BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G76310.1
Length=1347
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909252 jgi|Araly1|909252|Al_scaffold_0002_2333 2119 0.0
Ahg907814 jgi|Araly1|907814|Al_scaffold_0002_895 686 0.0
Ahg900336 jgi|Araly1|900336|Al_scaffold_0004_986 656 0.0
Ahg906819 jgi|Araly1|906819|Al_scaffold_0003_3947 514 7e-145
Ahg915088 jgi|Araly1|915088|Al_scaffold_0009_57 398 7e-110
Ahg915085 jgi|Araly1|915085|Al_scaffold_0009_54 387 2e-106
> Ahg909252 jgi|Araly1|909252|Al_scaffold_0002_2333
Length=1299
Score = 2119 bits (1147), Expect = 0.0
Identities = 1249/1299 (96%), Gaps = 3/1299 (0%)
Strand=Plus/Plus
Query 52 ATGGGTGGATCGGATGAGAACAGACACGGAGTCATTGGACCGATGAATCGACAACAAGGG 111
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTGGATCAGATGAGAACAGACACGGAGTCATTGGACCGATGAATCGACAACAAGGG 60
Query 112 GGTTTACGTGGAGGAAAGGTAATTCCGACGAATGGACAGACAAGAAGGGCACTGAGTAAT 171
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 61 AGTTTACGTGGAGGAAAGGTAATTCCGACGAATGGACAGACAAGAAGAGCACTGGGTAAT 120
Query 172 ATAAACAAGAACATCATCGGAGCTCCGGTCTATCCTTGTGCTGT---CAAGAGACCATTC 228
||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||
Sbjct 121 ATAAACAAGAACATCATCGGAGCTCCGGTTTATCCTTGTGCTGTCAACAAAAGACCATTC 180
Query 229 ACTGAGAAAAATGGGATTTGTAACAAGAAGATTCCACCTGTTCCAGTGCATCGACCAGTT 288
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACTGAGAACAATGGGATATGTAACAAGAAGATTCCACCTGTTCCAGTGCATCGACCAGTT 240
Query 289 ACTAGGAAATTTGCTGCTCAATTAGCTGAGAACAATCTCCAAATCCACAAGGAGGAAACC 348
|||||||| ||||||| ||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 241 ACTAGGAAGTTTGCTGTTCAGTTAGCTGAGAACAATCCCCAAATCCACAAGGAGGAAACC 300
Query 349 AAGAAACCAGACTTGATTTCAAACGAAGCATTAGATAGAATCATAACAGATGTGGAAGAA 408
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGAAATCAGACTTGATTTCGAACGAAGCATTAGATAGAATCATAACAGATGTGGAAGAA 360
Query 409 GGAGACTTTAATGAACCAATGTTTGTTCAACATACTGAAGCAATGCTTGAAGAGATTGAC 468
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 361 GGAGACTTTAATGAACCAATGTTTGTTCAACACACTGAAGCCATGCTTGAAGAGATTGAC 420
Query 469 AAAATGGAAGGGATTGAAATGCAAGATTCAAATGATATTGATGCTGAAGTAGAAGAGTCT 528
|||||| |||||||||||| |||||||||||| |||||||| ||||||||||||||||
Sbjct 421 CGAATGGAGGGGATTGAAATGGAAGATTCAAATGTTATTGATGTTGAAGTAGAAGAGTCT 480
Query 529 GTGATGGATATAGACAGCTGTGACAAGAACAATCCTTTATCTGTAGTTGAATACATTAAT 588
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 481 GTTATGGATATAGACAGCTGTGACAAGAACAATCCTTTAGCTGTAGTTGAATACATCGAT 540
Query 589 GACATATATTGCTTCTACAAGAAAAATGAGTGTCGTAGCTGTGTCCCGCCTAACTACATG 648
