BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76260.1
Length=1416
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476778 jgi|Araly1|476778|fgenesh2_kg.2__1908__AT1G76260.1 2146 0.0
Ahg472283 jgi|Araly1|472283|fgenesh2_kg.1__2237__AT1G20540.1 1201 0.0
> Ahg476778 jgi|Araly1|476778|fgenesh2_kg.2__1908__AT1G76260.1
Length=1420
Score = 2146 bits (1162), Expect = 0.0
Identities = 1343/1428 (94%), Gaps = 22/1428 (2%)
Strand=Plus/Plus
Query 1 ATCTTCACGAAACCCAGCAAAATCAGAGAGCGGCAAATCGTTGAAGAGAGATCTTCTTCT 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATCTTCTCGAAACCCAGCAAAATCAGAGAGCGGCAAATCGTTGAAGAGAGATCTTCTTCT 60
Query 61 TCCTGAATCCGTAACGTTAGCTCAGGCGTAAGAGCATAATGCAAGGAGGATCATCGGGTA 120
|||||||||||||||||| ||| |||||| ||| || ||||||||| |||||||||||||
Sbjct 61 TCCTGAATCCGTAACGTTGGCTGAGGCGTGAGAACACAATGCAAGGTGGATCATCGGGTA 120
Query 121 TTGGTTATGGTTTGAAGTATCAGGCCAGATGTATATCGGATGTTAAAGCAGATAGAGATC 180
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 121 TTGGATATGGTTTGAAGTATCAGGCCAGATGTATATCGGATGTGAAAGCAGATAGAGATC 180
Query 181 ACACTAGCTTCCTCACTGGAACCCTAAGCTTGAAAGAAGAAAATGAGGTTCATTTGCTTC 240
|||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 181 ACACCAGCTTCCTCACTGGAACCCTAAGCCTGAAAGAAGAAAACGAGGTTCATTTGCTTC 240
Query 241 GTTTGTCTTCTGGTGGATCTGAGCTGTTATGTGAGGGATTGTTCTCGCATCCTAATGAAA 300
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 241 GTTTGTCATCTGGTGGATCTGAGCTGTTATGTGAGGGTTTGTTCTCGCATCCTAATGAAA 300
Query 301 TTTGGGACCTTGCTTCTTCCCCTTTTGATCAACGCATTTTCTCTACTGTCTTCTCCACTG 360
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTTGGGACCTTGCTTCTTGCCCTTTTGATCAACGCATTTTCTCTACTGTCTTCTCCACTG 360
Query 361 GCGACTCATATGGAGCAGCAATATGGCAGATTCCTGAGCCATATGGTCAATCGAATTCTT 420
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GCGAGTCATTTGGAGCAGCAATATGGCAGATTCCTGAGCCATATGGTCAATCGAATTCTT 420
Query 421 CAACATTGGAATGTGTTGCTTCCCTTGATGCACATGTTGGTAAGATTAATTGCGTTCTTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CAACATTGGAATGTGTTGCTTCCCTTGATGCACATGTTGGTAAGATTAATTGCGTTCTTT 480
Query 481 GGTGTCCCTCTGGAAATTCTGACAAGTTAATCAGCATGGATGAACAAAATCTTGTCTTCT 540
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 481 GGTGTCCCTCTGGAAATTCTGACAAGTTAATCAGCATGGACGAACAAAACCTTGTCTTGT 540
Query 541 GGAGTTTAGACTCTTCAAAGAAAAGTGCGGAGGTTTTATCTAAGGAGTCAGCTGGTATGC 600
