BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76220.1
Length=771
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476774 jgi|Araly1|476774|fgenesh2_kg.2__1904__AT1G76220.1 1214 0.0
> Ahg476774 jgi|Araly1|476774|fgenesh2_kg.2__1904__AT1G76220.1
Length=771
Score = 1214 bits (657), Expect = 0.0
Identities = 735/773 (95%), Gaps = 4/773 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTGTACTTCATCATCTGGTGCACACGTGCGTTCAACAAGCTGGTCCGAAGACGTT 60
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATGGTACTTCATCATCTGGTGCACACGTGCGTTCAACAAGCTGGTCCGAAGACGTT 60
Query 61 AATCCTCTGTCTCGAGCCATCGAAGATCATCTTCTGTTACTAAAGAAAAGACCAGAGTCC 120
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 61 AATCCTCTGTCTCGAGCCATCGAAGATCATCTTCTGATACTAAAGAAAAAACCAGAGTCC 120
Query 121 GCTCGTCGGAAACTTGGAGTTTTAAAGAATCTGTACGAGGTTGTCGAAGTTTTCCTCCGT 180
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 121 GCTCGTCGGAAACTTGGAGTTTTAAATAATCTCTACGAGGTTGTCGAAGTTTTCCTCCGT 180
Query 181 TTTCAAACGACTAAAACTCAAAAGTCTTTCACAGGATTTGAAGATGTTTCTGACGGATTC 240
||||||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 181 TTTCAAACGACCAAAACTCAAAAATCTTTCACCGGATTTGAAGATGTTTCCGACGGATTC 240
Query 241 ATCGAGGTTCTTGATATCTGCAGCACGATCAGAGACGTTCTGATGGAGATAAAGGAACAA 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATCGAGGTTCTTGATATTTGCAGCACGATCAGAGACGTTCTGATGGAGATAAAGGAACAA 300
Query 301 GTCAGGGAACTCGAATCAAGCTTGAGGAGGAGATTGATCAGAAGCAAGTCAGGAGAAGAT 360
|| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 GTTAGGGAACTCGAATCGAGCTTGAGGAGGAGATTGATCAGAAGCAAATCAGGAGAAGAT 360
Query 361 CAAGAAGCTTTCGTGGCGCGTGAGAC-AGACGCGTACGTGTTTAAGAGAAGAGCACTGAG 419
|||||||||||||||||||||||| | |||||| ||||||||||||||||||||| ||||
Sbjct 361 CAAGAAGCTTTCGTGGCGCGTGAG-CTAGACGCTTACGTGTTTAAGAGAAGAGCATTGAG 419
Query 420 CAGAACCATCGTCAAACAATTGAAGAAAACAGAGGAGAAGATGAGGAAGAGGAAGAGAGA 479
|||||| || |||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 420 CAGAACAATTGTCAAACAATTGAAGAAAACAGAGGATAAGATGAGGAAGAAGAAGAGAGA 479
Query 480 TTGTGGAGATGTCATTAATGTAATGAAAAGAGTTGAAAAGACCAGCTTTGATGTTTTGGT 539
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 480 TTGTGGAGACGTCATTAATGTAATGAAAAGAGTTGAAAAGACGAGCTTTGATGTTTTGGT 539
Query 540 TTCTTTGTTGATTGAGGTAGTGACGAAGGATCAGAGAGATCAAAAGAA-AGGATCAAGGA 598
|||||||||||| | || ||||||||||||||||||||| | ||||| || |||||| |
Sbjct 540 TTCTTTGTTGATCCAAGTCGTGACGAAGGATCAGAGAGATGATAAGAAGAG-ATCAAGAA 598
Query 599 GAGGAATTGTGTCGAGGATTTTTAATAAGAAGAATCAAGAAGTTGATGTGGATGAGCTGA 658
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 599 GAGGAATTGTGTCGAGGGTTTTTAATAAGAAGAATCAAGAAGTTGATGCGGATGAGCTGA 658
Query 659 AGAAGTTGAGAGAAACAGAACATGAGATTGAAGAAACAGAGAAAGAGTTGGAGTGTGTGT 718
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 659 AGAAGTTGAGAGAAACAGAGCATGAGATTGAAGAAACAGAGAGAGAGTTGGAGTGTGTGT 718
Query 719 ATAAGAAACTGTTGAAGACAAGAGTTTCTTTTCTTAACATGCTTACTCTTTGA 771
||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 719 ATAAGAAACTGTTGAAGACAAGAGTTTCTTTTCTTAATATGCTTACTCTTTGA 771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28439696082
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5