BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76250.1
Length=1602
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927017 jgi|Araly1|927017|scaffold_202578.1 1932 0.0
> Ahg927017 jgi|Araly1|927017|scaffold_202578.1
Length=1348
Score = 1932 bits (1046), Expect = 0.0
Identities = 1252/1352 (93%), Gaps = 11/1352 (1%)
Strand=Plus/Plus
Query 167 CGATCACTTACGCCGCCGTTATGTACGTTTCCAGGAGAATCTCCGACGTCGATCGTCGtc 226
|||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1 CGATCACTTACGCCACCGCCATGTACGTTTCCAGGAAAATCTCCGACGTCGATCGTCGTC 60
Query 227 ttctcctccttctcataatcccatctctcaccctcctcgtcttaatctctttctcatctc 286
|||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 61 TTCTTCTCCTTCTCATAATCCCGTCTCTCTCCCTCCTCGTCTTAATCTCTTTCTCATCTC 120
Query 287 tctcaCTTGATCCTTTTCCAACTCTAGCCCCTCTTCGTAACCTAATCTACACTCATACCC 346
|||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||
Sbjct 121 TCTCCCTTGATCCTTTTCCAACCCTAGCACCTCTTCGTAACCTAATCTACACTCATCCCC 180
Query 347 TAACCGT--C-ACCGATTTCACCG-TCGAATTGTCAGATTCGAACCCTAACGACGTTA-T 401
||||||| | ||||| | ||| | | ||| ||||||||||||| |||||||| |
Sbjct 181 TAACCGTCACAACCGAAACCTCCGATTTCACCGTC-GATTCGAACCCTAGCGACGTTATT 239
Query 402 CCAAGCGGAGGAGATGGAAAATCGACGGCGGAGGAAGAGGGAGGAGTTGGTTAAGTCGAA 461
|| ||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 240 CC-GGCGGAGGAGATGGAAAATCAACGGCGGAGGAAGAGGGAGGAGTTGGAAAAGTCCAA 298
Query 462 GATTGCGGTGTGTTTGGTAGGAGGAGCGAGGCGGTTTGAGTTAACCGGACCGTCGATTAT 521
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 299 GATTGCGGTGTGTTTGGTAGGAGGAGCGAGGCGGTTCGAGTTAACCGGACCGTCGATTAT 358
Query 522 GGAGAAGATCTTGAGGGTTTATCCTAATGCTGATTTGTTTCTTAATAGTCCTCTCGACAA 581
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
Sbjct 359 GGAGAAGATCTTGAGGGTTTATCCAAATGCTGATTTGTTTCTTAATAGTCCTCTTGACCA 418
Query 582 AAATTC-TTTCAAACTTCGGTTACTTAAGGACGCACCAAGACTTGCTTGGGTTCGTATCT 640
|||||| ||| ||||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct 419 AAATTCGTTT-AAACTTCGGTTGCTTAAGGACGCACCAAGACTCGCGTGGGTTCGTATCT 477
Query 641 TTGAGCCTAAGCCAATCAATGAGACTGAGCCGATGGTTCGAGTCCTCACACCTATGAATT 700
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TCGAGCCTAAGCCGATCAATGAGACTGAGCCGATGGTTCGAGTCCTCACACCTATGAATT 537
Query 701 CGCCCAATGGCATTAAGGGCTTATTACAGTACTTCAACCTTGTGGAAGGTTGCATCACGA 760
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 538 CGCCCAATGGCATTAAGGGCTTATTACAGTACTTCAACCTTGTAGAAGGTTGCATCACTA 597
Query 761 TGATAAAGGCATACCAAAACGAGAATAACTTCACATACGACTGGATAGTCCGGACCCGAG 820
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 598 TGATAAAGGCATACCAAAACGAGAATAACTTCACATACGAGTGGATAGTCCGGACCCGTG 657