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 541 GGAGTTTAGACTCTTCAAAGAAAAGTGCTGAGGTTTTATCTAAGGAGTCGGCTGGTATGC 600
Query 601 GTCATTCTTTATCTGGTGGAGCATGGAATCCACATGATGTGAATTCTGTTGCAGCAACTT 660
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GCCATTCTTTATCTGGTGGAGCATGGAATCCACATGATGTGAATTCTGTTGCAGCAACTT 660
Query 661 CTGAATCATCTATCCAGTTTTGGGACTTACGTACTATGAAGAAGAATAATTCAATTGAAC 720
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 661 CTGAATCATCTATCCAGTTTTGGGATTTACGTACTATGAAGAAGGCTAATTCAATTGAAC 720
Query 721 GTGCCCATGTACGTAATGTTGACTACAATCTCAAGAGAGAACATATACTCGTTTCTGCGG 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 721 GTGCCCATGTACGTAATGTTGACTACAATCTCAAGAGAGAACATATACTCGTTTCTGCAG 780
Query 781 ATGATGAATCTGGTATACATCTCTGGGATCTTCGGAAGACAAA-GTTTCCTGTGCAAGAG 839
|||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||
Sbjct 781 ATGATGAATCTGGTATACATCTCTGGGATCTTCGGAAGACCAATGTT-CCTGTGCAAGAG 839
Query 840 CTCCCTGGTCATACACACTGGACATGGGCTGTCAGGTGTAACCCTGAGTATGAAGAGCTA 899
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CTCCCTGGTCATACACATTGGACATGGGCTGTCAGGTGTAACCCTGAGTATGAAGAGCTA 899
Query 900 ATTCTGAGCGTTGGAACAGACTCAGCTGTCAACTTGTGGTTTGCTTCAGCATCTAGTGAG 959
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 900 ATTCTGAGCGTTGGAACAGACTCAGCTGTCAACTTGTGGTTTGCATCAGCATCTAGTGAA 959
Query 960 CATAAAACATCAGAAAGCCCGGTGGAAGCATCACGTCAGCGTGTGAACCCGTTACTAAAC 1019
||||||| ||| |||||||||||||||||||||||||||||||||||| || |||||
Sbjct 960 AATAAAACCGCAGGAAGCCCGGTGGAAGCATCACGTCAGCGTGTGAACCCATTGCTAAAT 1019
Query 1020 TCTTATACTGACTACGAAGACAGTGTCTACGGCCTTGCTTGGAGCTCGCGTGAGCCTTGG 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TCTTATACTGACTACGAAGACAGTGTCTACGGCCTTGCTTGGAGCTCGCGTGAGCCTTGG 1079
Query 1080 ATTTTTGCATCATTGTCATATGACGGTAGGGTTGTGATCGAATCCGTCAAGCCTTTCCTG 1139
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1080 ATTTTTGCATCATTGTCATATGACGGGAGGGTTGTGATTGAATCCGTCAAGCCTTTCCTA 1139
Query 1140 CCAAGAAGATAGGTCC---CG---A-TGGAAGAAGGCTTCAAAGAAAAAGCTGCATT--C 1190
|||||||||||||| | || | | ||||||| |||||||| |||||||||||| |
Sbjct 1140 CCAAGAAGATAGGTTCATGCGCCCAATCGAAGAAGTCTTCAAAGGAAAAGCTGCATTGTC 1199
Query 1191 ATATGCTATCATTTAAGACAAATTTTGAATGTTTTTATAATAATCACAACATCAAAACTA 1250
||||||| |||||| | |||||||||||| ||||| ||||||||||||||| ||||||||
Sbjct 1200 ATATGCTCTCATTTTACACAAATTTTGAACGTTTTGATAATAATCACAACACCAAAACTA 1259