||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct 541 GACATATATTGCTTCTACAAGAAAAATGAGTGTCGTAGCTGCGTACCGCCTAATTACATG 600
Query 649 GAGAATCAACATGACATTAACGAGAGGATGAGAGGAATCCTTTTTGATTGGTTGATTGAG 708
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 601 GAGAATCAACATGACATTAACGAGAGGATGAGAGGAATCCTTATTGATTGGTTGATTGAG 660
Query 709 GTACATTACAAGTTTGAGCTGATGGAGGAGACGCTTTACCTGACAATCAATCTCATTGAC 768
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 661 GTACATTACAAGTTTGAGCTGATGGAGGAGACGCTTTACCTGACAATCAATCTCATCGAT 720
Query 769 AGATTTCTTGCGGTTCATCAACATATCGCGAGGAAAAAGCTTCAGCTTGTGGGTGTAACA 828
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 721 AGATTTCTTGCGGTTCATCATCACATCGCGAGGAAAAAGCTTCAGCTTGTGGGTGTAACA 780
Query 829 GCTATGTTACTTGCTTGCAAATATGAAGAAGTTTCAGTTCCAGTTGTTGATGATCTAATC 888
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 781 GCTATGTTGCTTGCTTGCAAATACGAAGAAGTTTCAGTTCCAGTTGTTGATGATCTTATC 840
Query 889 CTGATCTCTGACAAGGCTTATACTAGGACAGAGATTCTTGATATGGAGAAGTTAATGGCG 948
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 841 CTGATCTCTGACAAGGCTTACACTAGGACAGAGATTCTTGATATGGAGAAGTTAATGGCG 900
Query 949 AATACCTTGCAATTCAATTTCTGTCTGCCAACTCCATATGTGTTCATGAGACGGTTTCTC 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AATACCTTGCAATTCAATTTCTGTCTGCCAACTCCATATGTGTTCATGAGACGGTTTCTC 960
Query 1009 AAAGCTGCACAATCTGACAAAAAGCTTGAGCTTTTATCATTCTTCATGATCGAGCTTTGT 1068
|||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 961 AAAGCTTCACAATCTGACAAAAAGCTTGAGCTTCTATCATTCTTCATCATCGAGCTTTGT 1020
Query 1069 TTAGTGGAGTACGAGATGCTTCAGTACACTCCTTCTCAGTTGGCTGCATCGGCGATCTAC 1128
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CTAGTGGAGTACGAGATGCTTCAGTACACTCCTTCTCAGTTGGCTGCATCGGCGATCTAC 1080
Query 1129 ACTGCTCAGAGCACACTTAAAGGATACGAGGATTGGAGCAAAACCAGTGAGTTCCACTCA 1188
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1081 ACTGCTCAGAGCACGCTTAAAGGATTCGAGGATTGGAGCAAAACCAGTGAGTTCCACTCA 1140
Query 1189 GGCTACACCGAAGAAGCGCTTCTGGAATGTTCGAGAAAGATGGTTGGTTTGCATCACAAG 1248
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GGCTACACCGAAGAAACGCTTCTGGAATGTTCGAGAAAGATGGTTGGTTTGCATCACAAG 1200
Query 1249 GCAGGGACAGGGAAGCTAACAGGTGTTCACAGGAAATACAACACATCCAAATTTGGTTAT 1308
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GCAGGGATAGGGAAGTTAACAGGTGTTCACAGGAAATACAACACATCCAAATTTGGTTAT 1260
Query 1309 GCTGCAAGAATTGAACCAGCTGGGTTTCTTCTGCTGTGA 1347
|||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GCTGCAAGAATTGAACCAGCTGGGTTTCTTCTGCTGTGA 1299
> Ahg907814 jgi|Araly1|907814|Al_scaffold_0002_895
Length=519
Score = 686 bits (371), Expect = 0.0
Identities = 464/507 (92%), Gaps = 13/507 (3%)