Query 821 TTGATGGTTACTGGGCTGACCCGCTCGACCCGGAATACTTCATACCGGGTCAATACCTAG 880
|||| ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 658 TTGACGGTTACTGGGCTGACCCGCTCGACCCGGAATACTTTATACCTGGTCAGTACCTAG 717
Query 881 TTCCACCTGGATCCTCTTATGGTGGTCTCAACGACCGTTTCGGCGTCGGAGATCTCAACA 940
| ||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct 718 TCCCACCTGGATCCTCTTACGGTGGTCTCAACGACCGTTTTGGCGTCGGCGATCTCAACA 777
Query 941 CCTCGACGGTAGCTCTCTCTCGCCTCTCCCTCATTCCCGACCTCGATTCAGCCGGGTTAA 1000
| ||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||
Sbjct 778 CTTCGACGGTAGCTCTCTCGCGCCTCTCCCTCATTCCCGACCTCGACTCAGCTGGGTTAA 837
Query 1001 CTCATCTGAACTCCGAGTCCGCTTTCAAGGCTCAGCTCACAACCCAACGTGTTCCTTACG 1060
||||||| ||||||||||| || |||||||||||||||||||| || ||||| |||||||
Sbjct 838 CTCATCTCAACTCCGAGTCTGCCTTCAAGGCTCAGCTCACAACTCACCGTGTCCCTTACG 897
Query 1061 TCACCAAACCTCTCCCTTTCTGCATCATGACTGATCGGACCTACGATTTCCCTCCATATA 1120
|||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||
Sbjct 898 TCACCAAACCTCTCCCTTTCTGTATCATGACCGATCGGACCTACGATTTTCCTCCGGCTA 957
Query 1121 GATACGGAGTTCCAGTGGCGGCACTATCGAGCCGTGGACCGTTAAACGGTGCCAAGTGCC 1180
|||||||||||||||||||||| || ||||||| ||||||||| || |||||||||||||
Sbjct 958 GATACGGAGTTCCAGTGGCGGCTCTTTCGAGCCATGGACCGTTGAATGGTGCCAAGTGCC 1017
Query 1181 GTCCTTGCACGGTCGCATGCAACGGCTCTTGCGTGGCAGAAGTGATGGGAAAGCTGAATA 1240
|||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1018 GTCCTTGCACGGTCGCGTGCAACGGCTCGTGCGTGGCGGAAGTGATGGGAAAGCTGAATA 1077
Query 1241 AAGAGTGGAGCTGGACAGAGTGGGAAAACGAGACGGTGGAGCTGTGCGACGCACATGGAG 1300
|||||||||||||||| |||||||| |||| | |||||||||| ||||||| |||||| |
Sbjct 1078 AAGAGTGGAGCTGGACGGAGTGGGAGAACGGGGCGGTGGAGCTTTGCGACGGACATGGGG 1137
Query 1301 AATGGGAGAAAGGTTGGGAGAAGATTTTTGACGAAACCGCTGGAGAAAAACTCGCACTTG 1360
|||||||| ||||||||||||||||||||||| ||||||| || ||||| ||||||||||
Sbjct 1138 AATGGGAGGAAGGTTGGGAGAAGATTTTTGACAAAACCGCCGGTGAAAACCTCGCACTTG 1197
Query 1361 CGAGGAAACGAGTCGGTGGTTTGGATTCGAGGAGATGTGTGGAAGAGTTTGAAAATATGA 1420
||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1198 CGAGGAAACGAATCGGTGATTTGGATTCAAGGAGATGTGTGGAAGAGTTTGAAAATATGA 1257
Query 1421 GAGGAATGGCCGTTAAATGGGAAGCTCCCGCCTCCGAACAGATTTGTACT-TTGGGCTTA 1479
|||||||| ||||||||||||||||||||||||| ||||||||||||| | ||||| |||
Sbjct 1258 GAGGAATGACCGTTAAATGGGAAGCTCCCGCCTCTGAACAGATTTGTA-TGTTGGGTTTA 1316
Query 1480 CGGCCCAATTAGAACATATCGGGCTTTAGGTC 1511
||||||||||||||||||||||||||||||||
Sbjct 1317 CGGCCCAATTAGAACATATCGGGCTTTAGGTC 1348
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60030226120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5