Query 1251 TTCTTCTACAGTTCTTCAACTTTTACTCGTGTCTTTGTTCATCTC--TATCT--CTCAGC 1306
|||||||||| || || ||||||| |||||||||||||| ||| | ||||| ||||||
Sbjct 1260 TTCTTCTACAATTGTTGAACTTTTGCTCGTGTCTTTGTTTATCACACTATCTTTCTCAGC 1319
Query 1307 ACAAGGCACAAAGATGTAAAACCAAACCTCGTGAAAATACTTTGGTACAAAGTCAATGAA 1366
||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1320 ACAAGTCACAAAGATGTAAAAACAAACCTCGTGAAAATACTC----ACAAAGTCAATGAA 1375
Query 1367 CCTGCTGCTATAATTCAGTTTATTGTAAAGAAAATATTCGGATCAAGT 1414
|||||| |||||||||||||| |||||||||||| ||||||||||
Sbjct 1376 CCTGCT---ATAATTCAGTTTATAATAAAGAAAATATCCGGATCAAGT 1420
> Ahg472283 jgi|Araly1|472283|fgenesh2_kg.1__2237__AT1G20540.1
Length=1260
Score = 1201 bits (650), Expect = 0.0
Identities = 933/1068 (87%), Gaps = 25/1068 (2%)
Strand=Plus/Plus
Query 98 AATGCAAGGAGGATCATCGGGTATTGGTTATGGTTTGAAGTATCAGGCCAGATGTATATC 157
||||||||||||||| ||||| || || || ||||||||||||||||| |||||||||||
Sbjct 33 AATGCAAGGAGGATCGTCGGGAATCGGATACGGTTTGAAGTATCAGGCTAGATGTATATC 92
Query 158 GGATGTTAAAGCAGATA-GAGATCACACTAGCTTCCTCACTGGAACCCTAAGCTTGAAAG 216
|||||| |||||||||| | ||| |||| ||||| ||||||||||| |||| |||||||
Sbjct 93 GGATGTGAAAGCAGATACG-GATTACACAAGCTTTCTCACTGGAACTTTAAGTTTGAAAG 151
Query 217 AAGAAAATGAGGTTCAT-TTGCTTCGTTTGTCTTCTGGTGGATCTGAGCTGT-TATGTGA 274
||||||||||||||||| || ||||||||||| ||||||||||||||||| | |||||||
Sbjct 152 AAGAAAATGAGGTTCATCTT-CTTCGTTTGTCATCTGGTGGATCTGAGCT-TATATGTGA 209
Query 275 GGGATTGTTCTCGCATCCTAATGAAATTTGGGACCTTGCTTCTTCCCCTTTTGATCAACG 334
||| |||||||| ||||||||||| ||||||||||||||||||| |||||| ||||||||
Sbjct 210 GGGTTTGTTCTCTCATCCTAATGAGATTTGGGACCTTGCTTCTTGCCCTTTCGATCAACG 269
Query 335 CATTTTCTCTACTGTCTTCTCCACTGGCGACTCATATGGAGCAGCAATATGGCAGATTCC 394
||||||||||||||||||||||||||| || |||| ||||||||| || ||||| |||||
Sbjct 270 CATTTTCTCTACTGTCTTCTCCACTGGTGAATCATTTGGAGCAGCGATTTGGCAAATTCC 329
Query 395 TGAGCCATATGGTCAATCGAATTCTTCAACA-TTGGAATGTGTTGCTTCCCTTGATGCAC 453
|||| ||||||||||| ||||||| || || ||||| ||||||| || ||||||||||
Sbjct 330 TGAGTTATATGGTCAATTGAATTCTCCA-CAATTGGAGCGTGTTGCATCTCTTGATGCAC 388
Query 454 ATGTTGGTAAGATTAATTGCGTTCTTTGGTGTCCCTCTGGAA-ATTCTGACAAGTTAATC 512
||||||||||||||||||| ||||||||||| || ||||||| || |||||||||||||
Sbjct 389 ATGTTGGTAAGATTAATTGTGTTCTTTGGTGGCCTTCTGGAAGATG-TGACAAGTTAATC 447
Query 513 AGCATGGATGAACAAAATCTTGTCTTCTGGAGTTTAGACTCTTCAAAGAAAAGT--GCGG 570