Strand=Plus/Plus
Query 114 TTTACGTGGAGGAAAGGTAATTCCGACGAATGGACAGACAAGAAGGGCACTGAGTAATAT 173
||||| |||||||||||||||||| |||||| ||||||||||||| ||||||||||||||
Sbjct 18 TTTACCTGGAGGAAAGGTAATTCCAACGAATAGACAGACAAGAAGAGCACTGAGTAATAT 77
Query 174 AAACAAGAACATCATCGGAGCTCCGGTCTATCCTTGTGCTGT---CAAGAGACCATTCAC 230
|||||||||||||||||||||||| || ||||||| |||||| |||||||||||||||
Sbjct 78 AAACAAGAACATCATCGGAGCTCCTGTTTATCCTTCTGCTGTCAACAAGAGACCATTCAC 137
Query 231 TGAGAAAAATGGGATTTGTAACAAGAAGATTCCACCTGTTCCAGTGCATCGACCAGTTAC 290
|| |||||||| |||||||||||||||||| | |||| ||||||| | |||||
Sbjct 138 ---CAAGAATGGGATATGTAACAAGAAGATTCCA-C---TCCATTGCATCGTCTGGTTAC 190
Query 291 TAGG-AAATTTGCTGCTCAATTAGCTGAGAACAATCTCCAAATCCACAAGGAGGAAACCA 349
|||| |||||||||||||| |||||||||||||||| |||||| ||||||||||||||||
Sbjct 191 TAGGTAAATTTGCTGCTCAGTTAGCTGAGAACAATCCCCAAATTCACAAGGAGGAAACCA 250
Query 350 AGAAACCAGACTTGATTTCAAACGAAGCATTAGATAGAATCATAACAGATGTGGAAGAAG 409
||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||
Sbjct 251 AGAAACCAGACTTGATTTCGAACGAAACATTAGATAGAATCATAATAGATGTGGAAGAAG 310
Query 410 GAGACTTTAATGAACCAATGTTTGTTCAACATACTGAAGCAATGCTTGAAGAGATTGACA 469
||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 311 GAGACTTTATTGAACCAATGTTTGTTCAACACACTGAAGCCATGCTTGAAGAGATTGACC 370
Query 470 AAATGGAAGGGATTGAAATGCAAGATTCAAATGATATTGATGCTGAAGTAGAAGAGTCTG 529
||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 371 GAATGGAAGGAATTGAAATGGAAGATTCAAATGATATTGATGTTGAAGTAGAAGAGTCTG 430
Query 530 TGATGGATATAGACAGCTGTGACAAGAACAATCCTTTA-TCTGTAGTTGAATACATTAAT 588
||||||||||||||||||||||||||||||||||| || | |||||||||||||||| ||
Sbjct 431 TGATGGATATAGACAGCTGTGACAAGAACAATCCTCTAGT-TGTAGTTGAATACATTGAT 489
Query 589 GACATATATTGCTTCTACAAGAAAAAT 615
|||||||||||||||||||||||||||
Sbjct 490 GACATATATTGCTTCTACAAGAAAAAT 516
> Ahg900336 jgi|Araly1|900336|Al_scaffold_0004_986
Length=468
Score = 656 bits (355), Expect = 0.0
Identities = 433/469 (92%), Gaps = 11/469 (2%)
Strand=Plus/Plus
Query 151 ACAAGAAGGGCACTGAGTAATATAAACAAGAACATCATCGGAGCTCCGGTCTATCCTTGT 210
|||||||| |||||||||||||||||||||||||||||||||||||| || ||||||| |
Sbjct 1 ACAAGAAGAGCACTGAGTAATATAAACAAGAACATCATCGGAGCTCCTGTTTATCCTTCT 60
Query 211 GCTGT---CAAGAGACCATTCACTGAGAAAAATGGGATTTGTAACAAGAAGATTCCACCT 267
||||| ||||||||||||||| || |||||||| |||||||||||||||||| |
Sbjct 61 GCTGTCAACAAGAGACCATTCAC---CAAGAATGGGATATGTAACAAGAAGATTCCA-C- 115
Query 268 GTTCCAGTGCATCGACCAGTTACTAGG-AAATTTGCTGCTCAATTAGCTGAGAACAATCT 326
|||| ||||||| || ||||||||| |||||||||||||| ||||||||||||||||
Sbjct 116 --TCCATTGCATCGTCCGGTTACTAGGTAAATTTGCTGCTCAGTTAGCTGAGAACAATCC 173
