGAAATAAAGAGAACTGTGAAGAAGACGTGAATTGTTTTTGTACACAA  436
            |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct  355  AGCTTCATATGTCGAAATAAAGAGAACTGTGAAGAAGACGTGAAATGTTTGTGTACACAA  414

Query  437  CTTTGTAAGACTTGCTGCTTCTGTTTTAAGTTACTACTTGTGTGTTGCACTTCCTGATCA  496
            ||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||| |
Sbjct  415  CTTTGTAAGACTTGCTGCTTCTGTTTTAAGTTACTGCTTGTGT-T-GCACTTCCTGATGA  472

Query  497  TGTTGTTATTTTGCTGTCAACAAATTAATTTGAAATAAAACGCATTGCGAGATTCGTGTT  556
            |||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct  473  TGTTGTCATTTTGCTGTCTACAAATTAATTTGAAATAAAATGCATTGCGAGATTCGTGTT  532

Query  557  TTT  559
            |||
Sbjct  533  TTT  535



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20413240115


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5