||||| |||||||||||| || |||| ||||| ||||||| ||| || ||| || || |
Sbjct 448 AGCATTGATGAACAAAATATTTTCTTGTGGAGCTTAGACTGTTCGAA-AAA-GTCTGCTG 505
Query 571 AGGTTTTATCTAAGGAGTCAGCTGGTATGC-GTCATTCTTTATCTGGTGGAGCATGGAAT 629
||||| |||||||||| |||||||| ||| | |||||||||||||||||||||||| ||
Sbjct 506 AGGTTCTATCTAAGGATTCAGCTGGGATGTTG-CATTCTTTATCTGGTGGAGCATGGGAT 564
Query 630 CCACATGATGTGAATTCTGTTGCAGCAACTTCTGAATCATCTATCCAGTTTTGGGACTTA 689
||||||||||| ||| |||||||||||||| |||||||||| ||||||| ||||||||
Sbjct 565 CCACATGATGTAAATGCTGTTGCAGCAACTGGTGAATCATCTGTCCAGTTCTGGGACTTG 624
Query 690 CGTACTATGAAGAAGAATAATTCAATTGAACGTGCCCATGTACGTAATGTTGACTACAAT 749
||||||||||||||| ||| |||||||||| ||| |||||||| |||||||||||||
Sbjct 625 CGTACTATGAAGAAGGTTAACTCAATTGAACATGCTCATGTACGCGGTGTTGACTACAAT 684
Query 750 CTCAAGAGAGAACATATACTCGTTTCTGCGGATGATGAATCTGGTATACATCTCTGGGAT 809
| |||||||||||||||||| || |||| || ||||||||||| |||||| ||||||||
Sbjct 685 CCCAAGAGAGAACATATACTTGTGACTGCAGAGGATGAATCTGGCATACATGTCTGGGAT 744
Query 810 CTTCGGAAGACAAAGTTTCCTGTGCAAGAGCTCCCTGGTCATACACACTGGACATGGGCT 869
|| |||||| | ||| ||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 745 CTCCGGAAGGCCAAGGTTCCTGTCCAAGAGCTTCCTGGTCATACACATTGGACATGGGCT 804
Query 870 GTCAGGTGTAACCCTGAGTATGAAG-AGCTAATTCTGAGCGTTGGAACAGACTCAGCTGT 928
|||| |||||||||||||||||| | | || |||||||||| ||||||||| || |||||
Sbjct 805 GTCAAGTGTAACCCTGAGTATGATGGA-CTGATTCTGAGCGCTGGAACAGATTCGGCTGT 863
Query 929 CAACTTGTGGTTTGCTTCAGCATCT---AGTGA-GCATAAAACATCAGAAAGCCCGGTGG 984
|||| ||||||||||||||||||| ||||| | | ||||| |||||||| || ||||
Sbjct 864 CAACCTGTGGTTTGCTTCAGCATCACCCAGTGATG-ACAAAACCTCAGAAAGTCCTGTGG 922
Query 985 AAGC-ATCACGTCAGCGTGTGAACCCGTTACTAAACTCTTATACTGACTACGAAGACAGT 1043
|| | | |||| ||||||||||||||||| || ||||| || |||||||| |||||||||
Sbjct 923 AATCCA-CACGACAGCGTGTGAACCCGTTGCTTAACTCATACACTGACTATGAAGACAGT 981
Query 1044 GTCTACGGCCTTGCTTGGAGCTCGCGTGAGCCTTGGATTTTTGCATCATTGTCATATGAC 1103
||||| |||||||||||||| || |||||||||||| ||||||||||||| |||||||||
Sbjct 982 GTCTATGGCCTTGCTTGGAGTTCACGTGAGCCTTGGGTTTTTGCATCATTATCATATGAC 1041
Query 1104 GGTAGGGTTGTGATCGAATCCGTCAAGCCTTTCCTGCCAAGAAGATAG 1151
|| || || || ||||||||||||||||||||||| ||||||| ||||
Sbjct 1042 GGAAGAGTCGTCATCGAATCCGTCAAGCCTTTCCTTCCAAGAATATAG 1089
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52945440550
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5