Query 327 CCAAATCCACAAGGAGGAAACCAAGAAACCAGACTTGATTTCAAACGAAGCATTAGATAG 386
|||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 174 CCAAATTCACAAGGAGGAAACCAAGAAACCAGACTTGATTTCGAACGAAACATTAGATAG 233
Query 387 AATCATAACAGATGTGGAAGAAGGAGACTTTAATGAACCAATGTTTGTTCAACATACTGA 446
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 234 AATCATAACAGATGTGGAAGAAGGAGACTTTAATGAACCAATGTTTGTTCAACACACTGA 293
Query 447 AGCAATGCTTGAAGAGATTGACAAAATGGAAGGGATTGAAATGCAAGATTCAAATGATAT 506
||| |||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||
Sbjct 294 AGCCATGCTTGAAGAGATTGACCGAATGGAAGGAATTGAAATGGAAGATTCAAATGATAT 353
Query 507 TGATGCTGAAGTAGAAGAGTCTGTGATGGATATAGACAGCTGTGACAAGAACAATCCTTT 566
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 354 TGATGTTGAAGTAGAAGAGTCTGTGATGGATATAGACAGCTGTGACAAGAACAATCCTCT 413
Query 567 ATCTGTAGTTGAATACATTAATGACATATATTGCTTCTACAAGAAAAAT 615
| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 414 AGCTGTAGTTGAATACATTGATGACATATATTGCTTCTACAAGAAAAAT 462
> Ahg906819 jgi|Araly1|906819|Al_scaffold_0003_3947
Length=669
Score = 514 bits (278), Expect = 7e-145
Identities = 317/336 (94%), Gaps = 2/336 (1%)
Strand=Plus/Plus
Query 281 GACCAGTT-ACTAGGAAATTTGCTGCTCAATTAGCTGAGAACAATCTCCAAATCCACAAG 339
||||| || || | ||||||||||||||| |||||||||||||||| |||||| ||||||
Sbjct 281 GACCA-TTCACCAAGAAATTTGCTGCTCAGTTAGCTGAGAACAATCCCCAAATTCACAAG 339
Query 340 GAGGAAACCAAGAAACCAGACTTGATTTCAAACGAAGCATTAGATAGAATCATAACAGAT 399
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 340 GAGGAAACCAAGAAACCAGACTTGATTTCGAACGAAACATTAGATAGAATCATAACAGAT 399
Query 400 GTGGAAGAAGGAGACTTTAATGAACCAATGTTTGTTCAACATACTGAAGCAATGCTTGAA 459
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 400 GTGGAAGAAGGAGACTTTAATGAACCAATGTTTGTTCAACACACTGAAGCCATGCTTGAA 459
Query 460 GAGATTGACAAAATGGAAGGGATTGAAATGCAAGATTCAAATGATATTGATGCTGAAGTA 519
||||||||| ||||||||| ||||||||| ||||||||||||||||||||| |||||||
Sbjct 460 GAGATTGACCGAATGGAAGGAATTGAAATGGAAGATTCAAATGATATTGATGTTGAAGTA 519
Query 520 GAAGAGTCTGTGATGGATATAGACAGCTGTGACAAGAACAATCCTTTATCTGTAGTTGAA 579
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 520 GAAGAGTCTGTGATGGATATAGACAGCTGTGACAAGAACAATCCTCTAGCTGTAGTTGAA 579
Query 580 TACATTAATGACATATATTGCTTCTACAAGAAAAAT 615
|||||| |||||||||||||||||||||||||||||
Sbjct 580 TACATTGATGACATATATTGCTTCTACAAGAAAAAT 615
Score = 154 bits (83), Expect = 2e-36
Identities = 113/127 (89%), Gaps = 3/127 (2%)
Strand=Plus/Plus
Query 114 TTTACGTGGAGGAAAGGTAATTCCGACGAATGGACAGACAAGAAGGGCACTGAGTAATAT 173
||||| |||||||||||||||||| |||||| ||||||||||||| ||||||||||||||
