BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76210.1
Length=1032
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927012 jgi|Araly1|927012|scaffold_202573.1 1162 0.0
> Ahg927012 jgi|Araly1|927012|scaffold_202573.1
Length=726
Score = 1162 bits (629), Expect = 0.0
Identities = 691/720 (96%), Gaps = 7/720 (1%)
Strand=Plus/Plus
Query 76 TCTCGAATAGATTAAGATCTATCTATGGCTCAGATTAACTTTGAGGGTTTGAGAGAGCTA 135
||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 TCTCGAATAGATTTAG----ATCTATGGCTCAGATCAACTTTGAGGGTTTGAGAGAGCTA 56
Query 136 CACGACTGCGTAAACTATCTCCTCCATCACTGTCCGAAAACAAGAGAATCTCTGTCTCAA 195
|| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 57 CATGACTGCGTAAACTATCTCCTCGATCACTGTCCGAAAACAAGAGAATCTCTGTCTCAG 116
Query 196 CAAGGACAAGAGAAATGGACGGAACAAGTTTCAGAAGCTTCATTGAGGATGTTAGACATC 255
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 CAAGGACAAGAGAAATGTACGGAACAAGTTTCAGAAGCTTCATTGAGGATGTTAGACATC 176
Query 256 TGTAACGTATCCAAAGATGTGATGACGCTCGTGAAACACAGCTTGCAAGATCTACAACTG 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 TGTAACGTATCCAAAGATGTGATGACGCTCGTGAAACACAGCTTGCAAGATCTACAACTG 236
Query 316 ACTCTACGTGGCAACGAATCATCTGATGTCAACGAGAAGATAGCTGCGTATAATCGGTAT 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 ACTCTACGTGGCAACGAATCATCTGATGTCAACGAGAAGATAGCTGCGTATAATCGGTAT 296
Query 376 AAGAACAAGCTCAAGAAGGAGACACTGAAATGCTTAAACTGTTTGAAGAACATGAAAGGA 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 AAGAACAAGCTCAAGAAGGAGACACTGAAATGCTTAAACTGTTTGAAGAACATGAAAGGA 356
Query 436 AACGAAGGAAGAGTGGCCATGCCAATAGAACAGAACCTTCTGTTTGTCA-CAGAAGTTTT 494
| ||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||
Sbjct 357 AGCGAAGGAAGAGTGGCCATGCCAATAGAACAGAACCTTCTGTTTGT-AGCAGAGGTTTT 415
Query 495 GAAGGAAGTGAGAAGAGTCGTTGTGACGATGGTTGAGTCTTTGTTCTCACTTGGTTGTAT 554
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 416 GAAGGAAGTGAGAAGAGTAGTTGTGACGATGGTTGAGTCTTTGTTCTCACTTGGTTGCAT 475
Query 555 TCCTTGGCTAGAGAAGAGATCGAGCAAAGGGTCTTTGTCTTCGATCTTTTCCATTCGGTC 614
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 476 TCCTTGGCTAGAGAAGAGATCGAGCAAAGGGTCTTTGTCTTCGATCTTTACCATTCGGTC 535
Query 615 TTCCTATTTGTTAGATGATGAATGGGACGAGACTGCGGTGCAAAGCGCGACTACGAGGTT 674
||| |||||||||||||||| |||||||||||| || ||||||||||||||||| |||||
Sbjct 536 TTCTTATTTGTTAGATGATGTATGGGACGAGACCGCAGTGCAAAGCGCGACTACAAGGTT 595
Query 675 GGAGGCGGCGGAGATTACTGTAGTGGAGCTTGAAATAGAGTTGGAATCTATTTTCCGGCG 734
|||||| ||||||||| |||||| ||||||||| ||||||||||| ||||||||||||||
Sbjct 596 GGAGGCAGCGGAGATTGCTGTAGAGGAGCTTGAGATAGAGTTGGAGTCTATTTTCCGGCG 655
Query 735 ATTGATTCAGACGAGAGTTTCACTTCTTAATATTCTCACCAACTAGATAATATATGATAT 794
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 656 ATTGATTCAGACGAGAGTTTCACTTCTTAATATTCTCACCAACTAGATAATA-ATAATAT 714
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38389777419
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5