BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G76220.1 Length=771 Score E Sequences producing significant alignments: (Bits) Value Ahg476774 jgi|Araly1|476774|fgenesh2_kg.2__1904__AT1G76220.1 1214 0.0 > Ahg476774 jgi|Araly1|476774|fgenesh2_kg.2__1904__AT1G76220.1 Length=771 Score = 1214 bits (657), Expect = 0.0 Identities = 735/773 (95%), Gaps = 4/773 (1%) Strand=Plus/Plus Query 1 ATGGCTTGTACTTCATCATCTGGTGCACACGTGCGTTCAACAAGCTGGTCCGAAGACGTT 60 |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGATGGTACTTCATCATCTGGTGCACACGTGCGTTCAACAAGCTGGTCCGAAGACGTT 60 Query 61 AATCCTCTGTCTCGAGCCATCGAAGATCATCTTCTGTTACTAAAGAAAAGACCAGAGTCC 120 |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 61 AATCCTCTGTCTCGAGCCATCGAAGATCATCTTCTGATACTAAAGAAAAAACCAGAGTCC 120 Query 121 GCTCGTCGGAAACTTGGAGTTTTAAAGAATCTGTACGAGGTTGTCGAAGTTTTCCTCCGT 180 |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 121 GCTCGTCGGAAACTTGGAGTTTTAAATAATCTCTACGAGGTTGTCGAAGTTTTCCTCCGT 180 Query 181 TTTCAAACGACTAAAACTCAAAAGTCTTTCACAGGATTTGAAGATGTTTCTGACGGATTC 240 ||||||||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||| Sbjct 181 TTTCAAACGACCAAAACTCAAAAATCTTTCACCGGATTTGAAGATGTTTCCGACGGATTC 240 Query 241 ATCGAGGTTCTTGATATCTGCAGCACGATCAGAGACGTTCTGATGGAGATAAAGGAACAA 300 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 241 ATCGAGGTTCTTGATATTTGCAGCACGATCAGAGACGTTCTGATGGAGATAAAGGAACAA 300 Query 301 GTCAGGGAACTCGAATCAAGCTTGAGGAGGAGATTGATCAGAAGCAAGTCAGGAGAAGAT 360 || |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 301 GTTAGGGAACTCGAATCGAGCTTGAGGAGGAGATTGATCAGAAGCAAATCAGGAGAAGAT 360 Query 361 CAAGAAGCTTTCGTGGCGCGTGAGAC-AGACGCGTACGTGTTTAAGAGAAGAGCACTGAG 419 |||||||||||||||||||||||| | |||||| ||||||||||||||||||||| |||| Sbjct 361 CAAGAAGCTTTCGTGGCGCGTGAG-CTAGACGCTTACGTGTTTAAGAGAAGAGCATTGAG 419 Query 420 CAGAACCATCGTCAAACAATTGAAGAAAACAGAGGAGAAGATGAGGAAGAGGAAGAGAGA 479 |||||| || |||||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct 420 CAGAACAATTGTCAAACAATTGAAGAAAACAGAGGATAAGATGAGGAAGAAGAAGAGAGA 479 Query 480 TTGTGGAGATGTCATTAATGTAATGAAAAGAGTTGAAAAGACCAGCTTTGATGTTTTGGT 539 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 480 TTGTGGAGACGTCATTAATGTAATGAAAAGAGTTGAAAAGACGAGCTTTGATGTTTTGGT 539 Query 540 TTCTTTGTTGATTGAGGTAGTGACGAAGGATCAGAGAGATCAAAAGAA-AGGATCAAGGA 598 |||||||||||| | || ||||||||||||||||||||| | ||||| || |||||| | Sbjct 540 TTCTTTGTTGATCCAAGTCGTGACGAAGGATCAGAGAGATGATAAGAAGAG-ATCAAGAA 598 Query 599 GAGGAATTGTGTCGAGGATTTTTAATAAGAAGAATCAAGAAGTTGATGTGGATGAGCTGA 658 ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| Sbjct 599 GAGGAATTGTGTCGAGGGTTTTTAATAAGAAGAATCAAGAAGTTGATGCGGATGAGCTGA 658 Query 659 AGAAGTTGAGAGAAACAGAACATGAGATTGAAGAAACAGAGAAAGAGTTGGAGTGTGTGT 718 ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| Sbjct 659 AGAAGTTGAGAGAAACAGAGCATGAGATTGAAGAAACAGAGAGAGAGTTGGAGTGTGTGT 718 Query 719 ATAAGAAACTGTTGAAGACAAGAGTTTCTTTTCTTAACATGCTTACTCTTTGA 771 ||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 719 ATAAGAAACTGTTGAAGACAAGAGTTTCTTTTCTTAATATGCTTACTCTTTGA 771 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28439696082 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5