Sbjct 171 TTTACCTGGAGGAAAGGTAATTCCAACGAATAGACAGACAAGAAGAGCACTGAGTAATAT 230
Query 174 AAACAAGAACATCATCGGAGCTCCGGTCTATCCTTGTGCTGTCAA---GAGACCATTCAC 230
|||||||||||||| | ||||||| || ||||||| ||||||||| ||||||||||||
Sbjct 231 AAACAAGAACATCAGCAGAGCTCCTGTTTATCCTTCTGCTGTCAACAAGAGACCATTCAC 290
Query 231 TGAGAAA 237
|||||
Sbjct 291 CAAGAAA 297
> Ahg915088 jgi|Araly1|915088|Al_scaffold_0009_57
Length=348
Score = 398 bits (215), Expect = 7e-110
Identities = 241/254 (95%), Gaps = 0/254 (0%)
Strand=Plus/Plus
Query 343 GAAACCAAGAAACCAGACTTGATTTCAAACGAAGCATTAGATAGAATCATAACAGATGTG 402
|||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||
Sbjct 94 GAAACCAAGAAACCAGACTTGATTTCGAACGAAACATTAGATAGAATCAAAACAGATGTG 153
Query 403 GAAGAAGGAGACTTTAATGAACCAATGTTTGTTCAACATACTGAAGCAATGCTTGAAGAG 462
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 154 GAAGAAGGAGACTTTAATGAACCAATGTTTGTTCAACACACTGAAGCCATGCTTGAAGAG 213
Query 463 ATTGACAAAATGGAAGGGATTGAAATGCAAGATTCAAATGATATTGATGCTGAAGTAGAA 522
|||||| ||||||||| ||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 214 ATTGACCGAATGGAAGGAATTGAAATGGAAGATTCAAATGATATTGATGTTGAAGTAGAA 273
Query 523 GAGTCTGTGATGGATATAGACAGCTGTGACAAGAACAATCCTTTATCTGTAGTTGAATAC 582
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 274 GAGTCTGTGATGGATATAGACAGCTGTGACAAGAACAATCCTTTAGCTGTAGTTGAATAC 333
Query 583 ATTAATGACATATA 596
|| ||||||||||
Sbjct 334 ATCGATGACATATA 347
> Ahg915085 jgi|Araly1|915085|Al_scaffold_0009_54
Length=417
Score = 387 bits (209), Expect = 2e-106
Identities = 239/254 (94%), Gaps = 0/254 (0%)
Strand=Plus/Plus
Query 343 GAAACCAAGAAACCAGACTTGATTTCAAACGAAGCATTAGATAGAATCATAACAGATGTG 402
|||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||
Sbjct 163 GAAACCAAGAAACCAGACTTGATTTCGAACGAAACATTAGATAGAATCAAAACAGATGTG 222
Query 403 GAAGAAGGAGACTTTAATGAACCAATGTTTGTTCAACATACTGAAGCAATGCTTGAAGAG 462
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 223 GAAGAAGGAGACTTTAATGAACCAATGTTTGTTCAACACACTGAAGCCATGCTTGAAGAG 282
Query 463 ATTGACAAAATGGAAGGGATTGAAATGCAAGATTCAAATGATATTGATGCTGAAGTAGAA 522
|||||| ||||||||| ||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 283 ATTGACCGAATGGAAGGAATTGAAATGGAAGATTCAAATGATATTGATGTTGAAGTAGAA 342
Query 523 GAGTCTGTGATGGATATAGACAGCTGTGACAAGAACAATCCTTTATCTGTAGTTGAATAC 582
|||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||
Sbjct 343 GAGTCTGTGATGGATATAGACAGCTGTGACAAGAACAATCCTCTAGCTGTAGGTGAATAC 402
Query 583 ATTAATGACATATA 596
|| ||||||||||
Sbjct 403 ATCGATGACATATA 416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50398496274
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5