BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76300.1
Length=747
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476783 jgi|Araly1|476783|fgenesh2_kg.2__1913__AT1G76300.1 1003 0.0
Ahg335306 jgi|Araly1|335306|fgenesh1_pg.C_scaffold_1001871 337 8e-92
> Ahg476783 jgi|Araly1|476783|fgenesh2_kg.2__1913__AT1G76300.1
Length=708
Score = 1003 bits (543), Expect = 0.0
Identities = 662/716 (92%), Gaps = 22/716 (3%)
Strand=Plus/Plus
Query 27 AAAAAGGAAAAGGGAAGGTTCAATTAGGGTTTAGTGAATCGACGAAGATGAGTCGGAGTT 86
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 AAAAAGGAAAAGGGAAGGTTCAATTAGGGTTTAGTGAAT---CGAAGATGAGTCGGAGTT 57
Query 87 TGGGGATTCCGGTGAAGCTTCTTCACGAATCGTCCGGTCATATCGTG-AGTGTAGAGATG 145
||||||||||||||||||||||||||||||||||||||||||| ||| | || ||||||
Sbjct 58 TGGGGATTCCGGTGAAGCTTCTTCACGAATCGTCCGGTCATATTGTGTCG-GTGGAGATG 116
Query 146 AAGAGCGGTGAGCTTTACAGAGGAAGCATGATCGAGTGTGAGGATAATTGGAACTGTCAG 205
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 AAGAGCGGTGAGCTGTACAGAGGAAGCATGATCGAGTGTGAGGATAATTGGAACTGTCAG 176
Query 206 CTCGAGAACATCACCTATACGGCCAAGGATGGTAAGGTATCACAGCTTGAGCATGTCTTC 265
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 177 CTCGAGAACATCACCTATAAGGCCAAGGATGGTAAGGTATCACAGCTTGAACATGTCTTC 236
Query 266 ATTCGAGGCAGCTTAGTCAGGTTTTTAGTCATACCAGACATGTTAAAGAATGCTCCAATG 325
||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 237 ATTCGAGGCAGTTTAGTCAGGTTTATAGTCATACCAGACATGCTAAAGAATGCTCCAATG 296
Query 326 TTCAAGGATGTTAGGGGCAAGGGAAAGAGCGCTTCACTAGGTGTAGGCAGAGGTAGAGGT 385
|||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||
Sbjct 297 TTCAAGGATGTTAGGGGCAAGGGAAAAAGCTCTTCACTAGGTGTAGGCAGAGGAAGAGGC 356
Query 386 GCTGCAATGCGAGCCAAAGGT-A-----CTGGGCGTGGAACAGGAGGAGGAAGAGGG-GC 438
||||||||||||||||||||| | |||| ||||||||||||||| | | ||| ||
Sbjct 357 GCTGCAATGCGAGCCAAAGGTCAAGGTACTGGACGTGGAACAGGAGGA--A-G-GGGAGC 412
Query 439 TGTGCCACCTGTGAGGAGATAGTTTAGTTAACCCTCGTAATGTAGCTTCGGCTCGTGAGA 498
|||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||
Sbjct 413 CGTGCCACCTGTGAGGAGATAGTTTAGTTAACCCTGGTAATGTAGCTTCGACTCTTGAGA 472
Query 499 CATTCTCTGCAGTATCCATGAGAATCCGCCATCTTCAGCTCGTCACTTATGCATTTAAGG 558
|| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 473 CAATCTCTGCAGTATCCATGAGAATCCGCCAACTTCAGCTTGTCACTTATGCATTTAAGG 532
Query 559 TACACAGCAAGTAAAATCTCTAA---GA---CATGGAGGGAAGAGAGAAAGAGGAACTAG 612
||||||| ||||||||||||||| || || |||||||||||||||||||| || ||
Sbjct 533 TACACAGTAAGTAAAATCTCTAACAAGAAGACAGGGAGGGAAGAGAGAAAGAGGGACCAG 592
Query 613 TTCTGTGTTTTGGGTTACTAAGATGTTTGAAAAATTGACATGTTTTGTTAATGTGGTCAT 672
|||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||
Sbjct 593 TTCTGTGTTTTGGGTTACTAAGATGTTTGAAACATTGACATGTTTTGTTCACGTGGTCAT 652
Query 673 TGAGAGACTTCCCACATCTTATGTATAATATAGCACGATTCAAATTTCTATAATGA 728
||||||||||||||||| ||||||| || | |||||||||||||||||||||||||
Sbjct 653 TGAGAGACTTCCCACATTTTATGTAGAACAGAGCACGATTCAAATTTCTATAATGA 708
> Ahg335306 jgi|Araly1|335306|fgenesh1_pg.C_scaffold_1001871
Length=429
Score = 337 bits (182), Expect = 8e-92
Identities = 285/333 (86%), Gaps = 13/333 (4%)
Strand=Plus/Plus
Query 74 ATGAGTCGGAGTTTGGGGATTCCGGTGAAGCTTCTTCACGAATCGTCCGGTCATATCGTG 133
||||| || |||||||| || |||||||||||||||||||| | || ||||||||||||
Sbjct 1 ATGAGCCGAAGTTTGGGAATACCGGTGAAGCTTCTTCACGAGGCTTCTGGTCATATCGTG 60
Query 134 A-GTGTAGAGATGAAGAGCGGTGAGCTTTACAGAGGAAGCATGATCGAGTGTGAGGATAA 192
| | || ||| | |||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct 61 ACG-GTGGAGCTAAAGAGCGGCGAGCTTTACAGAGGAAGTATGATTGAGTGTGAGGATAA 119
Query 193 TTGGAACTGTCAGCTCGAGAACATCACCTATACGGCCAAGGATGGTAAGGTATCACAGCT 252
|||||||||||||||||| | || || ||||| ||||||||||||||||||||||||||
Sbjct 120 CTGGAACTGTCAGCTCGAGGATATTACTTATACCGCCAAGGATGGTAAGGTATCACAGCT 179
Query 253 TGAGCATGTCTTCATTCGAGGCAGCTTAGTCAGGTTTTTAGTCATACCAGACATGT-TAA 311
||||||||| ||||||||||||||| |||||||||| | |||||||||||||| | | |
Sbjct 180 TGAGCATGTTTTCATTCGAGGCAGCAAAGTCAGGTTTATGGTCATACCAGACAT-TCTCA 238
Query 312 AGAATGCTCCAATGTTCAAG-GAT--G-T--TAGGGGCAAGGGAAAGAGCGCTTCACTAG 365
|| ||||||||||||||||| | | | | ||| ||||||||||||| | |||||||
Sbjct 239 AGCATGCTCCAATGTTCAAGCGCTTAGATGCTAGAATCAAGGGAAAGAGCTCATCACTAG 298
Query 366 GTGTAGGCAGAGGTAGAGGTGCTGCAATGCGAG 398
|||| ||||||||| ||| ||||||||||||
Sbjct 299 GTGTTGGCAGAGGTCGAG---CTGCAATGCGAG 328
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27524746074
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5