BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76230.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476775 jgi|Araly1|476775|fgenesh2_kg.2__1905__AT1G76230.1 497 3e-140
> Ahg476775 jgi|Araly1|476775|fgenesh2_kg.2__1905__AT1G76230.1
Length=517
Score = 497 bits (269), Expect = 3e-140
Identities = 414/480 (86%), Gaps = 26/480 (5%)
Strand=Plus/Plus
Query 115 CGAAAGAGGAATATTTACCAAACA--AGCAAGTTTCAGATGAATCAGAACAACTTGAGAA 172
|||||||||||||||| || | || | |||| || | | ||||| ||||||||||
Sbjct 23 CGAAAGAGGAATATTTGCCTACCATTACCAAG---CA-A-GTTTCAGATGAACTTGAGAA 77
Query 173 GAGTTGTTTGACAGAAGAAGAAGATGCGTGTTTGTCTGATGCTAGTCATAGCAGTAAGAA 232
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 78 GAGTTGTTTGACAGAAGAAGAAGATGCCTGTTTGTCTGATGCTAGTCATAGCAGTAAGAA 137
Query 233 GACGATAAGGGAAGATGCAATTTGTGAATCAAAGAATAGAAAGAAGTATAAGCCAAGCAA 292
|| ||||||||||||| | | ||||||||||||||| || ||||| | ||||| |||||
Sbjct 138 GAGGATAAGGGAAGATACGACTTGTGAATCAAAGAAGAGTAAGAAACAGAAGCCGAGCAA 197
Query 293 CGAATC-TGGATTCAACACGTTATTTGATGATGACTGGCTTTTTGGTAACAATCAGCAAA 351
||| | ||| ||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 198 AGAACCTTGG-TTCAAGACGTTATCTGATGATGACTGGCTTTTTGGTAACAATCAGCAAA 256
Query 352 AGAATGTTGTTACCACTAATAAAGCCGCTATCAAGAACGATGCAGAGATGATCATGAAGT 411
|| | | | |||| | ||||||||| |||||||||||||||| ||| ||||||| |||||
Sbjct 257 AG-A-G-TCTTACTAATAATAAAGCAGCTATCAAGAACGATGAAGACATGATCAGGAAGT 313
Query 412 TGCTGCAGAGATCATGTGGAGATTCCTTGTTTCCTAGCTAAGGCCCAGTTTTCGCCTCAA 471
|||||||||||||||||||||||||||||||||||| | ||| ||||||| |||||||
Sbjct 314 TGCTGCAGAGATCATGTGGAGATTCCTTGTTTCCTA---A-GGCTCAGTTTTTGCCTCAA 369
Query 472 TTCGGAATATTTGTATTACCATATACAGTTCCGTTCTAACTGTCTCTGTATTGTTTTCTC 531
|||||||| |||||| ||||||||||||||||||| ||| ||||| |||||||||||
Sbjct 370 TTCGGAATTTTTGTAGTACCATATACAGTTCCGTTTTAA--GTCTCCATATTGTTTTCTT 427
Query 532 ATCCCTCGATCGGATTTAGCCTTAGCCTGTGATCTATTCGGGTATGTATATTTCATATCC 591
|| |||| | | | |||||||||||||||||||||||||| || |||||||||||||
Sbjct 428 ATTCCTC-A--G-AGTTAGCCTTAGCCTGTGATCTATTCGG--AT--ATATTTCATATCC 479
Score = 73.1 bits (39), Expect = 2e-12
Identities = 39/39 (100%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 637 CGTACAAGAGTTTCCTTTTTGTAGATTTCCTTTTCCTTG 675
|||||||||||||||||||||||||||||||||||||||
Sbjct 479 CGTACAAGAGTTTCCTTTTTGTAGATTTCCTTTTCCTTG 517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25084879386
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5